Wall clock time and date at job start Mon Mar 30 2020 02:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.36659 * 2 1 4 4 C 1.54380 * 110.41635 * 237.64788 * 2 1 3 5 5 C 1.54258 * 105.06354 * 217.25106 * 4 2 1 6 6 H 1.09003 * 110.32318 * 118.99607 * 5 4 2 7 7 N 1.46497 * 110.32283 * 241.10184 * 5 4 2 8 8 C 1.46494 * 120.00128 * 59.99757 * 7 5 4 9 9 C 1.36938 * 119.99703 * 240.00042 * 7 5 4 10 10 H 1.07991 * 120.00349 * 23.18766 * 9 7 5 11 11 C 1.38818 * 119.99643 * 203.18911 * 9 7 5 12 12 N 1.31611 * 120.00133 * 11.62264 * 11 9 7 13 13 Si 1.86801 * 119.99855 * 191.62208 * 11 9 7 14 14 H 1.48497 * 109.47208 * 59.99975 * 13 11 9 15 15 H 1.48493 * 109.47066 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47050 * 300.00087 * 13 11 9 17 17 C 1.54380 * 105.06089 * 359.97438 * 5 4 2 18 18 N 1.48563 * 104.59481 * 23.85567 * 17 5 4 19 19 C 1.46894 * 111.00159 * 200.96020 * 18 17 5 20 20 H 1.09000 * 109.46862 * 180.70194 * 1 2 3 21 21 H 1.08999 * 109.47046 * 300.70231 * 1 2 3 22 22 H 1.08991 * 109.47271 * 60.70429 * 1 2 3 23 23 H 1.09004 * 110.32033 * 336.14754 * 4 2 1 24 24 H 1.08993 * 110.32315 * 98.35102 * 4 2 1 25 25 H 1.09002 * 109.47503 * 93.99032 * 8 7 5 26 26 H 1.08998 * 109.47239 * 213.98777 * 8 7 5 27 27 H 1.09001 * 109.47496 * 333.99333 * 8 7 5 28 28 H 0.97003 * 120.00187 * 179.97438 * 12 11 9 29 29 H 1.09001 * 110.41202 * 142.62862 * 17 5 4 30 30 H 1.08999 * 110.41226 * 264.96085 * 17 5 4 31 31 H 1.08995 * 109.47361 * 175.41663 * 19 18 17 32 32 H 1.08997 * 109.47277 * 295.41633 * 19 18 17 33 33 H 1.09005 * 109.47044 * 55.41736 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2222 5 6 3.3196 -1.5156 -0.7077 6 1 3.1903 -2.5930 -0.8108 7 7 4.5094 -1.0745 -1.4397 8 6 4.9102 0.3342 -1.4052 9 6 5.2469 -1.9788 -2.1562 10 1 4.7915 -2.8959 -2.4995 11 6 6.5800 -1.7168 -2.4412 12 7 7.1988 -0.7234 -1.8390 13 14 7.4957 -2.7741 -3.6794 14 1 6.8223 -2.6853 -5.0000 15 1 8.8947 -2.2919 -3.8032 16 1 7.4981 -4.1859 -3.2189 17 6 3.4321 -1.1265 0.7820 18 7 2.0510 -0.7451 1.1747 19 6 2.0599 0.1025 2.3744 20 1 -0.3633 -1.0276 0.0126 21 1 -0.3633 0.5247 0.8836 22 1 -0.3633 0.5028 -0.8961 23 1 1.3244 -1.4878 -1.5762 24 1 2.3397 -0.0821 -2.0193 25 1 5.6425 0.4843 -0.6119 26 1 5.3507 0.6102 -2.3632 27 1 4.0356 0.9563 -1.2147 28 1 8.1304 -0.5405 -2.0379 29 1 3.7740 -1.9768 1.3722 30 1 4.1108 -0.2824 0.9042 31 1 1.0447 0.4338 2.5927 32 1 2.4455 -0.4679 3.2194 33 1 2.6961 0.9705 2.2013 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307581073.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:06 Heat of formation + Delta-G solvation = 8.430315 kcal Electronic energy + Delta-G solvation = -13388.053331 eV Core-core repulsion = 11255.643590 eV Total energy + Delta-G solvation = -2132.409741 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.28242 -36.90268 -33.60364 -32.57254 -30.69561 -28.07508 -26.81106 -26.01346 -24.11044 -21.14377 -20.72907 -18.84874 -17.38717 -16.31753 -16.18983 -15.67682 -15.20941 -14.80707 -14.41124 -14.21740 -13.58435 -13.34195 -13.03460 -12.85173 -12.75111 -12.47122 -12.32844 -12.23214 -12.03434 -11.96837 -11.92879 -11.65353 -11.30960 -10.62841 -9.46051 -8.78469 -7.83778 -5.32847 1.46421 1.48849 1.55542 2.49530 3.06060 3.29541 3.72180 3.83716 3.99116 4.22245 4.35601 4.46957 4.59382 4.60051 4.67199 4.76835 4.87168 4.96619 4.97716 5.00940 5.13363 5.22386 5.29786 5.41519 5.44234 5.59663 5.66039 5.90783 6.16111 6.33527 7.14081 7.86019 8.30965 9.19665 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062533 B = 0.009267 C = 0.008862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.657771 B = 3020.677252 C = 3158.681145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.060 3.940 3 H 0.038 0.962 4 C -0.128 4.128 5 C 0.166 3.834 6 H 0.063 0.937 7 N -0.608 5.608 8 C 0.187 3.813 9 C -0.267 4.267 10 H 0.071 0.929 11 C -0.054 4.054 12 N -0.940 5.940 13 Si 0.972 3.028 14 H -0.278 1.278 15 H -0.294 1.294 16 H -0.275 1.275 17 C 0.027 3.973 18 N -0.513 5.513 19 C 0.015 3.985 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.057 0.943 25 H -0.001 1.001 26 H 0.016 0.984 27 H 0.021 0.979 28 H 0.248 0.752 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.405 1.772 4.270 12.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.049 4.049 3 H 0.057 0.943 4 C -0.167 4.167 5 C 0.058 3.942 6 H 0.081 0.919 7 N -0.331 5.331 8 C 0.042 3.958 9 C -0.397 4.397 10 H 0.089 0.911 11 C -0.249 4.249 12 N -0.587 5.587 13 Si 0.800 3.200 14 H -0.204 1.204 15 H -0.220 1.220 16 H -0.201 1.201 17 C -0.103 4.103 18 N -0.238 5.238 19 C -0.134 4.134 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.087 0.913 23 H 0.097 0.903 24 H 0.076 0.924 25 H 0.017 0.983 26 H 0.035 0.965 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -11.571 1.368 4.387 12.450 hybrid contribution 1.645 0.384 -0.654 1.811 sum -9.926 1.752 3.733 10.749 Atomic orbital electron populations 1.21642 0.91803 1.02603 1.02147 1.22665 0.97260 0.94866 0.90093 0.94349 1.22844 0.97475 0.99372 0.97052 1.21251 0.86461 0.97274 0.89236 0.91857 1.44211 1.28428 1.04495 1.55937 1.20352 0.93830 0.83439 0.98212 1.19567 0.91789 1.01724 1.26588 0.91079 1.25840 0.97067 1.00045 1.01903 1.70227 1.10414 1.33388 1.44675 0.85271 0.77078 0.78491 0.79174 1.20382 1.22038 1.20054 1.23485 0.89555 0.99357 0.97877 1.65349 1.17122 1.37528 1.03773 1.22550 1.02347 0.95318 0.93172 0.91894 0.91868 0.91276 0.90348 0.92385 0.98262 0.96485 0.96011 0.94271 0.91497 0.95501 0.89468 0.91015 0.96338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 9.33 71.98 0.67 -2.15 16 2 C 0.06 1.79 2.88 45.06 0.13 1.92 16 3 H 0.04 1.21 7.97 -2.38 -0.02 1.19 16 4 C -0.13 -4.48 5.70 31.49 0.18 -4.30 16 5 C 0.17 7.04 3.54 45.89 0.16 7.21 16 6 H 0.06 2.75 7.92 -2.39 -0.02 2.73 16 7 N -0.61 -31.39 2.83 -697.80 -1.98 -33.36 16 8 C 0.19 9.57 7.42 127.77 0.95 10.52 16 9 C -0.27 -14.97 9.60 84.03 0.81 -14.17 16 10 H 0.07 3.86 7.84 -2.92 -0.02 3.84 16 11 C -0.05 -3.06 5.12 84.86 0.43 -2.63 16 12 N -0.94 -56.68 10.65 21.65 0.23 -56.45 16 13 Si 0.97 45.68 29.57 68.60 2.03 47.71 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 15 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 17 C 0.03 1.07 6.09 86.45 0.53 1.60 16 18 N -0.51 -16.32 5.34 -882.73 -4.72 -21.04 16 19 C 0.01 0.39 9.45 127.69 1.21 1.59 16 20 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.06 1.25 7.49 -2.39 -0.02 1.23 16 22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.08 2.48 7.86 -2.38 -0.02 2.47 16 24 H 0.06 2.19 7.14 -2.39 -0.02 2.17 16 25 H 0.00 -0.05 7.30 -2.39 -0.02 -0.07 16 26 H 0.02 0.92 7.24 -2.39 -0.02 0.90 16 27 H 0.02 0.97 7.01 -2.39 -0.02 0.95 16 28 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.03 1.16 6.67 -2.39 -0.02 1.15 16 31 H 0.09 1.85 7.44 -2.39 -0.02 1.83 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.02 0.50 7.98 -2.38 -0.02 0.48 16 Total: -1.00 -62.29 259.58 1.68 -60.61 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: 1.05 Total: 2.93 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 5.07 Total: -0.41 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -6.46 Total: -110.85 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -62.29 1.68 -60.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307581073.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.040 kcal (2) G-P(sol) polarization free energy of solvation -62.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds