Wall clock time and date at job start Mon Mar 30 2020 02:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46712 * 2 1 4 4 C 1.50699 * 109.47347 * 119.99547 * 2 1 3 5 5 H 1.07999 * 120.00128 * 120.00179 * 4 2 1 6 6 C 1.37877 * 119.99744 * 300.00442 * 4 2 1 7 7 N 1.31507 * 120.00563 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99647 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47085 * 60.00274 * 8 6 4 10 10 H 1.48498 * 109.46994 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47376 * 299.99906 * 8 6 4 12 12 N 1.46897 * 109.47369 * 239.99942 * 2 1 3 13 13 C 1.47965 * 111.00070 * 59.99638 * 12 2 1 14 14 C 1.53939 * 86.17880 * 137.58385 * 13 12 2 15 15 N 1.46904 * 113.73294 * 221.81416 * 14 13 12 16 16 C 1.46896 * 110.99949 * 178.10019 * 15 14 13 17 17 C 1.46894 * 111.00053 * 302.05757 * 15 14 13 18 18 C 1.47960 * 111.00044 * 159.35628 * 12 2 1 19 19 H 1.08995 * 109.47125 * 299.99830 * 1 2 3 20 20 H 1.08999 * 109.47356 * 60.00443 * 1 2 3 21 21 H 1.09007 * 109.46712 * 179.97438 * 1 2 3 22 22 H 0.97004 * 120.00572 * 180.02562 * 7 6 4 23 23 H 1.08999 * 113.75581 * 23.26965 * 13 12 2 24 24 H 1.08997 * 113.85587 * 251.91499 * 13 12 2 25 25 H 1.09002 * 113.73278 * 90.63886 * 14 13 12 26 26 H 1.08997 * 109.47034 * 60.00283 * 16 15 14 27 27 H 1.09004 * 109.46970 * 180.02562 * 16 15 14 28 28 H 1.09004 * 109.47510 * 299.99914 * 16 15 14 29 29 H 1.09005 * 109.47714 * 59.99505 * 17 15 14 30 30 H 1.08998 * 109.47356 * 179.97438 * 17 15 14 31 31 H 1.09003 * 109.47212 * 299.99706 * 17 15 14 32 32 H 1.09001 * 113.75748 * 108.09640 * 18 12 2 33 33 H 1.09002 * 113.76361 * 336.73597 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1201 4.0080 9 1 3.8064 -1.1205 4.0082 10 1 1.8259 -0.4203 5.2204 11 1 1.8260 -2.5199 4.0079 12 7 2.0197 -0.6925 -1.1994 13 6 1.5452 -0.0216 -2.4299 14 6 2.9685 -0.2399 -2.9743 15 7 3.5050 0.9151 -3.7066 16 6 4.8788 0.6594 -4.1595 17 6 2.6362 1.2721 -4.8360 18 6 3.4152 -0.3052 -1.5026 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.7086 1.1614 3.4844 23 1 1.2861 1.0273 -2.2861 24 1 0.7788 -0.5790 -2.9683 25 1 3.0930 -1.1794 -3.5127 26 1 4.8883 -0.2080 -4.8195 27 1 5.2518 1.5305 -4.6983 28 1 5.5159 0.4662 -3.2964 29 1 1.6428 1.5243 -4.4649 30 1 3.0563 2.1302 -5.3606 31 1 2.5644 0.4269 -5.5206 32 1 4.1430 -1.0907 -1.2990 33 1 3.7030 0.6608 -1.0877 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307333497.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:28 Heat of formation + Delta-G solvation = 20.040361 kcal Electronic energy + Delta-G solvation = -13140.592661 eV Core-core repulsion = 11008.686369 eV Total energy + Delta-G solvation = -2131.906291 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.98688 -37.23564 -35.20138 -32.11928 -28.82780 -27.73962 -27.33124 -26.07328 -24.07782 -21.55881 -20.40866 -18.43821 -17.28689 -16.83148 -16.23312 -15.88612 -15.32839 -14.79787 -14.44230 -14.36138 -13.54322 -13.48290 -13.10515 -12.98375 -12.72382 -12.63789 -12.51404 -12.43678 -12.21013 -11.94914 -11.51765 -11.19457 -10.97997 -10.53119 -9.46695 -9.27576 -8.12226 -6.24902 1.41159 1.43505 1.51316 2.41713 2.95781 3.15528 3.42806 3.49889 4.12809 4.27541 4.46999 4.51046 4.62781 4.69473 4.73712 4.76535 4.79214 4.80356 4.94667 4.99125 5.03396 5.04890 5.19335 5.40929 5.48440 5.69115 6.08044 6.13309 6.16342 6.26882 6.56375 6.86757 7.43984 8.93585 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.056879 B = 0.008711 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.155178 B = 3213.672904 C = 3475.002024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.190 3.810 3 H -0.028 1.028 4 C -0.521 4.521 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.962 3.038 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.272 1.272 12 N -0.491 5.491 13 C 0.015 3.985 14 C 0.067 3.933 15 N -0.559 5.559 16 C 0.027 3.973 17 C 0.026 3.974 18 C 0.029 3.971 19 H 0.061 0.939 20 H 0.029 0.971 21 H 0.029 0.971 22 H 0.263 0.737 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.034 0.966 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.369 -0.311 -12.379 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.082 3.918 3 H -0.010 1.010 4 C -0.559 4.559 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.197 1.197 12 N -0.215 5.215 13 C -0.114 4.114 14 C -0.041 4.041 15 N -0.284 5.284 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.101 4.101 19 H 0.080 0.920 20 H 0.048 0.952 21 H 0.049 0.951 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.121 -0.478 -11.781 12.490 hybrid contribution 0.251 -0.004 0.537 0.593 sum 4.372 -0.482 -11.244 12.073 Atomic orbital electron populations 1.21631 0.97370 0.99180 0.99903 1.19512 0.92914 0.90640 0.88750 1.01026 1.21295 1.31205 1.12275 0.91145 0.93007 1.25744 0.95333 0.95780 1.01971 1.70003 1.37689 1.24167 1.24201 0.85554 0.78713 0.78681 0.78344 1.19696 1.20639 1.19675 1.68493 1.04264 1.46774 1.01922 1.23826 0.96638 0.98061 0.92894 1.23482 0.94657 0.92663 0.93334 1.62189 1.03828 1.36302 1.26098 1.22377 0.88757 1.00982 0.99992 1.22364 0.97481 1.00664 0.91647 1.23665 0.93063 0.99176 0.94172 0.92006 0.95164 0.95142 0.92828 0.92475 0.89303 0.90211 0.94764 0.89987 0.91998 0.91917 0.90018 0.94752 0.90475 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.27 8.87 71.98 0.64 -5.63 16 2 C 0.19 10.14 1.71 44.17 0.08 10.21 16 3 H -0.03 -1.65 7.62 -2.38 -0.02 -1.67 16 4 C -0.52 -30.11 8.61 25.60 0.22 -29.89 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.59 5.30 84.66 0.45 1.03 16 7 N -0.92 -54.49 11.32 21.45 0.24 -54.25 16 8 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 N -0.49 -22.15 5.97 -887.33 -5.30 -27.45 16 13 C 0.02 0.55 5.32 86.41 0.46 1.01 16 14 C 0.07 2.16 3.37 46.48 0.16 2.32 16 15 N -0.56 -15.61 4.98 -927.76 -4.62 -20.24 16 16 C 0.03 0.60 9.55 127.69 1.22 1.82 16 17 C 0.03 0.58 9.35 127.69 1.19 1.78 16 18 C 0.03 1.15 7.42 86.41 0.64 1.79 16 19 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 20 H 0.03 1.35 7.02 -2.39 -0.02 1.33 16 21 H 0.03 1.51 8.14 -2.38 -0.02 1.50 16 22 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 23 H 0.06 2.23 7.45 -2.39 -0.02 2.21 16 24 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 28 H 0.06 1.46 8.06 -2.39 -0.02 1.44 16 29 H 0.06 1.48 7.13 -2.38 -0.02 1.46 16 30 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 31 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.05 2.22 7.62 -2.39 -0.02 2.21 16 Total: -1.00 -62.95 264.82 -1.55 -64.50 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 1.05 Total: 6.08 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 5.05 Total: -15.55 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -9.68 Total: -101.93 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -62.95 -1.55 -64.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307333497.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.536 kcal (2) G-P(sol) polarization free energy of solvation -62.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds