Wall clock time and date at job start Mon Mar 30 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46752 * 2 1 4 4 N 1.46898 * 109.47347 * 240.00232 * 2 1 3 5 5 C 1.46904 * 111.00202 * 84.99855 * 4 2 1 6 6 C 1.50697 * 109.46891 * 180.02562 * 5 4 2 7 7 H 1.07991 * 120.00449 * 359.72239 * 6 5 4 8 8 C 1.37885 * 119.99686 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99913 * 359.72095 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 179.72528 * 8 6 5 11 11 H 1.48490 * 109.47339 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47239 * 120.00108 * 10 8 6 13 13 H 1.48504 * 109.46636 * 239.99667 * 10 8 6 14 14 C 1.53000 * 109.47111 * 119.99652 * 2 1 3 15 15 H 1.09009 * 109.87533 * 55.42837 * 14 2 1 16 16 C 1.54313 * 109.89172 * 294.22801 * 14 2 1 17 17 C 1.55143 * 103.01920 * 218.31047 * 16 14 2 18 18 C 1.54907 * 101.65274 * 35.64992 * 17 16 14 19 19 N 1.47439 * 109.88502 * 176.45327 * 14 2 1 20 20 H 1.09002 * 109.46752 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47384 * 299.99840 * 1 2 3 22 22 H 1.09004 * 109.46924 * 60.00092 * 1 2 3 23 23 H 1.00906 * 110.99950 * 321.04631 * 4 2 1 24 24 H 1.08998 * 109.47046 * 59.99771 * 5 4 2 25 25 H 1.09001 * 109.47014 * 299.99971 * 5 4 2 26 26 H 0.97000 * 119.99651 * 180.02562 * 9 8 6 27 27 H 1.09004 * 110.70449 * 336.68824 * 16 14 2 28 28 H 1.08996 * 110.70935 * 99.92417 * 16 14 2 29 29 H 1.09006 * 110.99033 * 277.56314 * 17 16 14 30 30 H 1.08992 * 110.99203 * 153.74228 * 17 16 14 31 31 H 1.09004 * 110.37529 * 204.10172 * 18 17 16 32 32 H 1.09002 * 110.46425 * 81.80896 * 18 17 16 33 33 H 1.00897 * 111.00819 * 356.15614 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0825 0.2227 -2.3469 6 6 2.5875 -0.5217 -3.5560 7 1 2.8410 -1.5686 -3.4786 8 6 2.7316 0.1354 -4.7596 9 7 2.4233 1.4104 -4.8537 10 14 3.3648 -0.7855 -6.2564 11 1 3.6381 -2.1982 -5.8895 12 1 2.3431 -0.7420 -7.3331 13 1 4.6172 -0.1480 -6.7364 14 6 2.0400 -0.7212 1.2493 15 1 1.6151 -1.7239 1.2978 16 6 1.6536 0.0781 2.5115 17 6 2.8996 -0.0822 3.4218 18 6 4.0493 -0.0699 2.3836 19 7 3.5119 -0.8012 1.2164 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.4496 -1.4979 -1.4101 24 1 2.7589 1.0463 -2.1182 25 1 1.0871 0.6164 -2.5526 26 1 2.5244 1.8725 -5.7005 27 1 1.4873 1.1274 2.2673 28 1 0.7719 -0.3528 2.9856 29 1 2.8703 -1.0294 3.9606 30 1 2.9887 0.7558 4.1129 31 1 4.9255 -0.5817 2.7816 32 1 4.3017 0.9537 2.1067 33 1 3.8755 -0.4235 0.3544 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400413980.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:10 Heat of formation + Delta-G solvation = -33.537813 kcal Electronic energy + Delta-G solvation = -12907.803216 eV Core-core repulsion = 10773.573600 eV Total energy + Delta-G solvation = -2134.229615 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.01080 -37.03093 -34.77704 -31.93849 -30.92637 -28.60174 -27.85871 -24.29049 -22.84680 -21.79668 -21.15863 -18.58165 -17.15863 -16.66730 -16.54958 -15.76363 -15.57103 -14.65732 -14.28637 -14.09159 -13.84072 -13.41245 -13.17878 -12.96441 -12.75233 -12.69458 -12.52174 -12.16614 -12.11583 -11.88703 -11.66842 -11.54273 -11.14231 -10.68022 -9.29507 -8.95911 -8.23269 -6.33925 1.40487 1.41348 1.55494 2.39735 3.10249 3.28941 3.71892 3.83587 3.91155 4.03195 4.29008 4.32175 4.43734 4.60287 4.68992 4.79656 4.90749 4.97459 5.03705 5.05976 5.12412 5.19202 5.26396 5.34073 5.46083 5.62499 6.01834 6.20993 6.44484 6.56012 6.74876 6.90929 7.37311 8.88382 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.055893 B = 0.007552 C = 0.007114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.834024 B = 3706.736820 C = 3935.113422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.065 3.935 3 H 0.047 0.953 4 N -0.677 5.677 5 C 0.214 3.786 6 C -0.533 4.533 7 H 0.064 0.936 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.973 3.027 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.279 1.279 14 C 0.096 3.904 15 H 0.075 0.925 16 C -0.134 4.134 17 C -0.120 4.120 18 C 0.035 3.965 19 N -0.688 5.688 20 H 0.066 0.934 21 H 0.079 0.921 22 H 0.032 0.968 23 H 0.335 0.665 24 H -0.006 1.006 25 H -0.039 1.039 26 H 0.264 0.736 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 -2.583 14.011 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.047 4.047 3 H 0.065 0.935 4 N -0.306 5.306 5 C 0.086 3.914 6 C -0.571 4.571 7 H 0.082 0.918 8 C -0.197 4.197 9 N -0.576 5.576 10 Si 0.797 3.203 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.204 1.204 14 C -0.015 4.015 15 H 0.093 0.907 16 C -0.173 4.173 17 C -0.158 4.158 18 C -0.094 4.094 19 N -0.318 5.318 20 H 0.085 0.915 21 H 0.098 0.902 22 H 0.051 0.949 23 H 0.152 0.848 24 H 0.012 0.988 25 H -0.022 1.022 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.966 -3.012 14.338 14.683 hybrid contribution -0.794 1.093 -1.666 2.145 sum -1.760 -1.919 12.672 12.936 Atomic orbital electron populations 1.22352 0.96136 1.02521 1.01775 1.22144 0.93999 0.96618 0.91897 0.93462 1.60535 1.56308 1.09766 1.04028 1.19160 0.92728 0.91407 0.88120 1.21594 1.43492 0.97274 0.94722 0.91822 1.25949 0.95640 0.95768 1.02392 1.70100 1.49867 1.10764 1.26854 0.85282 0.77874 0.78881 0.78248 1.18708 1.20301 1.20441 1.22210 0.88264 0.98438 0.92550 0.90687 1.22870 0.99407 1.00072 0.94958 1.22675 0.93141 1.03028 0.96953 1.22975 0.98774 0.96019 0.91642 1.61957 1.05960 1.57831 1.06081 0.91468 0.90226 0.94891 0.84780 0.98769 1.02159 0.92683 0.91689 0.89137 0.90219 0.89354 0.90202 0.94952 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.12 9.00 71.98 0.65 -4.47 16 2 C 0.06 2.27 1.95 44.92 0.09 2.35 16 3 H 0.05 1.84 7.71 -2.39 -0.02 1.82 16 4 N -0.68 -29.12 5.48 -495.57 -2.72 -31.84 16 5 C 0.21 11.53 5.24 85.56 0.45 11.98 16 6 C -0.53 -30.76 9.32 25.60 0.24 -30.52 16 7 H 0.06 3.60 7.81 -2.92 -0.02 3.58 16 8 C 0.00 0.03 5.46 84.66 0.46 0.49 16 9 N -0.94 -57.13 13.29 21.45 0.28 -56.85 16 10 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 11 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 14 C 0.10 2.82 3.24 45.26 0.15 2.97 16 15 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 16 C -0.13 -3.01 5.53 31.77 0.18 -2.84 16 17 C -0.12 -2.43 7.08 31.98 0.23 -2.21 16 18 C 0.03 0.89 7.57 86.77 0.66 1.55 16 19 N -0.69 -22.09 7.30 -482.35 -3.52 -25.61 16 20 H 0.07 1.86 8.13 -2.39 -0.02 1.84 16 21 H 0.08 1.96 7.43 -2.39 -0.02 1.94 16 22 H 0.03 1.15 7.45 -2.39 -0.02 1.13 16 23 H 0.33 13.99 8.46 -89.69 -0.76 13.23 16 24 H -0.01 -0.34 8.05 -2.39 -0.02 -0.36 16 25 H -0.04 -2.28 7.44 -2.39 -0.02 -2.30 16 26 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 27 H 0.06 1.49 7.79 -2.38 -0.02 1.47 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.34 12.84 7.65 -89.70 -0.69 12.15 16 Total: -1.00 -63.07 266.41 -1.20 -64.27 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -0.36 Total: 23.78 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 3.09 Total: -20.69 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -5.95 Total: -114.29 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -63.07 -1.20 -64.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400413980.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.735 kcal (2) G-P(sol) polarization free energy of solvation -63.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds