Wall clock time and date at job start Mon Mar 30 2020 02:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08995 * 110.45542 * 2 1 4 4 C 1.54377 * 110.40865 * 237.58894 * 2 1 3 5 5 H 1.09002 * 110.32581 * 336.36591 * 4 2 1 6 6 N 1.46902 * 110.32434 * 98.47397 * 4 2 1 7 7 C 1.54571 * 105.08835 * 217.38053 * 4 2 1 8 8 C 1.54378 * 104.91190 * 359.97438 * 7 4 2 9 9 N 1.48555 * 110.40924 * 122.41833 * 2 1 3 10 10 C 1.46905 * 110.99889 * 277.81544 * 9 2 1 11 11 C 1.52995 * 109.47308 * 174.71166 * 10 9 2 12 12 C 1.50702 * 109.47487 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99683 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00106 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00132 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99815 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46917 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46857 * 119.99778 * 16 14 12 19 19 H 1.48497 * 109.47154 * 240.00030 * 16 14 12 20 20 H 1.08999 * 109.46773 * 299.03837 * 1 2 3 21 21 H 1.08998 * 109.47014 * 59.03628 * 1 2 3 22 22 H 1.08995 * 109.46684 * 179.04125 * 1 2 3 23 23 H 1.00896 * 111.00176 * 179.97438 * 6 4 2 24 24 H 1.00898 * 110.99849 * 303.94908 * 6 4 2 25 25 H 1.09006 * 110.41832 * 241.12056 * 7 4 2 26 26 H 1.08996 * 110.36690 * 118.82029 * 7 4 2 27 27 H 1.09002 * 110.41432 * 265.04462 * 8 7 4 28 28 H 1.09002 * 110.41130 * 142.72247 * 8 7 4 29 29 H 1.08998 * 109.47363 * 294.71227 * 10 9 2 30 30 H 1.09002 * 109.47022 * 54.71255 * 10 9 2 31 31 H 1.09010 * 109.47008 * 299.99876 * 11 10 9 32 32 H 1.08992 * 109.47457 * 59.99775 * 11 10 9 33 33 H 0.97001 * 119.99496 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0685 -0.7755 -1.2215 5 1 1.3229 -1.4867 -1.5771 6 7 2.4366 0.1564 -2.2957 7 6 3.3202 -1.5209 -0.7051 8 6 3.4293 -1.1297 0.7843 9 7 2.0482 -0.7464 1.1753 10 6 2.0570 0.1012 2.3751 11 6 2.4698 -0.7355 3.5877 12 6 2.4782 0.1339 4.8186 13 1 2.2150 1.1786 4.7436 14 6 2.8209 -0.4047 6.0407 15 7 3.1400 -1.6773 6.1323 16 14 2.8320 0.6731 7.5664 17 1 2.4373 2.0565 7.1980 18 1 1.8707 0.1329 8.5610 19 1 4.1961 0.6866 8.1530 20 1 -0.3633 0.4988 0.8985 21 1 -0.3633 0.5287 -0.8812 22 1 -0.3632 -1.0275 -0.0172 23 1 2.7905 -0.3401 -3.0996 24 1 1.6561 0.7439 -2.5480 25 1 4.2077 -1.1952 -1.2479 26 1 3.1884 -2.5982 -0.8051 27 1 4.1076 -0.2853 0.9070 28 1 3.7700 -1.9791 1.3765 29 1 2.7664 0.9173 2.2383 30 1 1.0598 0.5102 2.5384 31 1 1.7602 -1.5516 3.7246 32 1 3.4668 -1.1445 3.4245 33 1 3.3814 -2.0561 6.9920 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307463796.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:22 Heat of formation + Delta-G solvation = -32.813344 kcal Electronic energy + Delta-G solvation = -12913.511267 eV Core-core repulsion = 10779.313067 eV Total energy + Delta-G solvation = -2134.198200 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.30548 -36.09803 -34.64955 -32.35741 -32.08244 -29.26976 -26.09631 -25.62599 -23.20309 -21.30413 -20.81434 -18.54667 -17.08090 -16.53544 -16.41870 -16.18050 -15.67307 -15.07661 -14.55210 -14.27618 -14.09825 -13.49572 -13.11893 -12.94578 -12.73014 -12.61326 -12.36224 -12.18908 -12.00899 -11.69231 -11.57570 -11.33076 -11.19991 -10.57182 -9.61796 -9.38588 -8.21644 -6.33598 1.39118 1.39929 1.53398 2.39297 3.05568 3.11519 3.58983 3.73783 3.79029 4.16182 4.28406 4.41797 4.47267 4.54683 4.57922 4.79861 4.87522 4.89017 5.01807 5.06801 5.13424 5.16687 5.35064 5.43817 5.60046 5.77271 5.97697 6.13075 6.28894 6.31894 6.65903 6.83326 7.35729 8.90924 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.064472 B = 0.007325 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.195894 B = 3821.411686 C = 4019.347756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 H 0.047 0.953 4 C 0.098 3.902 5 H 0.057 0.943 6 N -0.846 5.846 7 C -0.110 4.110 8 C 0.035 3.965 9 N -0.519 5.519 10 C 0.072 3.928 11 C 0.040 3.960 12 C -0.546 4.546 13 H 0.059 0.941 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.969 3.031 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.277 1.277 20 H 0.044 0.956 21 H 0.081 0.919 22 H 0.059 0.941 23 H 0.354 0.646 24 H 0.350 0.650 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.017 0.983 30 H 0.062 0.938 31 H -0.008 1.008 32 H -0.010 1.010 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 2.766 -15.425 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.053 4.053 3 H 0.065 0.935 4 C -0.014 4.014 5 H 0.075 0.925 6 N -0.380 5.380 7 C -0.149 4.149 8 C -0.093 4.093 9 N -0.244 5.244 10 C -0.056 4.056 11 C 0.002 3.998 12 C -0.584 4.584 13 H 0.077 0.923 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.793 3.207 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.202 1.202 20 H 0.063 0.937 21 H 0.100 0.900 22 H 0.078 0.922 23 H 0.168 0.832 24 H 0.164 0.836 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.011 0.989 32 H 0.009 0.991 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.563 2.465 -14.663 15.088 hybrid contribution -0.018 0.439 0.532 0.690 sum -2.581 2.905 -14.132 14.656 Atomic orbital electron populations 1.21713 0.92983 1.02320 1.01944 1.22762 0.96550 0.95908 0.90044 0.93525 1.22025 0.95521 0.92746 0.91076 0.92505 1.58714 1.40401 1.25773 1.13071 1.22406 0.98650 1.00427 0.93375 1.22994 0.90007 0.99428 0.96855 1.65383 1.18431 1.37662 1.02885 1.22100 0.99378 0.93814 0.90335 1.18853 0.94510 0.94644 0.91790 1.21652 1.46299 0.96550 0.93939 0.92300 1.25991 0.94572 0.96434 1.02701 1.70123 1.47128 1.13931 1.26020 0.85348 0.77960 0.78974 0.78440 1.18609 1.20134 1.20209 0.93678 0.90014 0.92235 0.83218 0.83647 0.89592 0.90338 0.95208 0.92087 0.96512 0.91910 0.98937 0.99118 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.34 71.99 0.67 -2.75 16 2 C 0.06 1.69 2.55 45.07 0.12 1.80 16 3 H 0.05 1.51 7.91 -2.39 -0.02 1.49 16 4 C 0.10 2.36 3.75 45.92 0.17 2.53 16 5 H 0.06 1.26 7.84 -2.39 -0.02 1.24 16 6 N -0.85 -15.98 9.15 -164.52 -1.51 -17.49 16 7 C -0.11 -2.93 6.81 31.60 0.22 -2.72 16 8 C 0.04 1.29 5.73 86.45 0.50 1.78 16 9 N -0.52 -20.09 5.05 -856.69 -4.33 -24.42 16 10 C 0.07 3.27 4.69 86.30 0.40 3.67 16 11 C 0.04 2.22 5.03 29.85 0.15 2.37 16 12 C -0.55 -32.36 9.11 25.60 0.23 -32.13 16 13 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 14 C 0.00 0.05 5.46 84.65 0.46 0.52 16 15 N -0.93 -58.29 13.29 21.45 0.28 -58.01 16 16 Si 0.97 45.25 29.54 68.60 2.03 47.27 16 17 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H 0.04 1.29 7.36 -2.39 -0.02 1.27 16 21 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 23 H 0.35 5.08 9.08 -89.70 -0.81 4.27 16 24 H 0.35 5.47 9.02 -89.70 -0.81 4.66 16 25 H 0.09 2.06 7.96 -2.38 -0.02 2.04 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.03 1.13 7.82 -2.39 -0.02 1.11 16 28 H 0.06 2.42 7.76 -2.39 -0.02 2.40 16 29 H 0.02 0.77 7.88 -2.39 -0.02 0.75 16 30 H 0.06 2.79 7.28 -2.39 -0.02 2.77 16 31 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 32 H -0.01 -0.58 7.25 -2.39 -0.02 -0.59 16 33 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -67.11 266.56 -1.14 -68.25 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -0.54 Total: 9.32 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 2.92 Total: -24.93 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -5.55 Total: -99.92 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.11 -1.14 -68.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307463796.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.441 kcal (2) G-P(sol) polarization free energy of solvation -67.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds