Wall clock time and date at job start Mon Mar 30 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.78418 * 2 1 4 4 C 1.52781 * 109.55866 * 239.77821 * 2 1 3 5 5 N 1.46900 * 109.42648 * 186.60555 * 4 2 1 6 6 C 1.46904 * 111.26430 * 62.96282 * 5 4 2 7 7 H 1.08997 * 109.51338 * 56.87045 * 6 5 4 8 8 C 1.52997 * 109.48798 * 176.93547 * 6 5 4 9 9 C 1.53238 * 109.34045 * 296.89476 * 6 5 4 10 10 H 1.08997 * 109.62567 * 294.12173 * 9 6 5 11 11 C 1.52994 * 109.62894 * 173.54053 * 9 6 5 12 12 N 1.47079 * 109.63176 * 120.48811 * 2 1 3 13 13 C 1.36933 * 120.87789 * 350.89551 * 12 2 1 14 14 H 1.07996 * 120.00286 * 53.68001 * 13 12 2 15 15 C 1.38807 * 119.99932 * 233.67110 * 13 12 2 16 16 N 1.31616 * 120.00345 * 200.97812 * 15 13 12 17 17 Si 1.86800 * 119.99821 * 21.25266 * 15 13 12 18 18 H 1.48502 * 109.47153 * 264.69518 * 17 15 13 19 19 H 1.48498 * 109.47403 * 24.69637 * 17 15 13 20 20 H 1.48498 * 109.47275 * 144.69644 * 17 15 13 21 21 H 1.08993 * 109.46860 * 303.57976 * 1 2 3 22 22 H 1.09000 * 109.47009 * 63.58027 * 1 2 3 23 23 H 1.09001 * 109.46434 * 183.57982 * 1 2 3 24 24 H 1.09009 * 109.57079 * 66.54939 * 4 2 1 25 25 H 1.09003 * 109.33675 * 306.52306 * 4 2 1 26 26 H 1.00903 * 110.99818 * 187.10950 * 5 4 2 27 27 H 1.09005 * 109.46780 * 179.86757 * 8 6 5 28 28 H 1.08997 * 109.47382 * 299.86320 * 8 6 5 29 29 H 1.08996 * 109.47447 * 59.86647 * 8 6 5 30 30 H 1.09001 * 109.47417 * 294.63589 * 11 9 6 31 31 H 1.09010 * 109.47163 * 54.63278 * 11 9 6 32 32 H 1.09000 * 109.47277 * 174.63130 * 11 9 6 33 33 H 0.97004 * 120.00641 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0415 -0.7246 -1.2440 5 7 3.5018 -0.8622 -1.1635 6 6 3.8966 -1.6900 -0.0159 7 1 3.4151 -2.6652 -0.0876 8 6 5.4160 -1.8695 -0.0146 9 6 3.4621 -0.9994 1.2813 10 1 4.0204 -0.0717 1.4068 11 6 3.7242 -1.9265 2.4698 12 7 2.0242 -0.7028 1.1938 13 6 1.1673 -1.0762 2.1945 14 1 0.2929 -1.6669 1.9643 15 6 1.4226 -0.6957 3.5047 16 7 0.8773 -1.3604 4.5012 17 14 2.5340 0.7647 3.8535 18 1 3.9170 0.2854 4.1041 19 1 2.5314 1.6793 2.6836 20 1 2.0371 1.4902 5.0500 21 1 -0.3633 0.5684 0.8561 22 1 -0.3633 0.4573 -0.9203 23 1 -0.3632 -1.0257 0.0642 24 1 1.7786 -0.1525 -2.1338 25 1 1.5855 -1.7132 -1.2989 26 1 3.8780 -1.2330 -2.0232 27 1 5.7087 -2.4818 0.8384 28 1 5.7246 -2.3607 -0.9373 29 1 5.8971 -0.8940 0.0562 30 1 3.0857 -2.8064 2.3920 31 1 4.7698 -2.2349 2.4664 32 1 3.5041 -1.3987 3.3977 33 1 1.0554 -1.0943 5.4169 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401363741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:39 Heat of formation + Delta-G solvation = 23.858571 kcal Electronic energy + Delta-G solvation = -13939.155230 eV Core-core repulsion = 11807.414508 eV Total energy + Delta-G solvation = -2131.740721 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.49058 -34.17842 -33.45833 -31.32876 -28.74029 -27.48644 -25.00182 -24.12290 -21.51611 -19.97865 -19.14140 -16.45558 -15.50110 -14.88788 -14.66417 -14.45999 -13.39231 -13.29064 -12.67664 -12.37259 -12.13944 -11.95560 -11.78259 -11.22410 -11.00155 -10.91738 -10.70546 -10.40343 -10.06625 -10.03526 -9.89928 -9.65903 -9.35966 -8.38014 -7.95847 -6.37748 -5.98304 -3.55013 3.37465 3.49719 3.61962 4.56216 4.66070 4.96374 5.27365 5.55351 5.68512 5.82739 5.92305 6.00218 6.09832 6.16978 6.23389 6.39422 6.40941 6.44687 6.51128 6.52214 6.62783 6.81874 7.05249 7.11798 7.22422 7.40695 7.62508 7.88987 8.15806 8.57290 9.09238 9.73541 10.32446 11.14599 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032984 B = 0.018094 C = 0.014039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.683721 B = 1547.093009 C = 1993.942329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.166 3.834 3 H 0.031 0.969 4 C 0.050 3.950 5 N -0.686 5.686 6 C 0.072 3.928 7 H 0.036 0.964 8 C -0.145 4.145 9 C 0.176 3.824 10 H 0.029 0.971 11 C -0.144 4.144 12 N -0.600 5.600 13 C -0.269 4.269 14 H 0.069 0.931 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.871 3.129 18 H -0.281 1.281 19 H -0.268 1.268 20 H -0.301 1.301 21 H 0.063 0.937 22 H 0.037 0.963 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.026 0.974 26 H 0.326 0.674 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.158 0.301 -8.702 10.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.061 3.939 3 H 0.049 0.951 4 C -0.081 4.081 5 N -0.316 5.316 6 C -0.040 4.040 7 H 0.054 0.946 8 C -0.203 4.203 9 C 0.070 3.930 10 H 0.046 0.954 11 C -0.201 4.201 12 N -0.326 5.326 13 C -0.398 4.398 14 H 0.087 0.913 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.700 3.300 18 H -0.208 1.208 19 H -0.193 1.193 20 H -0.229 1.229 21 H 0.082 0.918 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.044 0.956 26 H 0.142 0.858 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.176 0.871 -8.160 9.702 hybrid contribution 0.392 -0.076 -0.030 0.400 sum 5.568 0.795 -8.189 9.935 Atomic orbital electron populations 1.21698 0.95307 1.01952 0.99875 1.20569 0.93033 0.93937 0.86408 0.95104 1.22393 0.87348 0.99064 0.99288 1.60326 1.11392 1.54509 1.05410 1.22057 0.94295 0.94648 0.92952 0.94575 1.21872 0.95743 1.01751 1.00931 1.20695 0.85928 0.94826 0.91532 0.95379 1.22071 0.98329 1.00790 0.98953 1.44475 1.02801 1.65821 1.19478 1.18413 1.07032 1.28990 0.85326 0.91332 1.25854 0.96108 0.96493 0.96107 1.69886 1.45707 1.39026 0.98943 0.87115 0.80457 0.85234 0.77215 1.20778 1.19252 1.22912 0.91828 0.94409 0.92636 0.91990 0.95586 0.85750 0.91953 0.93626 0.92265 0.91592 0.94531 0.91401 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.19 37.16 0.30 -2.25 16 2 C 0.17 3.54 3.64 -67.73 -0.25 3.30 16 3 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.05 0.90 5.96 -3.94 -0.02 0.87 16 5 N -0.69 -11.98 6.49 -106.71 -0.69 -12.67 16 6 C 0.07 1.33 2.64 -67.59 -0.18 1.16 16 7 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 8 C -0.14 -2.21 9.21 37.16 0.34 -1.87 16 9 C 0.18 3.94 1.91 -67.49 -0.13 3.81 16 10 H 0.03 0.67 7.41 -51.93 -0.38 0.29 16 11 C -0.14 -3.24 7.75 37.15 0.29 -2.95 16 12 N -0.60 -14.59 2.25 -157.28 -0.35 -14.94 16 13 C -0.27 -7.39 7.27 -15.06 -0.11 -7.50 16 14 H 0.07 2.06 7.24 -52.49 -0.38 1.68 16 15 C 0.06 1.60 3.95 -17.43 -0.07 1.53 16 16 N -0.90 -26.71 13.97 55.49 0.78 -25.93 16 17 Si 0.87 22.57 24.69 -169.99 -4.20 18.37 16 18 H -0.28 -7.06 6.49 56.52 0.37 -6.69 16 19 H -0.27 -7.06 7.11 56.52 0.40 -6.65 16 20 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 21 H 0.06 1.35 7.83 -51.93 -0.41 0.94 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.05 1.13 7.39 -51.93 -0.38 0.75 16 24 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.33 4.76 8.77 -39.29 -0.34 4.41 16 27 H 0.06 0.92 6.53 -51.93 -0.34 0.58 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.57 7.76 -51.93 -0.40 1.17 16 31 H 0.04 0.69 6.42 -51.92 -0.33 0.36 16 32 H 0.07 1.70 3.36 -51.93 -0.17 1.52 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 246.64 15.07 3.72 3.72 Total: -1.00 -29.51 246.64 -5.85 -35.36 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.28 Total: 0.01 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 0.18 Total: -3.90 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.27 Total: -53.55 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.20 Total: 18.37 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.51 -5.85 -35.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401363741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.218 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds