Wall clock time and date at job start Mon Mar 30 2020 02:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46712 * 2 1 4 4 C 1.50699 * 109.47347 * 119.99547 * 2 1 3 5 5 H 1.07999 * 120.00128 * 120.00179 * 4 2 1 6 6 C 1.37877 * 119.99744 * 300.00442 * 4 2 1 7 7 N 1.31507 * 120.00563 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99647 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47085 * 60.00274 * 8 6 4 10 10 H 1.48498 * 109.46994 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47376 * 299.99906 * 8 6 4 12 12 N 1.46897 * 109.47369 * 239.99942 * 2 1 3 13 13 C 1.47965 * 111.00070 * 59.99638 * 12 2 1 14 14 C 1.53939 * 86.17880 * 137.58385 * 13 12 2 15 15 N 1.46904 * 113.73294 * 221.81416 * 14 13 12 16 16 C 1.46896 * 110.99949 * 178.10019 * 15 14 13 17 17 C 1.46894 * 111.00053 * 302.05757 * 15 14 13 18 18 C 1.47960 * 111.00044 * 159.35628 * 12 2 1 19 19 H 1.08995 * 109.47125 * 299.99830 * 1 2 3 20 20 H 1.08999 * 109.47356 * 60.00443 * 1 2 3 21 21 H 1.09007 * 109.46712 * 179.97438 * 1 2 3 22 22 H 0.97004 * 120.00572 * 180.02562 * 7 6 4 23 23 H 1.08999 * 113.75581 * 23.26965 * 13 12 2 24 24 H 1.08997 * 113.85587 * 251.91499 * 13 12 2 25 25 H 1.09002 * 113.73278 * 90.63886 * 14 13 12 26 26 H 1.08997 * 109.47034 * 60.00283 * 16 15 14 27 27 H 1.09004 * 109.46970 * 180.02562 * 16 15 14 28 28 H 1.09004 * 109.47510 * 299.99914 * 16 15 14 29 29 H 1.09005 * 109.47714 * 59.99505 * 17 15 14 30 30 H 1.08998 * 109.47356 * 179.97438 * 17 15 14 31 31 H 1.09003 * 109.47212 * 299.99706 * 17 15 14 32 32 H 1.09001 * 113.75748 * 108.09640 * 18 12 2 33 33 H 1.09002 * 113.76361 * 336.73597 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1201 4.0080 9 1 3.8064 -1.1205 4.0082 10 1 1.8259 -0.4203 5.2204 11 1 1.8260 -2.5199 4.0079 12 7 2.0197 -0.6925 -1.1994 13 6 1.5452 -0.0216 -2.4299 14 6 2.9685 -0.2399 -2.9743 15 7 3.5050 0.9151 -3.7066 16 6 4.8788 0.6594 -4.1595 17 6 2.6362 1.2721 -4.8360 18 6 3.4152 -0.3052 -1.5026 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.7086 1.1614 3.4844 23 1 1.2861 1.0273 -2.2861 24 1 0.7788 -0.5790 -2.9683 25 1 3.0930 -1.1794 -3.5127 26 1 4.8883 -0.2080 -4.8195 27 1 5.2518 1.5305 -4.6983 28 1 5.5159 0.4662 -3.2964 29 1 1.6428 1.5243 -4.4649 30 1 3.0563 2.1302 -5.3606 31 1 2.5644 0.4269 -5.5206 32 1 4.1430 -1.0907 -1.2990 33 1 3.7030 0.6608 -1.0877 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307333497.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:28 Heat of formation + Delta-G solvation = 42.124423 kcal Electronic energy + Delta-G solvation = -13139.635024 eV Core-core repulsion = 11008.686369 eV Total energy + Delta-G solvation = -2130.948655 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.43046 -35.86345 -33.21650 -30.13680 -27.71795 -26.07184 -25.57714 -24.30630 -22.70728 -19.73329 -18.89576 -16.41447 -15.57568 -15.37180 -14.67325 -14.37646 -13.98276 -13.13390 -12.81865 -12.66558 -12.28130 -11.86942 -11.56653 -11.50459 -11.36373 -11.03946 -10.74469 -10.56462 -10.19501 -10.02889 -9.93822 -9.44644 -8.94086 -8.38586 -8.17289 -7.61050 -5.96049 -4.00333 3.35792 3.39481 3.42938 4.13953 4.45993 4.88994 5.02539 5.29596 5.35176 5.45305 5.50563 5.64981 5.72471 5.93002 5.97338 6.03538 6.24496 6.28556 6.48682 6.58494 6.73771 6.84929 7.09334 7.19148 7.35265 7.42845 7.49513 7.86802 8.10848 8.33466 8.56794 9.05354 9.64143 11.10867 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.056879 B = 0.008711 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.155178 B = 3213.672904 C = 3475.002024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.183 3.817 3 H 0.008 0.992 4 C -0.499 4.499 5 H 0.060 0.940 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.474 5.474 13 C 0.013 3.987 14 C 0.040 3.960 15 N -0.539 5.539 16 C 0.027 3.973 17 C 0.026 3.974 18 C 0.033 3.967 19 H 0.086 0.914 20 H 0.007 0.993 21 H 0.032 0.968 22 H 0.260 0.740 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.021 0.979 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.021 0.979 32 H 0.072 0.928 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 0.280 -11.298 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.076 3.924 3 H 0.026 0.974 4 C -0.537 4.537 5 H 0.078 0.922 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.198 5.198 13 C -0.116 4.116 14 C -0.068 4.068 15 N -0.263 5.263 16 C -0.122 4.122 17 C -0.122 4.122 18 C -0.096 4.096 19 H 0.105 0.895 20 H 0.026 0.974 21 H 0.051 0.949 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.091 0.909 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.554 0.113 -10.675 11.252 hybrid contribution 0.408 -0.228 0.265 0.537 sum 3.962 -0.115 -10.411 11.140 Atomic orbital electron populations 1.21809 0.97817 0.99564 1.00023 1.19744 0.92618 0.92541 0.87488 0.97426 1.21020 1.30811 1.12207 0.89686 0.92194 1.24936 0.95278 0.95106 0.99003 1.69877 1.37047 1.23108 1.23455 0.86574 0.79083 0.79738 0.82073 1.20354 1.21370 1.20273 1.68581 1.02564 1.46660 1.02017 1.23809 0.94654 0.98789 0.94388 1.23837 0.96950 0.91212 0.94846 1.62266 1.02285 1.37263 1.24498 1.22325 0.90443 0.99508 0.99891 1.22316 0.98171 0.99451 0.92304 1.23691 0.94205 1.00241 0.91494 0.89547 0.97435 0.94855 0.92972 0.91382 0.91057 0.91659 0.96060 0.91861 0.91253 0.91205 0.91877 0.96052 0.90939 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.87 37.16 0.33 -3.06 16 2 C 0.18 4.80 1.71 -68.87 -0.12 4.68 16 3 H 0.01 0.23 7.62 -51.93 -0.40 -0.16 16 4 C -0.50 -14.19 8.61 -34.44 -0.30 -14.49 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -26.11 11.32 55.43 0.63 -25.48 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 N -0.47 -10.71 5.97 -231.82 -1.38 -12.10 16 13 C 0.01 0.25 5.32 -2.76 -0.01 0.23 16 14 C 0.04 0.67 3.37 -69.40 -0.23 0.44 16 15 N -0.54 -8.08 4.98 -244.59 -1.22 -9.30 16 16 C 0.03 0.33 9.55 60.06 0.57 0.91 16 17 C 0.03 0.33 9.35 60.06 0.56 0.89 16 18 C 0.03 0.67 7.42 -2.77 -0.02 0.64 16 19 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 20 H 0.01 0.15 7.02 -51.93 -0.36 -0.21 16 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.07 1.34 7.45 -51.93 -0.39 0.96 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 29 H 0.07 0.90 7.13 -51.93 -0.37 0.53 16 30 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16 31 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.07 1.55 7.62 -51.93 -0.40 1.16 16 LS Contribution 264.82 15.07 3.99 3.99 Total: -1.00 -29.48 264.82 -7.89 -37.37 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -5.57 Total: -3.09 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 0.69 Total: -8.22 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -1.98 Total: -46.88 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.48 -7.89 -37.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307333497.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.496 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds