Wall clock time and date at job start Mon Mar 30 2020 02:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.50714 * 2 1 4 4 C 1.53044 * 109.50147 * 120.07427 * 2 1 3 5 5 N 1.46847 * 109.52394 * 179.11978 * 4 2 1 6 6 C 1.46851 * 111.19497 * 298.25470 * 5 4 2 7 7 C 1.53042 * 109.52030 * 61.74773 * 6 5 4 8 8 H 1.08990 * 109.50581 * 60.79911 * 7 6 5 9 9 N 1.46906 * 109.50183 * 180.87790 * 7 6 5 10 10 C 1.46903 * 110.99770 * 274.92034 * 9 7 6 11 11 C 1.50697 * 109.46926 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00219 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99879 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00034 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00078 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47023 * 59.99174 * 15 13 11 17 17 H 1.48501 * 109.47089 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46719 * 299.99649 * 15 13 11 19 19 C 1.53119 * 109.30708 * 300.83364 * 7 6 5 20 20 H 1.09000 * 109.47327 * 299.92957 * 1 2 3 21 21 H 1.08999 * 109.46906 * 59.92534 * 1 2 3 22 22 H 1.08999 * 109.47673 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.45904 * 59.10284 * 4 2 1 24 24 H 1.09001 * 109.46059 * 299.13349 * 4 2 1 25 25 H 1.00898 * 111.00060 * 174.16270 * 5 4 2 26 26 H 1.09000 * 109.46566 * 301.72908 * 6 5 4 27 27 H 1.09002 * 109.45113 * 181.75284 * 6 5 4 28 28 H 1.00899 * 110.99829 * 38.87183 * 9 7 6 29 29 H 1.09005 * 109.46479 * 299.99747 * 10 9 7 30 30 H 1.08996 * 109.47267 * 59.99984 * 10 9 7 31 31 H 0.97000 * 120.00067 * 180.02562 * 14 13 11 32 32 H 1.08998 * 109.52147 * 177.54254 * 19 7 6 33 33 H 1.09001 * 109.52632 * 297.72938 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7229 1.2484 5 7 3.5092 -0.7417 1.2383 6 6 4.0228 -1.4732 0.0732 7 6 3.5711 -0.7725 -1.2103 8 1 3.9684 0.2422 -1.2301 9 7 4.0675 -1.5164 -2.3758 10 6 5.4383 -1.1110 -2.7143 11 6 5.9121 -1.8930 -3.9121 12 1 5.2603 -2.6189 -4.3755 13 6 7.1781 -1.6825 -4.4160 14 7 7.9720 -0.7990 -3.8515 15 14 7.7658 -2.6524 -5.9004 16 1 6.8708 -2.3821 -7.0542 17 1 9.1515 -2.2425 -6.2426 18 1 7.7419 -4.1032 -5.5848 19 6 2.0412 -0.7236 -1.2488 20 1 -0.3634 0.5127 0.8906 21 1 -0.3633 0.5150 -0.8893 22 1 -0.3634 -1.0276 -0.0005 23 1 1.6646 -1.7459 1.2552 24 1 1.6904 -0.2013 2.1391 25 1 3.8718 -1.1285 2.0967 26 1 3.6373 -2.4926 0.0854 27 1 5.1119 -1.4962 0.1103 28 1 4.0130 -2.5117 -2.2196 29 1 5.4554 -0.0460 -2.9461 30 1 6.0954 -1.3091 -1.8675 31 1 8.8625 -0.6506 -4.2062 32 1 1.7163 -0.1868 -2.1401 33 1 1.6446 -1.7387 -1.2691 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401801256.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:17 Heat of formation + Delta-G solvation = -17.368672 kcal Electronic energy + Delta-G solvation = -12843.865004 eV Core-core repulsion = 10710.336536 eV Total energy + Delta-G solvation = -2133.528469 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.77894 -34.89559 -32.99457 -32.44514 -29.28945 -26.37285 -25.77789 -23.22349 -21.94941 -20.52044 -19.44289 -16.56001 -15.93537 -14.99472 -14.62637 -14.10375 -13.97598 -13.84883 -13.42814 -12.69978 -12.35020 -12.19001 -11.89263 -11.73739 -11.26492 -10.89337 -10.74736 -10.70714 -10.39533 -10.25423 -10.17773 -9.73678 -9.13055 -8.47542 -8.29819 -7.26318 -6.00596 -4.02839 3.34940 3.38748 3.41931 4.32589 4.46077 4.86811 5.03952 5.18628 5.34935 5.41296 5.50171 5.54942 5.62819 5.73571 5.81089 5.89506 5.98351 6.12956 6.20671 6.33801 6.35037 6.67969 6.73780 7.11848 7.33247 7.47095 7.51502 7.81454 8.16362 8.42633 8.64815 9.06353 9.61915 11.10343 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068909 B = 0.006961 C = 0.006621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.236395 B = 4021.522191 C = 4228.127012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.076 0.924 4 C 0.064 3.936 5 N -0.688 5.688 6 C 0.031 3.969 7 C 0.090 3.910 8 H 0.078 0.922 9 N -0.683 5.683 10 C 0.194 3.806 11 C -0.516 4.516 12 H 0.061 0.939 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.101 4.101 20 H 0.051 0.949 21 H 0.057 0.943 22 H 0.051 0.949 23 H 0.025 0.975 24 H 0.068 0.932 25 H 0.337 0.663 26 H 0.025 0.975 27 H 0.075 0.925 28 H 0.326 0.674 29 H 0.028 0.972 30 H -0.013 1.013 31 H 0.262 0.738 32 H 0.068 0.932 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.216 -0.348 9.096 14.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.095 0.905 4 C -0.065 4.065 5 N -0.319 5.319 6 C -0.100 4.100 7 C -0.022 4.022 8 H 0.096 0.904 9 N -0.312 5.312 10 C 0.068 3.932 11 C -0.555 4.555 12 H 0.079 0.921 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.727 3.273 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.139 4.139 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.154 0.846 26 H 0.043 0.957 27 H 0.093 0.907 28 H 0.143 0.857 29 H 0.046 0.954 30 H 0.005 0.995 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.247 0.775 8.292 13.995 hybrid contribution 0.824 -1.849 0.236 2.038 sum -10.423 -1.074 8.528 13.510 Atomic orbital electron populations 1.21773 0.95317 1.01519 1.01519 1.21178 0.94707 1.00494 0.94763 0.90535 1.21957 0.87995 0.98290 0.98259 1.60253 1.07748 1.58613 1.05248 1.22800 1.00360 0.94781 0.92050 1.21550 0.94255 0.98782 0.87606 0.90408 1.60814 1.27421 1.08759 1.34186 1.19581 0.81865 0.96842 0.94923 1.21168 0.98768 1.22161 1.13369 0.92086 1.24988 0.96660 0.95520 0.97376 1.69956 1.08543 1.34108 1.41084 0.86548 0.77611 0.80163 0.82983 1.20162 1.21334 1.20312 1.21624 0.95615 0.99904 0.96790 0.92994 0.92408 0.92987 0.95658 0.91386 0.84626 0.95664 0.90687 0.85696 0.95401 0.99496 0.92862 0.91364 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.20 37.15 0.34 -1.17 16 2 C -0.09 -1.20 2.88 -90.54 -0.26 -1.46 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.06 0.80 5.83 -3.83 -0.02 0.78 16 5 N -0.69 -9.81 6.85 -113.81 -0.78 -10.59 16 6 C 0.03 0.52 5.80 -3.83 -0.02 0.50 16 7 C 0.09 1.66 2.63 -67.63 -0.18 1.48 16 8 H 0.08 1.60 7.80 -51.93 -0.41 1.20 16 9 N -0.68 -14.98 6.24 -107.90 -0.67 -15.65 16 10 C 0.19 5.19 5.24 -4.98 -0.03 5.17 16 11 C -0.52 -14.86 9.32 -34.44 -0.32 -15.18 16 12 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 15 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.10 -1.57 4.90 -26.61 -0.13 -1.70 16 20 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.34 4.10 8.90 -39.29 -0.35 3.75 16 26 H 0.03 0.41 8.12 -51.93 -0.42 -0.02 16 27 H 0.07 1.38 7.48 -51.93 -0.39 1.00 16 28 H 0.33 6.86 8.46 -39.29 -0.33 6.53 16 29 H 0.03 0.81 8.06 -51.93 -0.42 0.39 16 30 H -0.01 -0.36 7.46 -51.93 -0.39 -0.75 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 266.02 15.07 4.01 4.01 Total: -1.00 -29.93 266.02 -8.07 -38.01 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.63 Total: 3.83 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -0.72 Total: -10.06 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.72 Total: -52.69 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.93 -8.07 -38.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401801256.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.638 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds