Wall clock time and date at job start Mon Mar 30 2020 02:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.06301 * 2 1 4 4 C 1.53997 * 109.92076 * 238.79845 * 2 1 3 5 5 H 1.08998 * 110.39190 * 120.46284 * 4 2 1 6 6 N 1.46904 * 110.30678 * 358.33408 * 4 2 1 7 7 C 1.54590 * 105.13804 * 239.41925 * 4 2 1 8 8 C 1.54940 * 102.92484 * 338.04133 * 7 4 2 9 9 N 1.47899 * 109.91654 * 121.20368 * 2 1 3 10 10 C 1.46901 * 110.99762 * 265.19711 * 9 2 1 11 11 C 1.52998 * 109.47057 * 58.34140 * 10 9 2 12 12 C 1.50697 * 109.47350 * 174.42870 * 11 10 9 13 13 H 1.08005 * 119.99821 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00326 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99984 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00294 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46644 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47054 * 119.99504 * 16 14 12 19 19 H 1.48494 * 109.46901 * 240.00174 * 16 14 12 20 20 H 1.08992 * 109.47371 * 300.24950 * 1 2 3 21 21 H 1.09004 * 109.46863 * 60.25153 * 1 2 3 22 22 H 1.09006 * 109.46716 * 180.24281 * 1 2 3 23 23 H 1.00899 * 110.99617 * 182.82906 * 6 4 2 24 24 H 1.00897 * 110.99875 * 306.78761 * 6 4 2 25 25 H 1.09001 * 110.72688 * 219.68120 * 7 4 2 26 26 H 1.09004 * 110.87924 * 96.46594 * 7 4 2 27 27 H 1.08998 * 110.66807 * 278.98485 * 8 7 4 28 28 H 1.09000 * 110.81388 * 155.91265 * 8 7 4 29 29 H 1.08992 * 109.47651 * 298.33396 * 10 9 2 30 30 H 1.09004 * 109.46710 * 178.33555 * 10 9 2 31 31 H 1.09002 * 109.47460 * 54.42502 * 11 10 9 32 32 H 1.09004 * 109.47187 * 294.42932 * 11 10 9 33 33 H 0.96997 * 120.00260 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0547 -0.7500 -1.2384 5 1 2.6711 -0.0903 -1.8491 6 7 0.9336 -1.2757 -2.0290 7 6 2.9060 -1.9115 -0.6763 8 6 3.2682 -1.4184 0.7472 9 7 2.0338 -0.7204 1.1894 10 6 2.3211 0.2124 2.2872 11 6 1.0510 0.9877 2.6432 12 6 1.3085 1.8439 3.8563 13 1 2.2807 1.8356 4.3267 14 6 0.3030 2.6380 4.3657 15 7 -0.8806 2.6486 3.7927 16 14 0.6224 3.6999 5.8690 17 1 2.0241 3.5091 6.3209 18 1 0.4034 5.1271 5.5225 19 1 -0.3064 3.3068 6.9590 20 1 -0.3634 0.5177 0.8877 21 1 -0.3633 0.5099 -0.8923 22 1 -0.3633 -1.0277 0.0044 23 1 1.2665 -1.8086 -2.8185 24 1 0.3141 -1.8279 -1.4552 25 1 3.8054 -2.0556 -1.2750 26 1 2.3242 -2.8321 -0.6290 27 1 4.1097 -0.7265 0.7121 28 1 3.4905 -2.2596 1.4037 29 1 3.0982 0.9107 1.9768 30 1 2.6619 -0.3464 3.1589 31 1 0.2451 0.2860 2.8581 32 1 0.7658 1.6226 1.8043 33 1 -1.5879 3.2075 4.1508 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307463805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:29 Heat of formation + Delta-G solvation = -0.237039 kcal Electronic energy + Delta-G solvation = -13144.062385 eV Core-core repulsion = 11011.276799 eV Total energy + Delta-G solvation = -2132.785585 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.17272 -34.48799 -32.84112 -31.25450 -29.61133 -27.58900 -24.77158 -24.06498 -20.95380 -20.66270 -18.76318 -16.95935 -16.04134 -15.15285 -14.54949 -14.35346 -13.95177 -13.71642 -12.71666 -12.60024 -12.23944 -11.68035 -11.64069 -11.51634 -11.35879 -10.92900 -10.60868 -10.49567 -10.44823 -10.20605 -9.85368 -9.29131 -8.94314 -8.53314 -8.32882 -7.79523 -5.97442 -3.99569 3.32569 3.39917 3.43889 4.42123 4.54424 4.68744 4.92741 5.01177 5.30465 5.38583 5.56761 5.64594 5.85831 5.96549 6.09221 6.10687 6.19936 6.37358 6.39725 6.58913 6.71116 6.96800 7.12487 7.27757 7.50121 7.56098 7.62589 7.77513 7.91782 8.09755 8.46585 9.07418 9.63949 11.13799 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062747 B = 0.008231 C = 0.007486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.126165 B = 3400.751100 C = 3739.562898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.072 3.928 3 H 0.054 0.946 4 C 0.083 3.917 5 H 0.079 0.921 6 N -0.837 5.837 7 C -0.157 4.157 8 C 0.034 3.966 9 N -0.515 5.515 10 C 0.054 3.946 11 C 0.025 3.975 12 C -0.522 4.522 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.078 0.922 21 H 0.056 0.944 22 H 0.047 0.953 23 H 0.331 0.669 24 H 0.347 0.653 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.019 0.981 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.022 0.978 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.649 -7.559 -8.965 13.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.037 4.037 3 H 0.072 0.928 4 C -0.029 4.029 5 H 0.098 0.902 6 N -0.367 5.367 7 C -0.197 4.197 8 C -0.095 4.095 9 N -0.240 5.240 10 C -0.074 4.074 11 C -0.012 4.012 12 C -0.561 4.561 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 H 0.096 0.904 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.143 0.857 24 H 0.162 0.838 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.883 -7.069 -8.868 12.347 hybrid contribution 1.236 0.265 0.878 1.539 sum 6.119 -6.804 -7.990 12.148 Atomic orbital electron populations 1.21765 0.93187 1.01308 1.02618 1.22314 0.97543 0.95806 0.88018 0.92828 1.22354 0.90961 0.95266 0.94350 0.90238 1.59027 1.19235 1.45621 1.12826 1.23329 1.00257 0.99260 0.96872 1.23116 0.92746 0.98461 0.95153 1.64883 1.24780 1.27836 1.06518 1.22486 1.00094 0.92821 0.91967 1.19239 0.91548 0.94213 0.96195 1.21258 0.97599 1.24669 1.12608 0.92835 1.24984 0.95142 0.97002 0.97156 1.69972 1.02628 1.39957 1.40551 0.86556 0.78246 0.80263 0.83050 1.19830 1.21045 1.20997 0.90355 0.92512 0.93409 0.85663 0.83808 0.91776 0.91219 0.94296 0.90721 0.96290 0.91964 0.95530 0.96001 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.07 37.16 0.30 -2.11 16 2 C 0.07 1.28 2.49 -66.64 -0.17 1.11 16 3 H 0.05 1.05 7.44 -51.93 -0.39 0.66 16 4 C 0.08 1.16 4.12 -66.35 -0.27 0.89 16 5 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 6 N -0.84 -10.36 8.18 -3.52 -0.03 -10.39 16 7 C -0.16 -1.98 6.76 -24.87 -0.17 -2.15 16 8 C 0.03 0.51 6.56 -1.89 -0.01 0.50 16 9 N -0.52 -9.65 5.01 -222.57 -1.12 -10.77 16 10 C 0.05 1.17 4.76 -3.82 -0.02 1.15 16 11 C 0.03 0.66 3.52 -27.89 -0.10 0.56 16 12 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 13 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 16 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H 0.08 1.73 5.18 -51.93 -0.27 1.46 16 21 H 0.06 0.99 7.89 -51.93 -0.41 0.58 16 22 H 0.05 0.81 6.65 -51.93 -0.35 0.47 16 23 H 0.33 3.29 9.06 -39.29 -0.36 2.94 16 24 H 0.35 4.34 7.02 -39.29 -0.28 4.06 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.85 8.06 -51.93 -0.42 0.44 16 27 H 0.04 0.58 7.94 -51.93 -0.41 0.17 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.03 0.75 7.74 -51.93 -0.40 0.35 16 32 H 0.02 0.60 6.02 -51.93 -0.31 0.29 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 257.83 15.07 3.89 3.89 Total: -1.00 -29.84 257.83 -7.63 -37.47 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.24 Total: 2.89 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -0.85 Total: -13.76 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.41 Total: -47.32 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.84 -7.63 -37.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307463805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.229 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds