Wall clock time and date at job start Mon Mar 30 2020 02:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08995 * 110.45542 * 2 1 4 4 C 1.54377 * 110.40865 * 237.58894 * 2 1 3 5 5 H 1.09002 * 110.32581 * 336.36591 * 4 2 1 6 6 N 1.46902 * 110.32434 * 98.47397 * 4 2 1 7 7 C 1.54571 * 105.08835 * 217.38053 * 4 2 1 8 8 C 1.54378 * 104.91190 * 359.97438 * 7 4 2 9 9 N 1.48555 * 110.40924 * 122.41833 * 2 1 3 10 10 C 1.46905 * 110.99889 * 277.81544 * 9 2 1 11 11 C 1.52995 * 109.47308 * 174.71166 * 10 9 2 12 12 C 1.50702 * 109.47487 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99683 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00106 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00132 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99815 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46917 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46857 * 119.99778 * 16 14 12 19 19 H 1.48497 * 109.47154 * 240.00030 * 16 14 12 20 20 H 1.08999 * 109.46773 * 299.03837 * 1 2 3 21 21 H 1.08998 * 109.47014 * 59.03628 * 1 2 3 22 22 H 1.08995 * 109.46684 * 179.04125 * 1 2 3 23 23 H 1.00896 * 111.00176 * 179.97438 * 6 4 2 24 24 H 1.00898 * 110.99849 * 303.94908 * 6 4 2 25 25 H 1.09006 * 110.41832 * 241.12056 * 7 4 2 26 26 H 1.08996 * 110.36690 * 118.82029 * 7 4 2 27 27 H 1.09002 * 110.41432 * 265.04462 * 8 7 4 28 28 H 1.09002 * 110.41130 * 142.72247 * 8 7 4 29 29 H 1.08998 * 109.47363 * 294.71227 * 10 9 2 30 30 H 1.09002 * 109.47022 * 54.71255 * 10 9 2 31 31 H 1.09010 * 109.47008 * 299.99876 * 11 10 9 32 32 H 1.08992 * 109.47457 * 59.99775 * 11 10 9 33 33 H 0.97001 * 119.99496 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0685 -0.7755 -1.2215 5 1 1.3229 -1.4867 -1.5771 6 7 2.4366 0.1564 -2.2957 7 6 3.3202 -1.5209 -0.7051 8 6 3.4293 -1.1297 0.7843 9 7 2.0482 -0.7464 1.1753 10 6 2.0570 0.1012 2.3751 11 6 2.4698 -0.7355 3.5877 12 6 2.4782 0.1339 4.8186 13 1 2.2150 1.1786 4.7436 14 6 2.8209 -0.4047 6.0407 15 7 3.1400 -1.6773 6.1323 16 14 2.8320 0.6731 7.5664 17 1 2.4373 2.0565 7.1980 18 1 1.8707 0.1329 8.5610 19 1 4.1961 0.6866 8.1530 20 1 -0.3633 0.4988 0.8985 21 1 -0.3633 0.5287 -0.8812 22 1 -0.3632 -1.0275 -0.0172 23 1 2.7905 -0.3401 -3.0996 24 1 1.6561 0.7439 -2.5480 25 1 4.2077 -1.1952 -1.2479 26 1 3.1884 -2.5982 -0.8051 27 1 4.1076 -0.2853 0.9070 28 1 3.7700 -1.9791 1.3765 29 1 2.7664 0.9173 2.2383 30 1 1.0598 0.5102 2.5384 31 1 1.7602 -1.5516 3.7246 32 1 3.4668 -1.1445 3.4245 33 1 3.3814 -2.0561 6.9920 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307463796.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:22 Heat of formation + Delta-G solvation = -9.457950 kcal Electronic energy + Delta-G solvation = -12912.498501 eV Core-core repulsion = 10779.313067 eV Total energy + Delta-G solvation = -2133.185434 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.96487 -34.47265 -32.78735 -31.12226 -30.42092 -27.62080 -24.46732 -24.09509 -21.48678 -19.75251 -19.51170 -16.35287 -15.91905 -15.28995 -14.82928 -14.45754 -14.19385 -13.62897 -13.14462 -12.78647 -12.30004 -11.82803 -11.62749 -11.46227 -10.99962 -10.92670 -10.81762 -10.73720 -10.49159 -10.35024 -9.75832 -9.32073 -9.07716 -8.72419 -8.30784 -7.82827 -5.96389 -3.98607 3.33318 3.40466 3.44777 4.30239 4.50125 4.75094 4.88556 4.98645 5.31945 5.39583 5.54556 5.68151 5.76358 5.82981 5.99807 6.14248 6.20072 6.22920 6.35581 6.41872 6.51656 6.56421 7.00085 7.13959 7.35336 7.48969 7.56799 7.80912 7.93581 8.12193 8.47559 9.09020 9.64928 11.15119 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.064472 B = 0.007325 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.195894 B = 3821.411686 C = 4019.347756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.059 3.941 3 H 0.056 0.944 4 C 0.088 3.912 5 H 0.044 0.956 6 N -0.844 5.844 7 C -0.119 4.119 8 C 0.040 3.960 9 N -0.505 5.505 10 C 0.053 3.947 11 C 0.030 3.970 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.059 0.941 21 H 0.048 0.952 22 H 0.060 0.940 23 H 0.338 0.662 24 H 0.338 0.662 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.082 0.918 29 H 0.021 0.979 30 H 0.060 0.940 31 H 0.024 0.976 32 H 0.016 0.984 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 1.758 -14.377 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.050 4.050 3 H 0.074 0.926 4 C -0.024 4.024 5 H 0.062 0.938 6 N -0.375 5.375 7 C -0.157 4.157 8 C -0.088 4.088 9 N -0.230 5.230 10 C -0.074 4.074 11 C -0.008 4.008 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 H 0.078 0.922 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.151 0.849 24 H 0.151 0.849 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.034 0.966 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.067 1.452 -13.580 13.813 hybrid contribution -0.184 0.784 0.244 0.842 sum -2.252 2.236 -13.335 13.708 Atomic orbital electron populations 1.21722 0.94479 1.02093 1.01080 1.22636 0.95370 0.96492 0.90537 0.92614 1.22200 0.96023 0.92706 0.91439 0.93833 1.58821 1.39791 1.25994 1.12868 1.22438 0.97382 0.99503 0.96388 1.22982 0.90880 1.00688 0.94235 1.65458 1.17484 1.37623 1.02427 1.22492 0.99777 0.94630 0.90483 1.19044 0.96814 0.95183 0.89744 1.21249 1.45878 0.96046 0.92772 0.92781 1.24996 0.95404 0.94964 0.98986 1.69988 1.46569 1.11936 1.24807 0.86546 0.77593 0.80726 0.83190 1.19786 1.20993 1.21031 0.92206 0.93282 0.92088 0.84925 0.84916 0.90964 0.91474 0.93998 0.89936 0.96027 0.92126 0.95783 0.96593 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.34 37.16 0.35 -1.55 16 2 C 0.06 0.93 2.55 -66.07 -0.17 0.76 16 3 H 0.06 0.94 7.91 -51.93 -0.41 0.53 16 4 C 0.09 1.17 3.75 -66.16 -0.25 0.92 16 5 H 0.04 0.56 7.84 -51.93 -0.41 0.15 16 6 N -0.84 -9.31 9.15 -3.35 -0.03 -9.34 16 7 C -0.12 -1.68 6.81 -25.18 -0.17 -1.85 16 8 C 0.04 0.72 5.73 -2.18 -0.01 0.71 16 9 N -0.51 -9.69 5.05 -222.13 -1.12 -10.81 16 10 C 0.05 1.19 4.69 -3.82 -0.02 1.17 16 11 C 0.03 0.80 5.03 -27.88 -0.14 0.66 16 12 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 16 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H 0.06 0.89 7.36 -51.93 -0.38 0.51 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 23 H 0.34 3.03 9.08 -39.29 -0.36 2.68 16 24 H 0.34 3.24 9.02 -39.29 -0.35 2.88 16 25 H 0.07 0.95 7.96 -51.93 -0.41 0.54 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.77 7.82 -51.93 -0.41 0.37 16 28 H 0.08 1.56 7.76 -51.93 -0.40 1.15 16 29 H 0.02 0.48 7.88 -51.93 -0.41 0.07 16 30 H 0.06 1.33 7.28 -51.93 -0.38 0.95 16 31 H 0.02 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.02 0.45 7.25 -51.93 -0.38 0.07 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 266.56 15.07 4.02 4.02 Total: -1.00 -30.86 266.56 -7.77 -38.63 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.53 Total: 0.21 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -0.82 Total: -13.03 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.42 Total: -46.80 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.86 -7.77 -38.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307463796.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.171 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds