Wall clock time and date at job start Mon Mar 30 2020 02:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.50877 * 2 1 4 4 N 1.46954 * 109.49347 * 120.06325 * 2 1 3 5 5 C 1.46961 * 110.88027 * 60.63843 * 4 2 1 6 6 C 1.53049 * 109.36212 * 59.32899 * 5 4 2 7 7 N 1.46956 * 109.37889 * 301.58202 * 6 5 4 8 8 C 1.46907 * 111.00063 * 183.19787 * 7 6 5 9 9 C 1.50710 * 109.46537 * 66.04815 * 8 7 6 10 10 H 1.07997 * 119.99821 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99610 * 180.02562 * 9 8 7 12 12 N 1.31509 * 119.99930 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99796 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46873 * 89.99453 * 13 11 9 15 15 H 1.48493 * 109.47212 * 209.99797 * 13 11 9 16 16 H 1.48497 * 109.46952 * 329.99929 * 13 11 9 17 17 C 1.46998 * 110.85606 * 59.31765 * 7 6 5 18 18 H 1.08997 * 109.49044 * 60.65998 * 17 7 6 19 19 C 1.53007 * 109.50195 * 180.71184 * 17 7 6 20 20 H 1.09005 * 109.46686 * 299.94079 * 1 2 3 21 21 H 1.08998 * 109.47299 * 59.93976 * 1 2 3 22 22 H 1.09000 * 109.47416 * 179.97438 * 1 2 3 23 23 H 1.00896 * 111.00359 * 184.51326 * 4 2 1 24 24 H 1.08997 * 109.49026 * 299.35826 * 5 4 2 25 25 H 1.09001 * 109.48575 * 179.29016 * 5 4 2 26 26 H 1.09002 * 109.49200 * 61.56352 * 6 5 4 27 27 H 1.09002 * 109.48985 * 181.60771 * 6 5 4 28 28 H 1.08989 * 109.47352 * 186.04595 * 8 7 6 29 29 H 1.09001 * 109.47106 * 306.05350 * 8 7 6 30 30 H 0.97003 * 119.99744 * 180.02562 * 12 11 9 31 31 H 1.08994 * 109.47007 * 179.90564 * 19 17 7 32 32 H 1.08995 * 109.46659 * 299.90460 * 19 17 7 33 33 H 1.08997 * 109.46825 * 59.90793 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 7 2.0203 -0.6940 1.1989 5 6 1.5605 -2.0896 1.2212 6 6 2.0711 -2.8121 -0.0276 7 7 1.5807 -2.1186 -1.2269 8 6 1.9875 -2.8269 -2.4480 9 6 1.3013 -4.1675 -2.5032 10 1 0.6298 -4.4635 -1.7108 11 6 1.5307 -5.0161 -3.5655 12 7 2.3480 -4.6554 -4.5306 13 14 0.6796 -6.6775 -3.6343 14 1 -0.6171 -6.5403 -4.3451 15 1 1.5414 -7.6455 -4.3591 16 1 0.4377 -7.1673 -2.2535 17 6 2.0406 -0.7226 -1.2490 18 1 3.1302 -0.6988 -1.2629 19 6 1.4987 -0.0260 -2.4989 20 1 -0.3633 0.5129 0.8906 21 1 -0.3634 0.5148 -0.8894 22 1 -0.3634 -1.0276 -0.0005 23 1 3.0262 -0.6436 1.2599 24 1 0.4709 -2.1133 1.2352 25 1 1.9468 -2.5855 2.1117 26 1 3.1611 -2.8122 -0.0277 27 1 1.7074 -3.8397 -0.0275 28 1 1.7054 -2.2381 -3.3206 29 1 3.0678 -2.9718 -2.4411 30 1 2.5091 -5.2523 -5.2781 31 1 1.8386 1.0094 -2.5139 32 1 1.8626 -0.5408 -3.3881 33 1 0.4091 -0.0506 -2.4850 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307519342.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:05 Heat of formation + Delta-G solvation = -17.780191 kcal Electronic energy + Delta-G solvation = -13495.150852 eV Core-core repulsion = 11361.604538 eV Total energy + Delta-G solvation = -2133.546314 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.65953 -36.09542 -34.36314 -33.84184 -29.60213 -29.01772 -27.74884 -25.36550 -23.18368 -22.54823 -19.84319 -18.53180 -17.37814 -16.73338 -16.31703 -16.01991 -15.48732 -15.21054 -14.28749 -14.08098 -13.76152 -13.28961 -13.17536 -12.98624 -12.72194 -12.54521 -12.50824 -12.34594 -12.08061 -11.81779 -11.72155 -11.45636 -11.22646 -10.61426 -9.38392 -8.95939 -8.23257 -6.33160 1.38251 1.39843 1.50769 2.37384 3.08424 3.16810 3.36564 3.94977 4.12631 4.19535 4.28793 4.34710 4.52016 4.61932 4.73501 4.82821 4.91674 4.96937 5.07800 5.08977 5.13853 5.26244 5.32200 5.42524 5.54801 5.62286 6.01307 6.06445 6.31093 6.48807 6.63979 6.83148 7.36387 8.87864 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047930 B = 0.010254 C = 0.009364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.040180 B = 2729.983692 C = 2989.424664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.097 3.903 3 H 0.100 0.900 4 N -0.676 5.676 5 C 0.067 3.933 6 C 0.028 3.972 7 N -0.526 5.526 8 C 0.204 3.796 9 C -0.522 4.522 10 H 0.061 0.939 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.969 3.031 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.264 1.264 17 C 0.042 3.958 18 H 0.011 0.989 19 C -0.138 4.138 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.048 0.952 23 H 0.341 0.659 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.006 0.994 27 H 0.064 0.936 28 H 0.018 0.982 29 H -0.053 1.053 30 H 0.264 0.736 31 H 0.081 0.919 32 H 0.031 0.969 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 7.695 9.088 12.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.014 4.014 3 H 0.118 0.882 4 N -0.304 5.304 5 C -0.063 4.063 6 C -0.102 4.102 7 N -0.251 5.251 8 C 0.078 3.922 9 C -0.561 4.561 10 H 0.080 0.920 11 C -0.197 4.197 12 N -0.576 5.576 13 Si 0.794 3.206 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.188 1.188 17 C -0.068 4.068 18 H 0.029 0.971 19 C -0.196 4.196 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.067 0.933 23 H 0.158 0.842 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.024 0.976 27 H 0.083 0.917 28 H 0.036 0.964 29 H -0.035 1.035 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.783 7.886 9.381 12.567 hybrid contribution 1.535 -1.535 -1.460 2.616 sum -1.248 6.351 7.921 10.229 Atomic orbital electron populations 1.21713 0.93513 1.01998 1.01603 1.21666 0.97056 0.97080 0.85582 0.88161 1.60912 1.16439 1.14147 1.38923 1.22103 1.01476 0.87682 0.95034 1.22721 0.95696 0.99549 0.92222 1.62218 1.59155 1.01242 1.02529 1.19465 0.91097 0.93354 0.88283 1.21461 1.26408 1.01389 1.06797 0.92047 1.25923 0.96001 1.02709 0.95092 1.70091 1.37685 1.38622 1.11183 0.85380 0.78269 0.78412 0.78555 1.19766 1.20802 1.18828 1.22486 0.95496 0.90204 0.98600 0.97065 1.21847 1.01983 0.99928 0.95818 0.91650 0.91827 0.93320 0.84202 0.90234 0.88797 0.97606 0.91733 0.96369 1.03496 0.92728 0.90003 0.95019 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 8.44 71.98 0.61 -3.00 16 2 C 0.10 2.73 3.24 44.92 0.15 2.87 16 3 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 4 N -0.68 -18.43 6.70 -491.13 -3.29 -21.72 16 5 C 0.07 2.01 6.34 86.31 0.55 2.55 16 6 C 0.03 1.11 5.42 86.31 0.47 1.58 16 7 N -0.53 -22.95 3.84 -874.87 -3.36 -26.31 16 8 C 0.20 11.15 4.49 85.56 0.38 11.53 16 9 C -0.52 -30.14 8.47 25.60 0.22 -29.92 16 10 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 11 C 0.00 0.03 5.46 84.66 0.46 0.49 16 12 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 13 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 17 C 0.04 1.53 2.25 44.92 0.10 1.63 16 18 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 19 C -0.14 -4.71 8.50 71.98 0.61 -4.10 16 20 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 21 H 0.06 1.66 6.41 -2.39 -0.02 1.64 16 22 H 0.05 1.58 5.94 -2.39 -0.01 1.56 16 23 H 0.34 8.61 8.89 -89.70 -0.80 7.81 16 24 H 0.08 2.46 6.34 -2.39 -0.02 2.45 16 25 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.06 2.79 6.78 -2.39 -0.02 2.78 16 28 H 0.02 1.07 5.74 -2.39 -0.01 1.05 16 29 H -0.05 -3.20 8.12 -2.39 -0.02 -3.22 16 30 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.03 1.27 6.16 -2.39 -0.01 1.25 16 33 H 0.07 2.23 6.40 -2.39 -0.02 2.22 16 Total: -1.00 -64.01 252.36 -0.50 -64.51 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.29 Total: 9.93 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 3.54 Total: -16.37 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -6.36 Total: -104.94 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.01 -0.50 -64.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307519342.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.731 kcal (2) G-P(sol) polarization free energy of solvation -64.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds