Wall clock time and date at job start Mon Mar 30 2020 02:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.49087 * 2 1 4 4 N 1.46961 * 109.48681 * 120.06452 * 2 1 3 5 5 C 1.46954 * 110.88027 * 179.29235 * 4 2 1 6 6 C 1.53062 * 109.35871 * 300.67510 * 5 4 2 7 7 N 1.46998 * 109.37366 * 58.40489 * 6 5 4 8 8 C 1.46907 * 111.02285 * 176.82000 * 7 6 5 9 9 C 1.50691 * 109.47248 * 293.78530 * 8 7 6 10 10 H 1.07996 * 120.00443 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00319 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99718 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00410 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46627 * 60.00093 * 13 11 9 15 15 H 1.48498 * 109.47116 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47027 * 300.00156 * 13 11 9 17 17 C 1.46956 * 110.85606 * 300.68752 * 7 6 5 18 18 H 1.09002 * 109.49189 * 299.33607 * 17 7 6 19 19 C 1.52997 * 109.48693 * 179.29401 * 17 7 6 20 20 H 1.09008 * 109.47270 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47521 * 300.04559 * 1 2 3 22 22 H 1.09004 * 109.47320 * 60.04733 * 1 2 3 23 23 H 1.00900 * 110.99714 * 303.15646 * 4 2 1 24 24 H 1.09002 * 109.48968 * 60.63766 * 5 4 2 25 25 H 1.08994 * 109.49291 * 180.71139 * 5 4 2 26 26 H 1.09005 * 109.48298 * 178.37012 * 6 5 4 27 27 H 1.08997 * 109.48789 * 298.43087 * 6 5 4 28 28 H 1.08994 * 109.47375 * 53.78996 * 8 7 6 29 29 H 1.09002 * 109.46249 * 173.78925 * 8 7 6 30 30 H 0.96989 * 120.00040 * 180.02562 * 12 11 9 31 31 H 1.09002 * 109.47158 * 300.04468 * 19 17 7 32 32 H 1.08995 * 109.47504 * 60.04647 * 19 17 7 33 33 H 1.08998 * 109.47109 * 180.02562 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 7 2.0203 -0.6941 1.1990 5 6 3.4893 -0.7267 1.2215 6 6 3.9999 -1.4492 -0.0275 7 7 3.5096 -0.7551 -1.2270 8 6 4.0408 -1.3747 -2.4485 9 6 5.5329 -1.1723 -2.5066 10 1 6.0365 -0.6372 -1.7152 11 6 6.2553 -1.6701 -3.5702 12 7 5.6420 -2.3213 -4.5344 13 14 8.1049 -1.4185 -3.6426 14 1 8.7366 -2.0466 -2.4545 15 1 8.6417 -2.0450 -4.8773 16 1 8.4066 0.0355 -3.6532 17 6 2.0406 -0.7225 -1.2489 18 1 1.6544 -1.7417 -1.2629 19 6 1.5652 0.0208 -2.4988 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5145 0.8895 22 1 -0.3634 0.5131 -0.8904 23 1 1.6552 -0.2684 2.0378 24 1 3.8755 0.2925 1.2354 25 1 3.8277 -1.2564 2.1119 26 1 5.0900 -1.4491 -0.0274 27 1 3.6360 -2.4766 -0.0276 28 1 3.8189 -2.4419 -2.4406 29 1 3.5773 -0.9137 -3.3207 30 1 6.1502 -2.6719 -5.2824 31 1 1.9515 1.0399 -2.4845 32 1 1.9296 -0.4935 -3.3880 33 1 0.4756 0.0452 -2.5146 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307519345.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:12 Heat of formation + Delta-G solvation = -21.259758 kcal Electronic energy + Delta-G solvation = -13331.892808 eV Core-core repulsion = 11198.195609 eV Total energy + Delta-G solvation = -2133.697199 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.34059 -36.19126 -34.43234 -34.15675 -29.88053 -28.91856 -27.59934 -25.30018 -22.82117 -22.42220 -20.40558 -18.52922 -17.24331 -16.58840 -16.41662 -16.09881 -15.31046 -15.15681 -14.55803 -14.11558 -13.94936 -13.28801 -13.19726 -12.95499 -12.81912 -12.60018 -12.51738 -12.38423 -12.17010 -11.81336 -11.73703 -11.23272 -11.09710 -10.58952 -9.42795 -9.02982 -8.21223 -6.31524 1.39334 1.42958 1.50940 2.39092 3.10239 3.23717 3.25110 3.87470 4.11341 4.20077 4.36176 4.41467 4.49445 4.56961 4.67973 4.84225 4.91336 4.96257 5.00953 5.05394 5.13200 5.25470 5.28177 5.36771 5.43035 5.63642 5.99355 6.08136 6.31797 6.59082 6.67001 6.84312 7.37748 8.89858 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052723 B = 0.009641 C = 0.008551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.952228 B = 2903.453338 C = 3273.820247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.096 3.904 3 H 0.040 0.960 4 N -0.691 5.691 5 C 0.071 3.929 6 C 0.064 3.936 7 N -0.541 5.541 8 C 0.205 3.795 9 C -0.525 4.525 10 H 0.061 0.939 11 C 0.000 4.000 12 N -0.935 5.935 13 Si 0.971 3.029 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.268 1.268 17 C 0.081 3.919 18 H 0.015 0.985 19 C -0.139 4.139 20 H 0.055 0.945 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.355 0.645 24 H 0.036 0.964 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.009 0.991 28 H -0.050 1.050 29 H 0.020 0.980 30 H 0.265 0.735 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 5.093 9.903 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.014 4.014 3 H 0.058 0.942 4 N -0.325 5.325 5 C -0.059 4.059 6 C -0.065 4.065 7 N -0.266 5.266 8 C 0.079 3.921 9 C -0.563 4.563 10 H 0.079 0.921 11 C -0.197 4.197 12 N -0.575 5.575 13 Si 0.795 3.205 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.193 1.193 17 C -0.028 4.028 18 H 0.033 0.967 19 C -0.196 4.196 20 H 0.074 0.926 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.174 0.826 24 H 0.054 0.946 25 H 0.115 0.885 26 H 0.085 0.915 27 H 0.027 0.973 28 H -0.033 1.033 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.514 4.866 9.487 13.044 hybrid contribution 0.984 -0.271 -0.401 1.097 sum -6.530 4.595 9.086 12.096 Atomic orbital electron populations 1.21812 0.91964 1.02528 1.03137 1.21499 0.96349 0.94709 0.88875 0.94208 1.60493 1.08236 1.58528 1.05201 1.21925 0.87879 0.99054 0.97038 1.22027 0.99702 0.94451 0.90282 1.62288 1.07322 1.53963 1.02989 1.19450 0.94902 0.89748 0.88021 1.21432 0.93024 1.35008 1.06872 0.92067 1.25945 1.04037 0.94737 0.95031 1.70087 1.37972 1.38292 1.11159 0.85414 0.78724 0.78726 0.77618 1.19254 1.20708 1.19252 1.21743 0.87895 0.97002 0.96200 0.96730 1.21878 1.01512 1.00279 0.95976 0.92551 0.90587 0.90799 0.82562 0.94611 0.88509 0.91469 0.97307 1.03269 0.96233 0.92666 0.92305 0.94526 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.15 71.98 0.66 -2.35 16 2 C 0.10 2.84 2.70 44.92 0.12 2.96 16 3 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 4 N -0.69 -19.46 6.55 -491.12 -3.21 -22.68 16 5 C 0.07 2.20 6.72 86.31 0.58 2.78 16 6 C 0.06 2.68 5.43 86.31 0.47 3.15 16 7 N -0.54 -24.91 4.52 -874.90 -3.95 -28.86 16 8 C 0.20 11.47 4.49 85.55 0.38 11.86 16 9 C -0.53 -30.77 8.47 25.60 0.22 -30.55 16 10 H 0.06 3.50 7.13 -2.91 -0.02 3.48 16 11 C 0.00 0.02 5.46 84.65 0.46 0.49 16 12 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 13 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 C 0.08 3.10 2.07 44.92 0.09 3.20 16 18 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 19 C -0.14 -4.91 8.58 71.98 0.62 -4.30 16 20 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 21 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.07 1.48 6.47 -2.38 -0.02 1.47 16 23 H 0.35 7.59 8.83 -89.69 -0.79 6.80 16 24 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.07 2.99 6.80 -2.38 -0.02 2.98 16 27 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 28 H -0.05 -3.13 8.12 -2.39 -0.02 -3.15 16 29 H 0.02 1.16 5.73 -2.39 -0.01 1.15 16 30 H 0.26 15.31 8.31 -92.72 -0.77 14.54 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.50 6.15 -2.39 -0.01 1.48 16 33 H 0.09 2.40 6.48 -2.39 -0.02 2.39 16 Total: -1.00 -66.56 257.43 -0.97 -67.53 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.29 Total: 6.98 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 3.60 Total: -12.78 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -6.88 Total: -108.86 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -66.56 -0.97 -67.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307519345.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.267 kcal (2) G-P(sol) polarization free energy of solvation -66.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds