Wall clock time and date at job start Mon Mar 30 2020 02:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.50877 * 2 1 4 4 N 1.46954 * 109.49347 * 120.06325 * 2 1 3 5 5 C 1.46961 * 110.88027 * 60.63843 * 4 2 1 6 6 C 1.53049 * 109.36212 * 59.32899 * 5 4 2 7 7 N 1.46956 * 109.37889 * 301.58202 * 6 5 4 8 8 C 1.46907 * 111.00063 * 183.19787 * 7 6 5 9 9 C 1.50710 * 109.46537 * 66.04815 * 8 7 6 10 10 H 1.07997 * 119.99821 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99610 * 180.02562 * 9 8 7 12 12 N 1.31509 * 119.99930 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99796 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46873 * 89.99453 * 13 11 9 15 15 H 1.48493 * 109.47212 * 209.99797 * 13 11 9 16 16 H 1.48497 * 109.46952 * 329.99929 * 13 11 9 17 17 C 1.46998 * 110.85606 * 59.31765 * 7 6 5 18 18 H 1.08997 * 109.49044 * 60.65998 * 17 7 6 19 19 C 1.53007 * 109.50195 * 180.71184 * 17 7 6 20 20 H 1.09005 * 109.46686 * 299.94079 * 1 2 3 21 21 H 1.08998 * 109.47299 * 59.93976 * 1 2 3 22 22 H 1.09000 * 109.47416 * 179.97438 * 1 2 3 23 23 H 1.00896 * 111.00359 * 184.51326 * 4 2 1 24 24 H 1.08997 * 109.49026 * 299.35826 * 5 4 2 25 25 H 1.09001 * 109.48575 * 179.29016 * 5 4 2 26 26 H 1.09002 * 109.49200 * 61.56352 * 6 5 4 27 27 H 1.09002 * 109.48985 * 181.60771 * 6 5 4 28 28 H 1.08989 * 109.47352 * 186.04595 * 8 7 6 29 29 H 1.09001 * 109.47106 * 306.05350 * 8 7 6 30 30 H 0.97003 * 119.99744 * 180.02562 * 12 11 9 31 31 H 1.08994 * 109.47007 * 179.90564 * 19 17 7 32 32 H 1.08995 * 109.46659 * 299.90460 * 19 17 7 33 33 H 1.08997 * 109.46825 * 59.90793 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 7 2.0203 -0.6940 1.1989 5 6 1.5605 -2.0896 1.2212 6 6 2.0711 -2.8121 -0.0276 7 7 1.5807 -2.1186 -1.2269 8 6 1.9875 -2.8269 -2.4480 9 6 1.3013 -4.1675 -2.5032 10 1 0.6298 -4.4635 -1.7108 11 6 1.5307 -5.0161 -3.5655 12 7 2.3480 -4.6554 -4.5306 13 14 0.6796 -6.6775 -3.6343 14 1 -0.6171 -6.5403 -4.3451 15 1 1.5414 -7.6455 -4.3591 16 1 0.4377 -7.1673 -2.2535 17 6 2.0406 -0.7226 -1.2490 18 1 3.1302 -0.6988 -1.2629 19 6 1.4987 -0.0260 -2.4989 20 1 -0.3633 0.5129 0.8906 21 1 -0.3634 0.5148 -0.8894 22 1 -0.3634 -1.0276 -0.0005 23 1 3.0262 -0.6436 1.2599 24 1 0.4709 -2.1133 1.2352 25 1 1.9468 -2.5855 2.1117 26 1 3.1611 -2.8122 -0.0277 27 1 1.7074 -3.8397 -0.0275 28 1 1.7054 -2.2381 -3.3206 29 1 3.0678 -2.9718 -2.4411 30 1 2.5091 -5.2523 -5.2781 31 1 1.8386 1.0094 -2.5139 32 1 1.8626 -0.5408 -3.3881 33 1 0.4091 -0.0506 -2.4850 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307519342.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:05 Heat of formation + Delta-G solvation = 3.863951 kcal Electronic energy + Delta-G solvation = -13494.212291 eV Core-core repulsion = 11361.604538 eV Total energy + Delta-G solvation = -2132.607753 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.18116 -34.35946 -32.67038 -32.09158 -27.99664 -27.44824 -26.11685 -23.57923 -21.63541 -20.87181 -18.41473 -16.39315 -15.96567 -15.10825 -14.57127 -14.38698 -13.96447 -13.58788 -12.54275 -12.29047 -12.10236 -11.98741 -11.68859 -11.17520 -11.14897 -11.05117 -10.76567 -10.68957 -10.48704 -10.25869 -10.13586 -9.85925 -9.17674 -8.43499 -7.97388 -7.20915 -6.03910 -4.04881 3.30824 3.36736 3.40157 4.40134 4.57526 4.82865 5.29641 5.35685 5.51335 5.57410 5.70502 5.79874 5.91281 5.99182 6.03936 6.19109 6.24020 6.37452 6.46286 6.59555 6.63896 6.75249 6.84679 7.26483 7.33620 7.38583 7.67534 7.79290 8.10000 8.19875 8.55209 9.02608 9.59092 11.06986 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047930 B = 0.010254 C = 0.009364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.040180 B = 2729.983692 C = 2989.424664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.091 3.909 3 H 0.073 0.927 4 N -0.686 5.686 5 C 0.054 3.946 6 C 0.028 3.972 7 N -0.523 5.523 8 C 0.188 3.812 9 C -0.506 4.506 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.898 3.102 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.274 1.274 17 C 0.048 3.952 18 H 0.023 0.977 19 C -0.143 4.143 20 H 0.046 0.954 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.332 0.668 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.016 0.984 27 H 0.086 0.914 28 H 0.039 0.961 29 H -0.014 1.014 30 H 0.261 0.739 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 7.152 7.655 10.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.020 4.020 3 H 0.091 0.909 4 N -0.314 5.314 5 C -0.076 4.076 6 C -0.102 4.102 7 N -0.249 5.249 8 C 0.063 3.937 9 C -0.544 4.544 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.199 1.199 17 C -0.063 4.063 18 H 0.041 0.959 19 C -0.201 4.201 20 H 0.065 0.935 21 H 0.075 0.925 22 H 0.090 0.910 23 H 0.148 0.852 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.034 0.966 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.003 0.997 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.926 7.323 7.923 10.959 hybrid contribution 1.228 -1.424 -1.017 2.138 sum -0.697 5.899 6.906 9.109 Atomic orbital electron populations 1.21756 0.94024 1.03163 1.00330 1.21611 0.96704 0.96295 0.87366 0.90889 1.60888 1.15704 1.15140 1.39629 1.22180 1.01615 0.87418 0.96367 1.22660 0.96317 1.00067 0.91153 1.62269 1.59090 0.99785 1.03757 1.19823 0.93752 0.93530 0.86552 1.21159 1.26295 1.00325 1.06671 0.91965 1.24989 0.95427 0.98606 0.95626 1.69959 1.36355 1.37048 1.10522 0.86505 0.79352 0.83491 0.78103 1.20622 1.21355 1.19883 1.22269 0.96002 0.91815 0.96230 0.95909 1.21891 1.02064 0.98428 0.97735 0.93493 0.92502 0.90980 0.85156 0.90069 0.91380 0.96596 0.89551 0.94313 0.99665 0.92961 0.93509 0.91753 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.44 37.16 0.31 -1.73 16 2 C 0.09 1.40 3.24 -67.65 -0.22 1.18 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 N -0.69 -10.32 6.70 -106.59 -0.71 -11.03 16 5 C 0.05 0.86 6.34 -3.77 -0.02 0.83 16 6 C 0.03 0.55 5.42 -3.77 -0.02 0.53 16 7 N -0.52 -11.24 3.84 -227.88 -0.87 -12.11 16 8 C 0.19 4.93 4.49 -4.97 -0.02 4.90 16 9 C -0.51 -14.24 8.47 -34.43 -0.29 -14.53 16 10 H 0.06 1.74 7.12 -52.49 -0.37 1.36 16 11 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 12 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 13 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 C 0.05 0.87 2.25 -67.62 -0.15 0.72 16 18 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 19 C -0.14 -2.49 8.50 37.16 0.32 -2.17 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.06 0.82 6.41 -51.93 -0.33 0.48 16 22 H 0.07 1.24 5.94 -51.93 -0.31 0.93 16 23 H 0.33 4.67 8.89 -39.29 -0.35 4.32 16 24 H 0.08 1.34 6.34 -51.93 -0.33 1.01 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 1.83 6.78 -51.93 -0.35 1.48 16 28 H 0.04 1.07 5.74 -51.94 -0.30 0.77 16 29 H -0.01 -0.41 8.12 -51.93 -0.42 -0.83 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.26 6.16 -51.93 -0.32 0.94 16 33 H 0.06 1.13 6.40 -51.93 -0.33 0.80 16 LS Contribution 252.36 15.07 3.80 3.80 Total: -1.00 -29.29 252.36 -7.36 -36.65 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.09 Total: 0.88 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.20 Total: -8.81 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.85 Total: -49.25 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.29 -7.36 -36.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307519342.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.515 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds