Wall clock time and date at job start Mon Mar 30 2020 02:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47445 * 2 1 4 4 N 1.46902 * 109.47262 * 119.99780 * 2 1 3 5 5 C 1.46893 * 111.00118 * 275.00315 * 4 2 1 6 6 C 1.50705 * 109.47193 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99683 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99928 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99771 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 120.00301 * 0.02562 * 8 6 5 11 11 H 1.48507 * 109.47071 * 89.99395 * 10 8 6 12 12 H 1.48492 * 109.47334 * 209.99793 * 10 8 6 13 13 H 1.48504 * 109.47247 * 330.00153 * 10 8 6 14 14 C 1.52999 * 109.47471 * 240.00123 * 2 1 3 15 15 H 1.09006 * 110.28783 * 298.65457 * 14 2 1 16 16 C 1.54256 * 110.32754 * 176.52536 * 14 2 1 17 17 C 1.54374 * 105.06174 * 241.10150 * 16 14 2 18 18 N 1.48552 * 104.59588 * 336.14853 * 17 16 14 19 19 C 1.48563 * 104.22283 * 39.48089 * 18 17 16 20 20 H 1.08998 * 109.47166 * 183.83812 * 1 2 3 21 21 H 1.08996 * 109.47397 * 303.83926 * 1 2 3 22 22 H 1.09000 * 109.47139 * 63.84013 * 1 2 3 23 23 H 1.00901 * 110.99815 * 151.04097 * 4 2 1 24 24 H 1.08998 * 109.47214 * 299.99731 * 5 4 2 25 25 H 1.09001 * 109.47249 * 59.99888 * 5 4 2 26 26 H 0.97002 * 120.00153 * 180.02562 * 9 8 6 27 27 H 1.09002 * 110.32046 * 0.02562 * 16 14 2 28 28 H 1.09002 * 110.32534 * 122.20184 * 16 14 2 29 29 H 1.09001 * 110.40796 * 94.92473 * 17 16 14 30 30 H 1.09005 * 110.41202 * 217.36351 * 17 16 14 31 31 H 1.00907 * 111.00242 * 159.03710 * 18 17 16 32 32 H 1.08999 * 110.41220 * 201.73838 * 19 18 17 33 33 H 1.08999 * 110.40782 * 79.29580 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5873 -0.5218 3.5560 7 1 2.8371 -1.5697 3.4796 8 6 2.7315 0.1353 4.7596 9 7 3.1726 -0.5142 5.8147 10 14 2.3002 1.9480 4.8916 11 1 0.8708 2.0906 5.2683 12 1 3.1513 2.5851 5.9283 13 1 2.5354 2.6094 3.5829 14 6 2.0401 -0.7212 -1.2492 15 1 1.7038 -1.7581 -1.2508 16 6 3.5800 -0.6572 -1.3137 17 6 3.8956 0.1012 -2.6207 18 7 2.6940 -0.1012 -3.4705 19 6 1.5548 0.0040 -2.5227 20 1 -0.3633 -1.0253 0.0688 21 1 -0.3634 0.5722 0.8535 22 1 -0.3633 0.4531 -0.9224 23 1 2.9173 -1.1205 1.0287 24 1 2.7588 1.0462 2.1182 25 1 1.0870 0.6163 2.5525 26 1 3.2736 -0.0521 6.6615 27 1 3.9725 -0.1123 -0.4551 28 1 3.9996 -1.6626 -1.3486 29 1 4.0437 1.1620 -2.4184 30 1 4.7774 -0.3216 -3.1022 31 1 2.6345 0.6066 -4.1872 32 1 0.6740 -0.4921 -2.9304 33 1 1.3367 1.0495 -2.3051 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400432011.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:02 Heat of formation + Delta-G solvation = -30.443461 kcal Electronic energy + Delta-G solvation = -12932.531987 eV Core-core repulsion = 10798.436553 eV Total energy + Delta-G solvation = -2134.095434 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.13782 -37.13381 -34.81724 -32.45828 -30.73544 -28.90849 -28.28405 -24.10263 -22.44244 -22.30695 -20.66763 -18.99075 -17.60214 -17.09327 -16.45159 -15.87959 -15.42813 -14.75997 -14.53208 -14.44654 -13.82263 -13.53271 -13.19142 -13.09493 -13.02283 -12.69958 -12.49441 -12.16930 -12.02343 -11.75130 -11.69672 -11.42532 -11.21652 -10.83150 -9.57746 -9.15383 -8.32697 -6.37228 1.31886 1.33230 1.44224 2.31091 3.01016 3.27677 3.37619 3.75923 3.92320 3.93174 4.24638 4.41493 4.44407 4.54194 4.64964 4.75806 4.76754 4.87987 4.93185 4.98336 5.03775 5.13750 5.16872 5.27000 5.37843 5.55151 5.73888 5.97365 6.42480 6.55627 6.65087 6.75671 7.27888 8.84131 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051501 B = 0.008033 C = 0.007779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.552714 B = 3484.924975 C = 3598.777228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 H 0.027 0.973 4 N -0.685 5.685 5 C 0.178 3.822 6 C -0.529 4.529 7 H 0.037 0.963 8 C 0.008 3.992 9 N -0.946 5.946 10 Si 0.950 3.050 11 H -0.265 1.265 12 H -0.278 1.278 13 H -0.253 1.253 14 C -0.087 4.087 15 H 0.079 0.921 16 C -0.130 4.130 17 C 0.040 3.960 18 N -0.671 5.671 19 C 0.048 3.952 20 H 0.057 0.943 21 H 0.037 0.963 22 H 0.079 0.921 23 H 0.336 0.664 24 H -0.018 1.018 25 H 0.023 0.977 26 H 0.268 0.732 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.347 0.653 32 H 0.092 0.908 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 5.202 -17.650 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.024 4.024 3 H 0.045 0.955 4 N -0.317 5.317 5 C 0.049 3.951 6 C -0.568 4.568 7 H 0.055 0.945 8 C -0.189 4.189 9 N -0.587 5.587 10 Si 0.774 3.226 11 H -0.190 1.190 12 H -0.204 1.204 13 H -0.177 1.177 14 C -0.106 4.106 15 H 0.098 0.902 16 C -0.168 4.168 17 C -0.090 4.090 18 N -0.301 5.301 19 C -0.082 4.082 20 H 0.076 0.924 21 H 0.056 0.944 22 H 0.098 0.902 23 H 0.154 0.846 24 H 0.000 1.000 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.163 0.837 32 H 0.110 0.890 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.936 4.228 -17.373 18.120 hybrid contribution 0.781 1.906 0.827 2.220 sum -2.154 6.134 -16.546 17.777 Atomic orbital electron populations 1.21792 0.94032 1.02116 1.01371 1.21684 0.96565 0.94862 0.89265 0.95501 1.60466 1.33334 1.33772 1.04126 1.19742 0.94913 0.91089 0.89314 1.21351 1.43545 0.97295 0.94559 0.94490 1.25880 0.94498 1.03485 0.95059 1.70053 1.48017 1.38921 1.01669 0.85669 0.78942 0.79268 0.78768 1.18984 1.20377 1.17701 1.21981 0.95051 1.00337 0.93276 0.90239 1.22414 0.95670 1.01327 0.97399 1.22885 0.94791 0.98362 0.92923 1.63700 1.01897 1.52491 1.12021 1.22928 0.95003 0.98963 0.91268 0.92419 0.94358 0.90183 0.84573 1.00038 0.95935 0.92290 0.92759 0.90817 0.93930 0.89215 0.83668 0.88966 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.24 71.98 0.67 -3.28 16 2 C 0.09 2.79 1.88 44.91 0.08 2.87 16 3 H 0.03 0.91 7.80 -2.38 -0.02 0.89 16 4 N -0.69 -28.61 6.28 -495.58 -3.11 -31.72 16 5 C 0.18 8.74 4.31 85.56 0.37 9.11 16 6 C -0.53 -31.40 9.87 25.60 0.25 -31.15 16 7 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 8 C 0.01 0.50 5.47 84.65 0.46 0.96 16 9 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 10 Si 0.95 44.69 27.47 68.60 1.88 46.57 16 11 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 14 C -0.09 -2.31 2.76 -9.90 -0.03 -2.34 16 15 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 16 C -0.13 -3.38 5.82 31.49 0.18 -3.19 16 17 C 0.04 0.84 7.47 86.45 0.65 1.48 16 18 N -0.67 -13.42 7.62 -500.88 -3.82 -17.23 16 19 C 0.05 1.01 5.87 86.45 0.51 1.52 16 20 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.04 1.22 7.55 -2.39 -0.02 1.20 16 22 H 0.08 1.79 7.04 -2.39 -0.02 1.77 16 23 H 0.34 13.89 6.98 -89.69 -0.63 13.26 16 24 H -0.02 -0.87 7.11 -2.39 -0.02 -0.89 16 25 H 0.02 1.11 6.94 -2.39 -0.02 1.09 16 26 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 27 H 0.05 1.59 7.11 -2.39 -0.02 1.58 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 1.69 8.14 -2.38 -0.02 1.68 16 31 H 0.35 5.36 8.92 -89.69 -0.80 4.56 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 0.95 7.69 -2.39 -0.02 0.93 16 Total: -1.00 -65.93 261.13 -2.00 -67.93 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.39 Total: 18.03 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 3.14 Total: -24.02 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -6.63 Total: -108.51 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -65.93 -2.00 -67.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400432011.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.490 kcal (2) G-P(sol) polarization free energy of solvation -65.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds