Wall clock time and date at job start Mon Mar 30 2020 02:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.50826 * 2 1 4 4 C 1.53044 * 109.49819 * 239.92722 * 2 1 3 5 5 N 1.46847 * 109.51335 * 180.84571 * 4 2 1 6 6 C 1.46830 * 111.21086 * 61.74856 * 5 4 2 7 7 C 1.53038 * 109.51757 * 298.25173 * 6 5 4 8 8 H 1.08997 * 109.50308 * 299.23764 * 7 6 5 9 9 N 1.46898 * 109.53798 * 179.13649 * 7 6 5 10 10 C 1.46898 * 110.99822 * 85.17319 * 9 7 6 11 11 C 1.50706 * 109.46701 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00015 * 0.02562 * 11 10 9 13 13 C 1.37886 * 119.99406 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00167 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99588 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47347 * 59.99885 * 15 13 11 17 17 H 1.48503 * 109.47207 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47273 * 299.99942 * 15 13 11 19 19 C 1.53117 * 109.53544 * 120.10815 * 2 1 3 20 20 H 1.09000 * 109.47699 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.46665 * 300.07559 * 1 2 3 22 22 H 1.09001 * 109.47042 * 60.06897 * 1 2 3 23 23 H 1.09002 * 109.46396 * 300.85881 * 4 2 1 24 24 H 1.08994 * 109.46485 * 60.83806 * 4 2 1 25 25 H 1.00904 * 111.00225 * 185.83346 * 5 4 2 26 26 H 1.08995 * 109.46742 * 178.23410 * 6 5 4 27 27 H 1.09004 * 109.46459 * 58.26240 * 6 5 4 28 28 H 1.00904 * 111.00133 * 209.13439 * 9 7 6 29 29 H 1.08991 * 109.47050 * 300.00154 * 10 9 7 30 30 H 1.09001 * 109.46781 * 60.00508 * 10 9 7 31 31 H 0.96998 * 120.00177 * 179.97438 * 14 13 11 32 32 H 1.08997 * 109.52073 * 297.51681 * 19 2 1 33 33 H 1.09004 * 109.52347 * 57.71027 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0408 -0.7229 -1.2485 5 7 3.5092 -0.7408 -1.2386 6 6 4.0237 -1.4717 -0.0737 7 6 3.5721 -0.7712 1.2098 8 1 3.9681 0.2441 1.2289 9 7 4.0693 -1.5137 2.3757 10 6 5.4389 -1.1052 2.7150 11 6 5.9136 -1.8860 3.9134 12 1 5.2631 -2.6132 4.3763 13 6 7.1785 -1.6718 4.4187 14 7 7.9708 -0.7867 3.8546 15 14 7.7672 -2.6401 5.9037 16 1 7.7479 -4.0910 5.5880 17 1 9.1514 -2.2262 6.2475 18 1 6.8703 -2.3724 7.0566 19 6 2.0420 -0.7239 1.2483 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5151 0.8894 22 1 -0.3633 0.5128 -0.8906 23 1 1.6652 -1.7461 -1.2549 24 1 1.6900 -0.2016 -2.1391 25 1 3.8719 -1.1277 -2.0970 26 1 5.1128 -1.4944 -0.1112 27 1 3.6388 -2.4914 -0.0857 28 1 3.4521 -1.4014 3.1660 29 1 6.0969 -1.3021 1.8687 30 1 5.4535 -0.0402 2.9466 31 1 8.8605 -0.6357 4.2103 32 1 1.7165 -0.1875 2.1396 33 1 1.6466 -1.7395 1.2684 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401801258.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:19 Heat of formation + Delta-G solvation = -39.846134 kcal Electronic energy + Delta-G solvation = -12840.346098 eV Core-core repulsion = 10705.842933 eV Total energy + Delta-G solvation = -2134.503165 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.04161 -36.61162 -34.53230 -34.13093 -31.00397 -27.79135 -27.42827 -24.60483 -23.98560 -21.67306 -20.62281 -18.61061 -17.30971 -16.73298 -16.32188 -15.88454 -15.43330 -14.96848 -14.66282 -14.22770 -14.16206 -13.61379 -13.41014 -12.92032 -12.76279 -12.66168 -12.63051 -12.25670 -12.08844 -11.61324 -11.50415 -11.25058 -11.09342 -10.66934 -9.43180 -9.16775 -8.23151 -6.35465 1.40668 1.44800 1.52937 2.39471 3.09666 3.11936 3.65167 3.81830 3.91453 4.03893 4.26696 4.42282 4.59116 4.64206 4.72454 4.79601 4.88658 4.89602 4.99687 5.09978 5.13018 5.22588 5.27761 5.35575 5.47649 5.61089 5.96744 6.05625 6.45165 6.50467 6.70939 6.87698 7.35734 8.88462 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068794 B = 0.006965 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.916207 B = 4019.146506 C = 4231.720437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 H 0.064 0.936 4 C 0.063 3.937 5 N -0.699 5.699 6 C 0.081 3.919 7 C 0.087 3.913 8 H 0.015 0.985 9 N -0.684 5.684 10 C 0.213 3.787 11 C -0.539 4.539 12 H 0.066 0.934 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.977 3.023 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.265 1.265 19 C -0.108 4.108 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.093 0.907 25 H 0.353 0.647 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.337 0.663 29 H -0.001 1.001 30 H -0.045 1.045 31 H 0.266 0.734 32 H 0.063 0.937 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.444 -0.084 -8.134 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 H 0.082 0.918 4 C -0.066 4.066 5 N -0.331 5.331 6 C -0.049 4.049 7 C -0.024 4.024 8 H 0.033 0.967 9 N -0.315 5.315 10 C 0.085 3.915 11 C -0.577 4.577 12 H 0.084 0.916 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.800 3.200 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.190 1.190 19 C -0.146 4.146 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.089 0.911 23 H 0.053 0.947 24 H 0.112 0.888 25 H 0.172 0.828 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.155 0.845 29 H 0.017 0.983 30 H -0.027 1.027 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.012 0.058 -8.203 15.382 hybrid contribution 0.619 -0.237 0.842 1.071 sum -12.394 -0.179 -7.361 14.416 Atomic orbital electron populations 1.21725 0.92683 1.02422 1.02640 1.21150 0.96770 0.99260 0.93530 0.91750 1.22064 0.86587 0.99104 0.98816 1.60144 1.09269 1.58684 1.05052 1.21625 0.98401 0.94724 0.90158 1.21488 0.95629 0.94016 0.91269 0.96660 1.60493 1.04018 1.59026 1.07969 1.19197 0.85831 0.91735 0.94763 1.21537 1.00218 1.22430 1.13534 0.91590 1.26008 0.96692 0.96372 1.00741 1.70097 1.09104 1.35506 1.42795 0.85333 0.77215 0.78803 0.78612 1.19231 1.20725 1.18988 1.21779 0.92642 1.01297 0.98840 0.92167 0.92213 0.91070 0.94687 0.88829 0.82778 0.93570 0.94779 0.84542 0.98316 1.02701 0.92562 0.91864 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.20 71.98 0.66 -1.72 16 2 C -0.09 -2.09 2.88 -10.74 -0.03 -2.12 16 3 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.06 1.43 5.83 86.33 0.50 1.94 16 5 N -0.70 -19.77 6.84 -514.04 -3.52 -23.29 16 6 C 0.08 2.89 6.05 86.33 0.52 3.42 16 7 C 0.09 3.32 2.65 44.97 0.12 3.44 16 8 H 0.02 0.67 7.80 -2.39 -0.02 0.65 16 9 N -0.68 -30.94 6.30 -495.30 -3.12 -34.06 16 10 C 0.21 11.95 5.24 85.56 0.45 12.40 16 11 C -0.54 -31.66 9.32 25.60 0.24 -31.42 16 12 H 0.07 3.73 7.81 -2.91 -0.02 3.70 16 13 C 0.00 0.00 5.46 84.66 0.46 0.47 16 14 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 15 Si 0.98 44.95 29.54 68.60 2.03 46.98 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 C -0.11 -3.15 4.55 30.68 0.14 -3.01 16 20 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 21 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.03 0.76 8.14 -2.39 -0.02 0.75 16 24 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.35 8.34 8.90 -89.69 -0.80 7.54 16 26 H 0.05 1.89 7.49 -2.39 -0.02 1.87 16 27 H 0.03 1.19 8.14 -2.38 -0.02 1.18 16 28 H 0.34 14.36 8.35 -89.69 -0.75 13.61 16 29 H 0.00 -0.08 7.47 -2.39 -0.02 -0.10 16 30 H -0.04 -2.73 8.06 -2.39 -0.02 -2.75 16 31 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -65.81 265.95 -1.73 -67.54 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -0.47 Total: 17.15 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 3.07 Total: -16.61 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -6.35 Total: -115.06 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.81 -1.73 -67.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401801258.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.692 kcal (2) G-P(sol) polarization free energy of solvation -65.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds