Wall clock time and date at job start Mon Mar 30 2020 01:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99773 * 2 1 4 4 H 1.48501 * 109.47413 * 269.99755 * 3 2 1 5 5 H 1.48503 * 109.47240 * 29.99834 * 3 2 1 6 6 H 1.48499 * 109.47129 * 149.99724 * 3 2 1 7 7 C 1.37874 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00159 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99566 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46815 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47084 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47149 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.47081 * 179.97438 * 12 11 10 14 14 C 1.48080 * 110.99635 * 184.99834 * 13 12 11 15 15 C 1.54226 * 105.75047 * 145.34112 * 14 13 12 16 16 C 1.54558 * 104.50012 * 359.00165 * 15 14 13 17 17 N 1.46882 * 111.00086 * 302.25053 * 13 12 11 18 18 H 0.97006 * 119.99862 * 0.02562 * 1 2 3 19 19 H 1.08995 * 109.47678 * 59.99658 * 9 7 2 20 20 H 1.08999 * 109.47637 * 299.99359 * 9 7 2 21 21 H 1.08996 * 109.47206 * 60.00054 * 10 9 7 22 22 H 1.08996 * 109.47358 * 299.99970 * 10 9 7 23 23 H 1.08995 * 109.47435 * 59.99833 * 11 10 9 24 24 H 1.09008 * 109.47061 * 299.99841 * 11 10 9 25 25 H 1.09006 * 109.47013 * 60.00121 * 12 11 10 26 26 H 1.08996 * 109.47298 * 300.00107 * 12 11 10 27 27 H 1.09000 * 110.19478 * 26.27179 * 14 13 12 28 28 H 1.08994 * 110.26235 * 264.44586 * 14 13 12 29 29 H 1.09004 * 110.42528 * 117.75788 * 15 14 13 30 30 H 1.09004 * 110.42732 * 240.24096 * 15 14 13 31 31 H 1.08997 * 110.62580 * 95.81830 * 16 15 14 32 32 H 1.09004 * 110.62008 * 218.81760 * 16 15 14 33 33 H 1.00907 * 110.99558 * 79.88223 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5515 -2.6365 0.0022 12 6 6.0616 -4.0790 0.0028 13 7 7.5306 -4.0789 0.0021 14 6 8.0612 -5.4562 -0.1179 15 6 9.3507 -5.3366 -0.9554 16 6 9.4562 -3.8315 -1.2906 17 7 8.0565 -3.3478 -1.1582 18 1 -0.4850 0.8401 -0.0004 19 1 3.8745 -0.6799 0.8910 20 1 3.8752 -0.6804 -0.8889 21 1 3.6586 -3.1509 -0.8875 22 1 3.6579 -3.1498 0.8924 23 1 5.9149 -2.1219 0.8917 24 1 5.9149 -2.1234 -0.8883 25 1 5.6982 -4.5931 -0.8871 26 1 5.6983 -4.5925 0.8929 27 1 7.3394 -6.0944 -0.6276 28 1 8.2893 -5.8601 0.8684 29 1 10.2139 -5.6581 -0.3727 30 1 9.2668 -5.9250 -1.8692 31 1 10.1067 -3.3242 -0.5781 32 1 9.8167 -3.6895 -2.3094 33 1 8.0316 -2.3516 -0.9995 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400216444.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:05 Heat of formation + Delta-G solvation = 15.495452 kcal Electronic energy + Delta-G solvation = -12445.971990 eV Core-core repulsion = 10313.868616 eV Total energy + Delta-G solvation = -2132.103373 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.68316 -35.11596 -32.83453 -31.32428 -30.43751 -28.32022 -24.83354 -22.64235 -21.29484 -20.66166 -19.90593 -16.82089 -16.56067 -15.86074 -15.22453 -14.26377 -14.09248 -13.31825 -12.95372 -12.91714 -12.48457 -12.30917 -12.12122 -11.65264 -11.52054 -11.35539 -10.99720 -10.69135 -10.48280 -10.03399 -9.82386 -9.62113 -9.43341 -9.10156 -8.48256 -7.88461 -5.99072 -3.96362 3.34915 3.41757 3.46611 3.48654 4.46316 4.50452 4.65512 4.78915 4.99700 5.30571 5.35042 5.42771 5.50230 5.54430 5.63691 5.76012 5.89496 5.92011 6.06342 6.15463 6.47198 6.63027 6.73516 6.82229 6.94391 7.04154 7.28174 7.39877 7.53156 7.86504 8.60674 9.06465 9.64117 11.14641 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.072327 B = 0.005965 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.039114 B = 4693.277036 C = 4976.164946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.100 4.100 11 C -0.116 4.116 12 C 0.051 3.949 13 N -0.379 5.379 14 C 0.030 3.970 15 C -0.128 4.128 16 C 0.033 3.967 17 N -0.526 5.526 18 H 0.262 0.738 19 H 0.014 0.986 20 H 0.010 0.990 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.517 -8.358 -1.101 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.154 4.154 12 C -0.077 4.077 13 N -0.194 5.194 14 C -0.099 4.099 15 C -0.167 4.167 16 C -0.098 4.098 17 N -0.248 5.248 18 H 0.072 0.928 19 H 0.033 0.967 20 H 0.028 0.972 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 18.190 -8.400 -1.141 20.068 hybrid contribution 0.468 0.958 -0.020 1.066 sum 18.657 -7.442 -1.161 20.121 Atomic orbital electron populations 1.69929 1.06315 1.26786 1.51554 1.25048 0.94730 0.99199 0.94659 0.86756 0.80362 0.83576 0.78458 1.20343 1.21468 1.19008 1.21199 0.89727 0.94398 1.50363 0.91133 1.19566 0.96918 0.92519 0.96100 1.21410 0.91780 0.99762 1.00907 1.21643 0.97601 0.94430 1.01760 1.22398 0.85403 0.99097 1.00845 1.68018 1.09863 1.10508 1.30968 1.23009 0.96152 0.90588 1.00126 1.22501 0.97707 0.96400 1.00079 1.22994 0.90350 0.95182 1.01234 1.66714 1.15806 1.10274 1.31963 0.92834 0.96734 0.97166 0.92983 0.92908 0.92191 0.92105 0.93991 0.90404 0.93023 0.89877 0.90895 0.90988 0.93398 0.89567 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.64 13.96 55.43 0.77 -27.87 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -15.30 9.66 -34.44 -0.33 -15.63 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -2.06 5.15 -26.73 -0.14 -2.19 16 11 C -0.12 -1.97 5.05 -26.73 -0.14 -2.10 16 12 C 0.05 0.75 5.17 -3.82 -0.02 0.73 16 13 N -0.38 -5.11 5.74 -112.18 -0.64 -5.76 16 14 C 0.03 0.34 6.92 -2.53 -0.02 0.32 16 15 C -0.13 -1.18 7.04 -25.27 -0.18 -1.35 16 16 C 0.03 0.33 7.74 -2.01 -0.02 0.31 16 17 N -0.53 -6.75 6.97 -8.53 -0.06 -6.80 16 18 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 19 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 20 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 21 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 22 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.06 1.03 7.10 -51.92 -0.37 0.66 16 25 H 0.04 0.64 7.97 -51.93 -0.41 0.23 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.58 7.67 -51.93 -0.40 0.18 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.35 4.37 8.19 -173.38 -1.42 2.95 16 LS Contribution 266.42 15.07 4.01 4.01 Total: -1.00 -31.62 266.42 -8.39 -40.01 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.76 Total: -2.71 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -1.05 Total: -18.54 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.07 Total: -40.43 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.62 -8.39 -40.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400216444.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.505 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds