Wall clock time and date at job start Mon Mar 30 2020 02:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47445 * 2 1 4 4 N 1.46902 * 109.47262 * 119.99780 * 2 1 3 5 5 C 1.46893 * 111.00118 * 275.00315 * 4 2 1 6 6 C 1.50705 * 109.47193 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99683 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99928 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99771 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 120.00301 * 0.02562 * 8 6 5 11 11 H 1.48507 * 109.47071 * 89.99395 * 10 8 6 12 12 H 1.48492 * 109.47334 * 209.99793 * 10 8 6 13 13 H 1.48504 * 109.47247 * 330.00153 * 10 8 6 14 14 C 1.52999 * 109.47471 * 240.00123 * 2 1 3 15 15 H 1.09006 * 110.28783 * 298.65457 * 14 2 1 16 16 C 1.54256 * 110.32754 * 176.52536 * 14 2 1 17 17 C 1.54374 * 105.06174 * 241.10150 * 16 14 2 18 18 N 1.48552 * 104.59588 * 336.14853 * 17 16 14 19 19 C 1.48563 * 104.22283 * 39.48089 * 18 17 16 20 20 H 1.08998 * 109.47166 * 183.83812 * 1 2 3 21 21 H 1.08996 * 109.47397 * 303.83926 * 1 2 3 22 22 H 1.09000 * 109.47139 * 63.84013 * 1 2 3 23 23 H 1.00901 * 110.99815 * 151.04097 * 4 2 1 24 24 H 1.08998 * 109.47214 * 299.99731 * 5 4 2 25 25 H 1.09001 * 109.47249 * 59.99888 * 5 4 2 26 26 H 0.97002 * 120.00153 * 180.02562 * 9 8 6 27 27 H 1.09002 * 110.32046 * 0.02562 * 16 14 2 28 28 H 1.09002 * 110.32534 * 122.20184 * 16 14 2 29 29 H 1.09001 * 110.40796 * 94.92473 * 17 16 14 30 30 H 1.09005 * 110.41202 * 217.36351 * 17 16 14 31 31 H 1.00907 * 111.00242 * 159.03710 * 18 17 16 32 32 H 1.08999 * 110.41220 * 201.73838 * 19 18 17 33 33 H 1.08999 * 110.40782 * 79.29580 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5873 -0.5218 3.5560 7 1 2.8371 -1.5697 3.4796 8 6 2.7315 0.1353 4.7596 9 7 3.1726 -0.5142 5.8147 10 14 2.3002 1.9480 4.8916 11 1 0.8708 2.0906 5.2683 12 1 3.1513 2.5851 5.9283 13 1 2.5354 2.6094 3.5829 14 6 2.0401 -0.7212 -1.2492 15 1 1.7038 -1.7581 -1.2508 16 6 3.5800 -0.6572 -1.3137 17 6 3.8956 0.1012 -2.6207 18 7 2.6940 -0.1012 -3.4705 19 6 1.5548 0.0040 -2.5227 20 1 -0.3633 -1.0253 0.0688 21 1 -0.3634 0.5722 0.8535 22 1 -0.3633 0.4531 -0.9224 23 1 2.9173 -1.1205 1.0287 24 1 2.7588 1.0462 2.1182 25 1 1.0870 0.6163 2.5525 26 1 3.2736 -0.0521 6.6615 27 1 3.9725 -0.1123 -0.4551 28 1 3.9996 -1.6626 -1.3486 29 1 4.0437 1.1620 -2.4184 30 1 4.7774 -0.3216 -3.1022 31 1 2.6345 0.6066 -4.1872 32 1 0.6740 -0.4921 -2.9304 33 1 1.3367 1.0495 -2.3051 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400432011.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:02 Heat of formation + Delta-G solvation = -6.388934 kcal Electronic energy + Delta-G solvation = -12931.488904 eV Core-core repulsion = 10798.436553 eV Total energy + Delta-G solvation = -2133.052352 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.00741 -35.66950 -32.76053 -30.79718 -29.69794 -27.61696 -26.54912 -22.50128 -21.31178 -20.74737 -19.43038 -16.98773 -16.39388 -15.81564 -14.66283 -14.50693 -13.70724 -13.51668 -13.15959 -12.52680 -12.44049 -12.16670 -12.00860 -11.76723 -11.68487 -11.17634 -11.03215 -10.71910 -10.54336 -10.37355 -10.02339 -9.76149 -9.26287 -8.69221 -8.59243 -7.46174 -6.06290 -4.04004 3.27581 3.34647 3.36871 4.22849 4.41142 4.62526 4.82548 5.02310 5.16612 5.25985 5.28418 5.49571 5.64449 5.69840 5.73423 5.79290 5.94049 6.02786 6.12607 6.26967 6.29338 6.46874 6.63538 6.72166 6.81800 7.02407 7.20290 7.62336 7.92361 8.36385 8.65671 9.02132 9.55860 11.07068 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051501 B = 0.008033 C = 0.007779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.552714 B = 3484.924975 C = 3598.777228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.087 3.913 3 H 0.031 0.969 4 N -0.676 5.676 5 C 0.165 3.835 6 C -0.515 4.515 7 H 0.079 0.921 8 C 0.068 3.932 9 N -0.900 5.900 10 Si 0.877 3.123 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.269 1.269 14 C -0.091 4.091 15 H 0.086 0.914 16 C -0.126 4.126 17 C 0.035 3.965 18 N -0.669 5.669 19 C 0.042 3.958 20 H 0.061 0.939 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.336 0.664 24 H -0.018 1.018 25 H 0.022 0.978 26 H 0.264 0.736 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.332 0.668 32 H 0.080 0.920 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.665 3.474 -15.819 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 H 0.049 0.951 4 N -0.308 5.308 5 C 0.037 3.963 6 C -0.554 4.554 7 H 0.097 0.903 8 C -0.133 4.133 9 N -0.539 5.539 10 Si 0.704 3.296 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.194 1.194 14 C -0.110 4.110 15 H 0.105 0.895 16 C -0.164 4.164 17 C -0.094 4.094 18 N -0.297 5.297 19 C -0.087 4.087 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.155 0.845 24 H -0.001 1.001 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.147 0.853 32 H 0.098 0.902 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.207 2.504 -15.506 15.861 hybrid contribution 0.529 2.558 0.278 2.627 sum -1.678 5.062 -15.229 16.135 Atomic orbital electron populations 1.21797 0.95226 1.02281 1.00290 1.21575 0.95721 0.95227 0.89902 0.95112 1.60534 1.33190 1.33866 1.03183 1.20025 0.95495 0.91203 0.89576 1.21078 1.43284 0.98664 0.92336 0.90287 1.24907 0.94820 0.97946 0.95670 1.69902 1.46701 1.36488 1.00840 0.86833 0.78753 0.85994 0.77989 1.20134 1.21188 1.19362 1.22061 0.94714 1.00814 0.93438 0.89538 1.22417 0.96000 1.01204 0.96818 1.22914 0.94195 0.98350 0.93933 1.63720 1.02371 1.51624 1.11946 1.22979 0.94483 0.98859 0.92422 0.91990 0.92844 0.93502 0.84538 1.00083 0.96021 0.92659 0.91013 0.90763 0.94420 0.90357 0.85334 0.90192 0.94105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.24 37.16 0.34 -1.81 16 2 C 0.09 1.46 1.88 -67.71 -0.13 1.33 16 3 H 0.03 0.55 7.80 -51.93 -0.40 0.14 16 4 N -0.68 -14.10 6.28 -107.99 -0.68 -14.78 16 5 C 0.16 4.06 4.31 -4.98 -0.02 4.04 16 6 C -0.52 -14.93 9.87 -34.44 -0.34 -15.27 16 7 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 10 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 14 C -0.09 -1.28 2.76 -89.24 -0.25 -1.53 16 15 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.13 -1.71 5.82 -25.35 -0.15 -1.86 16 17 C 0.04 0.41 7.47 -2.19 -0.02 0.40 16 18 N -0.67 -7.68 7.62 -109.67 -0.84 -8.52 16 19 C 0.04 0.51 5.87 -2.18 -0.01 0.50 16 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 21 H 0.05 0.90 7.55 -51.93 -0.39 0.51 16 22 H 0.05 0.60 7.04 -51.93 -0.37 0.23 16 23 H 0.34 6.82 6.98 -39.29 -0.27 6.54 16 24 H -0.02 -0.46 7.11 -51.93 -0.37 -0.83 16 25 H 0.02 0.54 6.94 -51.93 -0.36 0.18 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.07 1.07 7.11 -51.93 -0.37 0.70 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.33 3.13 8.92 -39.29 -0.35 2.78 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.04 0.48 7.69 -51.93 -0.40 0.08 16 LS Contribution 261.13 15.07 3.94 3.94 Total: -1.00 -30.59 261.13 -7.55 -38.15 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.41 Total: 3.47 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.67 Total: -12.29 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.74 Total: -50.42 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.59 -7.55 -38.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400432011.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.757 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds