Wall clock time and date at job start Mon Mar 30 2020 02:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.50714 * 2 1 4 4 C 1.53044 * 109.50147 * 120.07427 * 2 1 3 5 5 N 1.46847 * 109.52394 * 179.11978 * 4 2 1 6 6 C 1.46851 * 111.19497 * 298.25470 * 5 4 2 7 7 C 1.53042 * 109.52030 * 61.74773 * 6 5 4 8 8 H 1.08990 * 109.50581 * 60.79911 * 7 6 5 9 9 N 1.46906 * 109.50183 * 180.87790 * 7 6 5 10 10 C 1.46903 * 110.99770 * 274.92034 * 9 7 6 11 11 C 1.50697 * 109.46926 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00219 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99879 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00034 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00078 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47023 * 59.99174 * 15 13 11 17 17 H 1.48501 * 109.47089 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46719 * 299.99649 * 15 13 11 19 19 C 1.53119 * 109.30708 * 300.83364 * 7 6 5 20 20 H 1.09000 * 109.47327 * 299.92957 * 1 2 3 21 21 H 1.08999 * 109.46906 * 59.92534 * 1 2 3 22 22 H 1.08999 * 109.47673 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.45904 * 59.10284 * 4 2 1 24 24 H 1.09001 * 109.46059 * 299.13349 * 4 2 1 25 25 H 1.00898 * 111.00060 * 174.16270 * 5 4 2 26 26 H 1.09000 * 109.46566 * 301.72908 * 6 5 4 27 27 H 1.09002 * 109.45113 * 181.75284 * 6 5 4 28 28 H 1.00899 * 110.99829 * 38.87183 * 9 7 6 29 29 H 1.09005 * 109.46479 * 299.99747 * 10 9 7 30 30 H 1.08996 * 109.47267 * 59.99984 * 10 9 7 31 31 H 0.97000 * 120.00067 * 180.02562 * 14 13 11 32 32 H 1.08998 * 109.52147 * 177.54254 * 19 7 6 33 33 H 1.09001 * 109.52632 * 297.72938 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7229 1.2484 5 7 3.5092 -0.7417 1.2383 6 6 4.0228 -1.4732 0.0732 7 6 3.5711 -0.7725 -1.2103 8 1 3.9684 0.2422 -1.2301 9 7 4.0675 -1.5164 -2.3758 10 6 5.4383 -1.1110 -2.7143 11 6 5.9121 -1.8930 -3.9121 12 1 5.2603 -2.6189 -4.3755 13 6 7.1781 -1.6825 -4.4160 14 7 7.9720 -0.7990 -3.8515 15 14 7.7658 -2.6524 -5.9004 16 1 6.8708 -2.3821 -7.0542 17 1 9.1515 -2.2425 -6.2426 18 1 7.7419 -4.1032 -5.5848 19 6 2.0412 -0.7236 -1.2488 20 1 -0.3634 0.5127 0.8906 21 1 -0.3633 0.5150 -0.8893 22 1 -0.3634 -1.0276 -0.0005 23 1 1.6646 -1.7459 1.2552 24 1 1.6904 -0.2013 2.1391 25 1 3.8718 -1.1285 2.0967 26 1 3.6373 -2.4926 0.0854 27 1 5.1119 -1.4962 0.1103 28 1 4.0130 -2.5117 -2.2196 29 1 5.4554 -0.0460 -2.9461 30 1 6.0954 -1.3091 -1.8675 31 1 8.8625 -0.6506 -4.2062 32 1 1.7163 -0.1868 -2.1401 33 1 1.6446 -1.7387 -1.2691 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401801256.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:17 Heat of formation + Delta-G solvation = -40.089713 kcal Electronic energy + Delta-G solvation = -12844.850263 eV Core-core repulsion = 10710.336536 eV Total energy + Delta-G solvation = -2134.513727 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.08033 -36.61830 -34.54989 -34.08807 -30.98567 -27.76462 -27.39938 -24.47455 -23.92351 -22.01930 -20.66487 -18.58626 -17.32290 -16.80255 -16.09101 -15.58438 -15.46355 -15.12346 -14.82235 -14.26925 -14.14008 -13.50528 -13.45909 -12.90540 -12.82126 -12.68237 -12.58320 -12.12769 -12.02906 -11.63199 -11.52259 -11.39943 -11.06182 -10.67106 -9.46904 -9.11357 -8.22851 -6.35056 1.40721 1.44838 1.52921 2.39637 3.09661 3.16919 3.57333 3.89456 3.94068 4.11559 4.13708 4.32484 4.56461 4.64172 4.71331 4.79857 4.86699 4.88578 5.02688 5.08480 5.17997 5.25141 5.34780 5.42424 5.50558 5.60774 5.94536 6.04322 6.43890 6.48184 6.71230 6.88099 7.36103 8.88593 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068909 B = 0.006961 C = 0.006621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.236395 B = 4021.522191 C = 4228.127012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.064 0.936 4 C 0.064 3.936 5 N -0.696 5.696 6 C 0.043 3.957 7 C 0.087 3.913 8 H 0.048 0.952 9 N -0.681 5.681 10 C 0.212 3.788 11 C -0.539 4.539 12 H 0.065 0.935 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.976 3.024 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.265 1.265 19 C -0.093 4.093 20 H 0.070 0.930 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.035 0.965 24 H 0.093 0.907 25 H 0.351 0.649 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.334 0.666 29 H -0.006 1.006 30 H -0.037 1.037 31 H 0.266 0.734 32 H 0.058 0.942 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.567 -1.374 9.344 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.082 0.918 4 C -0.065 4.065 5 N -0.328 5.328 6 C -0.089 4.089 7 C -0.024 4.024 8 H 0.067 0.933 9 N -0.311 5.311 10 C 0.084 3.916 11 C -0.577 4.577 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.800 3.200 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.190 1.190 19 C -0.131 4.131 20 H 0.089 0.911 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.054 0.946 24 H 0.111 0.889 25 H 0.170 0.830 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.151 0.849 29 H 0.012 0.988 30 H -0.019 1.019 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.627 -0.256 8.569 15.262 hybrid contribution 1.221 -1.476 0.219 1.928 sum -11.407 -1.732 8.787 14.503 Atomic orbital electron populations 1.21716 0.92856 1.02352 1.02536 1.21172 0.96681 0.99398 0.93651 0.91760 1.22061 0.86447 0.99112 0.98840 1.60184 1.09342 1.58351 1.04916 1.22485 0.98837 0.95289 0.92260 1.21603 0.96391 0.96856 0.87538 0.93326 1.60713 1.24335 1.09469 1.36562 1.19184 0.83966 0.94637 0.93802 1.21537 0.99430 1.22631 1.14147 0.91675 1.25992 0.96678 0.96448 1.00644 1.70096 1.09005 1.35563 1.42795 0.85347 0.77124 0.78891 0.78685 1.19317 1.20721 1.18961 1.21555 0.92780 1.00730 0.98074 0.91091 0.92382 0.92208 0.94640 0.88892 0.83006 0.94559 0.93305 0.84889 0.98822 1.01939 0.92572 0.92340 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.20 71.98 0.66 -1.81 16 2 C -0.09 -2.17 2.88 -10.74 -0.03 -2.20 16 3 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 4 C 0.06 1.43 5.83 86.33 0.50 1.93 16 5 N -0.70 -18.96 6.85 -513.97 -3.52 -22.48 16 6 C 0.04 1.43 5.80 86.33 0.50 1.93 16 7 C 0.09 3.30 2.63 44.97 0.12 3.42 16 8 H 0.05 2.11 7.80 -2.39 -0.02 2.09 16 9 N -0.68 -30.63 6.24 -495.29 -3.09 -33.72 16 10 C 0.21 11.82 5.24 85.56 0.45 12.26 16 11 C -0.54 -31.58 9.32 25.60 0.24 -31.34 16 12 H 0.07 3.68 7.81 -2.91 -0.02 3.65 16 13 C 0.00 0.04 5.46 84.65 0.46 0.50 16 14 N -0.93 -57.75 13.29 21.44 0.28 -57.47 16 15 Si 0.98 44.89 29.54 68.60 2.03 46.91 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 19 C -0.09 -2.82 4.90 30.67 0.15 -2.67 16 20 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.35 7.95 8.90 -89.70 -0.80 7.15 16 26 H 0.04 1.13 8.12 -2.39 -0.02 1.11 16 27 H 0.05 1.87 7.48 -2.39 -0.02 1.85 16 28 H 0.33 14.13 8.46 -89.69 -0.76 13.37 16 29 H -0.01 -0.39 8.06 -2.38 -0.02 -0.41 16 30 H -0.04 -2.20 7.46 -2.39 -0.02 -2.22 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -65.11 266.02 -1.72 -66.83 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -0.48 Total: 17.91 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 3.05 Total: -17.99 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -6.32 Total: -113.67 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.11 -1.72 -66.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401801256.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.738 kcal (2) G-P(sol) polarization free energy of solvation -65.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds