Wall clock time and date at job start Mon Mar 30 2020 02:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.46391 * 2 1 4 4 C 1.54379 * 110.41443 * 122.41483 * 2 1 3 5 5 C 1.54263 * 105.06207 * 142.63349 * 4 2 1 6 6 H 1.09000 * 110.40534 * 241.05912 * 5 4 2 7 7 N 1.46501 * 110.32248 * 118.89533 * 5 4 2 8 8 C 1.46496 * 120.00301 * 302.90693 * 7 5 4 9 9 C 1.36937 * 119.99785 * 122.91248 * 7 5 4 10 10 H 1.08002 * 120.00018 * 23.85971 * 9 7 5 11 11 C 1.38811 * 119.99915 * 203.86638 * 9 7 5 12 12 N 1.31620 * 120.00079 * 10.83680 * 11 9 7 13 13 Si 1.86801 * 120.00232 * 190.84335 * 11 9 7 14 14 H 1.48505 * 109.46959 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47351 * 119.99651 * 13 11 9 16 16 H 1.48496 * 109.47255 * 240.00014 * 13 11 9 17 17 C 1.54377 * 105.06097 * 359.97438 * 5 4 2 18 18 N 1.48568 * 104.69757 * 336.09235 * 17 5 4 19 19 C 1.46898 * 110.99586 * 159.10099 * 18 17 5 20 20 H 1.09000 * 109.46961 * 297.58629 * 1 2 3 21 21 H 1.08997 * 109.47369 * 57.58770 * 1 2 3 22 22 H 1.08998 * 109.46998 * 177.58907 * 1 2 3 23 23 H 1.08997 * 110.32492 * 23.73200 * 4 2 1 24 24 H 1.09004 * 110.32219 * 261.52618 * 4 2 1 25 25 H 1.08997 * 109.47160 * 94.95188 * 8 7 5 26 26 H 1.09005 * 109.47175 * 214.95920 * 8 7 5 27 27 H 1.09008 * 109.46917 * 334.95339 * 8 7 5 28 28 H 0.96999 * 119.99880 * 179.97438 * 12 11 9 29 29 H 1.09003 * 110.41041 * 94.92420 * 17 5 4 30 30 H 1.08997 * 110.41287 * 217.25067 * 17 5 4 31 31 H 1.08993 * 109.47640 * 59.87261 * 19 18 17 32 32 H 1.09001 * 109.46631 * 179.87251 * 19 18 17 33 33 H 1.08998 * 109.47057 * 299.86966 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0685 -0.7756 1.2214 5 6 3.3178 -1.5188 0.7053 6 1 3.1879 -2.5963 0.8066 7 7 4.5092 -1.0798 1.4362 8 6 4.8763 0.3383 1.4543 9 6 5.2796 -1.9950 2.1025 10 1 5.2675 -3.0322 1.8017 11 6 6.0761 -1.5897 3.1647 12 7 5.9356 -0.3823 3.6694 13 14 7.3476 -2.7578 3.8777 14 1 7.3066 -4.0451 3.1384 15 1 8.6992 -2.1561 3.7502 16 1 7.0473 -3.0012 5.3114 17 6 3.4288 -1.1303 -0.7846 18 7 2.0482 -0.7480 -1.1783 19 6 2.0585 0.0976 -2.3795 20 1 -0.3633 0.4759 0.9108 21 1 -0.3634 0.5508 -0.8675 22 1 -0.3633 -1.0267 -0.0432 23 1 1.3236 -1.4880 1.5759 24 1 2.3417 -0.0841 2.0185 25 1 4.4712 0.8071 2.3510 26 1 5.9623 0.4325 1.4538 27 1 4.4686 0.8305 0.5712 28 1 6.4919 -0.0992 4.4119 29 1 4.1068 -0.2858 -0.9078 30 1 3.7707 -1.9806 -1.3748 31 1 2.5206 -0.4466 -3.2030 32 1 1.0352 0.3611 -2.6470 33 1 2.6271 1.0058 -2.1796 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307581072.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:04 Heat of formation + Delta-G solvation = 28.197526 kcal Electronic energy + Delta-G solvation = -13385.405479 eV Core-core repulsion = 11253.852908 eV Total energy + Delta-G solvation = -2131.552570 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.76583 -35.02898 -31.73502 -31.22412 -28.96647 -25.99375 -25.46006 -24.50513 -22.31408 -19.78628 -19.01382 -16.83766 -15.55294 -14.77598 -14.57667 -14.17079 -13.55415 -13.29443 -12.64412 -12.45977 -12.13620 -12.09821 -11.66817 -11.16535 -10.88443 -10.78562 -10.70441 -10.51084 -10.44602 -10.33238 -10.02028 -9.76638 -9.66801 -8.53162 -8.09270 -6.70529 -5.69547 -3.16726 3.39284 3.46361 3.48645 4.36107 4.56866 5.18855 5.26739 5.46581 5.54682 5.60524 5.69885 5.74147 5.90338 5.94589 6.00967 6.08615 6.18621 6.30943 6.37364 6.56245 6.62565 6.76972 6.89773 7.00858 7.29886 7.41023 7.45354 7.77219 7.83633 8.44106 9.27146 9.90457 10.40248 11.35291 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062359 B = 0.009189 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.902833 B = 3046.549056 C = 3134.681860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.057 3.943 3 H 0.045 0.955 4 C -0.136 4.136 5 C 0.176 3.824 6 H 0.071 0.929 7 N -0.594 5.594 8 C 0.165 3.835 9 C -0.253 4.253 10 H 0.069 0.931 11 C 0.001 3.999 12 N -0.909 5.909 13 Si 0.905 3.095 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.290 1.290 17 C 0.015 3.985 18 N -0.514 5.514 19 C 0.016 3.984 20 H 0.055 0.945 21 H 0.045 0.955 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.030 0.970 26 H 0.040 0.960 27 H -0.005 1.005 28 H 0.251 0.749 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.286 1.354 -7.684 10.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.051 4.051 3 H 0.063 0.937 4 C -0.176 4.176 5 C 0.067 3.933 6 H 0.089 0.911 7 N -0.316 5.316 8 C 0.020 3.980 9 C -0.383 4.383 10 H 0.087 0.913 11 C -0.197 4.197 12 N -0.554 5.554 13 Si 0.735 3.265 14 H -0.203 1.203 15 H -0.217 1.217 16 H -0.217 1.217 17 C -0.115 4.115 18 N -0.239 5.239 19 C -0.133 4.133 20 H 0.074 0.926 21 H 0.064 0.936 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.013 0.987 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.495 0.971 -7.676 10.773 hybrid contribution 1.244 0.301 0.568 1.400 sum -6.252 1.272 -7.108 9.551 Atomic orbital electron populations 1.21690 0.94731 1.01987 1.00575 1.22693 0.95105 0.95815 0.91480 0.93695 1.22972 0.98616 0.99549 0.96483 1.21023 0.86241 0.97414 0.88626 0.91065 1.44004 1.25003 1.04355 1.58191 1.20716 0.98546 0.83602 0.95104 1.19295 1.19089 0.91058 1.08836 0.91319 1.25059 1.01067 0.96963 0.96643 1.70070 1.40919 1.18313 1.26120 0.86169 0.81304 0.80283 0.78713 1.20300 1.21700 1.21742 1.23740 0.88451 1.00110 0.99169 1.65411 1.19327 1.36403 1.02725 1.22451 1.01040 0.95659 0.94128 0.92643 0.93593 0.92024 0.92076 0.90731 0.95154 0.94111 0.98699 0.93865 0.93491 0.91079 0.91858 0.91962 0.95857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.32 37.16 0.35 -1.46 16 2 C 0.06 0.95 2.90 -65.90 -0.19 0.76 16 3 H 0.05 0.77 7.91 -51.93 -0.41 0.36 16 4 C -0.14 -2.62 6.02 -25.35 -0.15 -2.77 16 5 C 0.18 3.78 3.54 -66.55 -0.24 3.54 16 6 H 0.07 1.55 7.92 -51.93 -0.41 1.14 16 7 N -0.59 -15.14 2.85 -171.90 -0.49 -15.63 16 8 C 0.16 4.14 7.74 59.84 0.46 4.60 16 9 C -0.25 -7.05 9.60 -15.06 -0.14 -7.19 16 10 H 0.07 1.87 7.84 -52.49 -0.41 1.46 16 11 C 0.00 0.02 5.14 -17.43 -0.09 -0.07 16 12 N -0.91 -26.75 10.64 55.49 0.59 -26.16 16 13 Si 0.91 22.07 29.57 -169.99 -5.03 17.04 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 C 0.01 0.28 5.99 -2.18 -0.01 0.27 16 18 N -0.51 -8.55 5.35 -230.09 -1.23 -9.78 16 19 C 0.02 0.23 9.43 60.06 0.57 0.80 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.04 0.56 7.67 -51.93 -0.40 0.16 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 1.11 7.86 -51.93 -0.41 0.70 16 24 H 0.07 1.60 7.28 -51.93 -0.38 1.22 16 25 H 0.03 0.82 7.24 -51.93 -0.38 0.44 16 26 H 0.04 1.10 7.33 -51.93 -0.38 0.72 16 27 H -0.01 -0.12 6.46 -51.92 -0.34 -0.46 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.05 0.94 6.15 -51.93 -0.32 0.62 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.76 7.64 -51.93 -0.40 0.36 16 33 H 0.02 0.33 7.98 -51.93 -0.41 -0.09 16 LS Contribution 259.56 15.07 3.91 3.91 Total: -1.00 -29.17 259.56 -7.16 -36.33 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -5.47 Total: -4.20 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 0.55 Total: -1.53 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -1.13 Total: -51.56 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.17 -7.16 -36.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307581072.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.532 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds