Wall clock time and date at job start Mon Mar 30 2020 02:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49954 * 2 1 4 4 C 1.53029 * 109.53749 * 239.89805 * 2 1 3 5 5 N 1.46850 * 109.52590 * 299.21507 * 4 2 1 6 6 C 1.46849 * 111.19752 * 298.26351 * 5 4 2 7 7 C 1.53031 * 109.52472 * 61.73533 * 6 5 4 8 8 H 1.09004 * 109.53805 * 60.78364 * 7 6 5 9 9 N 1.46905 * 109.50220 * 180.87834 * 7 6 5 10 10 C 1.46902 * 110.99800 * 274.80452 * 9 7 6 11 11 C 1.50706 * 109.46577 * 180.02562 * 10 9 7 12 12 H 1.07995 * 120.00167 * 359.72326 * 11 10 9 13 13 C 1.37879 * 119.99394 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47487 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47233 * 120.00158 * 15 13 11 18 18 H 1.48508 * 109.46883 * 239.99963 * 15 13 11 19 19 C 1.53119 * 109.28329 * 300.82118 * 7 6 5 20 20 H 1.08996 * 109.47361 * 299.92892 * 1 2 3 21 21 H 1.09000 * 109.47099 * 59.92584 * 1 2 3 22 22 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46514 * 59.23508 * 4 2 1 24 24 H 1.09007 * 109.46237 * 179.21138 * 4 2 1 25 25 H 1.00894 * 111.00346 * 174.16032 * 5 4 2 26 26 H 1.09001 * 109.45964 * 301.72185 * 6 5 4 27 27 H 1.08997 * 109.45837 * 181.75487 * 6 5 4 28 28 H 1.00891 * 110.99988 * 38.75867 * 9 7 6 29 29 H 1.09000 * 109.47263 * 60.00269 * 10 9 7 30 30 H 1.09001 * 109.47582 * 299.99548 * 10 9 7 31 31 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 32 32 H 1.08995 * 109.52532 * 177.55663 * 19 7 6 33 33 H 1.08994 * 109.51998 * 297.75019 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7233 -1.2477 5 7 1.5692 -2.1137 -1.2374 6 6 2.0863 -2.8416 -0.0716 7 6 1.5758 -2.1815 1.2112 8 1 0.4865 -2.2165 1.2306 9 7 2.1103 -2.8974 2.3773 10 6 1.2686 -4.0523 2.7173 11 6 1.8468 -4.7597 3.9159 12 1 2.7516 -4.3910 4.3760 13 6 1.2239 -5.8812 4.4211 14 7 0.1256 -6.3339 3.8568 15 14 1.9401 -6.7576 5.9072 16 1 3.1703 -6.0545 6.3512 17 1 0.9445 -6.7579 7.0091 18 1 2.2750 -8.1576 5.5423 19 6 2.0412 -0.7232 1.2491 20 1 -0.3634 0.5127 0.8906 21 1 -0.3633 0.5150 -0.8893 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6678 -0.2192 -2.1388 24 1 3.1317 -0.7104 -1.2536 25 1 1.8135 -2.5849 -2.0955 26 1 3.1760 -2.8186 -0.0831 27 1 1.7446 -3.8760 -0.1086 28 1 3.0662 -3.1800 2.2212 29 1 1.2347 -4.7387 1.8712 30 1 0.2597 -3.7111 2.9490 31 1 -0.3124 -7.1231 4.2121 32 1 1.6435 -0.2370 2.1399 33 1 3.1304 -0.6889 1.2697 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401801259.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:22 Heat of formation + Delta-G solvation = -14.150723 kcal Electronic energy + Delta-G solvation = -12992.767718 eV Core-core repulsion = 10859.378790 eV Total energy + Delta-G solvation = -2133.388928 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.95019 -34.83189 -32.64008 -32.43329 -29.16224 -26.51875 -25.76087 -23.25239 -22.11153 -21.00708 -18.48720 -16.78843 -16.00454 -14.87734 -14.36800 -14.13604 -13.98476 -13.67107 -13.36983 -13.09394 -12.46436 -12.07701 -11.76423 -11.28343 -11.23867 -10.94387 -10.77106 -10.74364 -10.37688 -10.21949 -10.05015 -9.70481 -9.10242 -8.48289 -8.25933 -7.25790 -6.01196 -4.03139 3.31998 3.39183 3.44379 4.35762 4.46363 4.91982 5.11706 5.20007 5.34593 5.42206 5.48055 5.59492 5.72655 5.87201 5.90786 5.91830 6.11129 6.21366 6.30526 6.37509 6.51834 6.68801 6.81146 7.12653 7.33479 7.47024 7.52289 7.81952 8.16131 8.42751 8.65133 9.06663 9.61735 11.09802 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067506 B = 0.007235 C = 0.007147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.681394 B = 3869.002535 C = 3916.583428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.066 0.934 4 C 0.063 3.937 5 N -0.684 5.684 6 C 0.031 3.969 7 C 0.089 3.911 8 H 0.081 0.919 9 N -0.683 5.683 10 C 0.194 3.806 11 C -0.514 4.514 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.898 3.102 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 C -0.103 4.103 20 H 0.047 0.953 21 H 0.044 0.956 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.024 0.976 25 H 0.336 0.664 26 H 0.025 0.975 27 H 0.074 0.926 28 H 0.326 0.674 29 H -0.013 1.013 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.068 0.932 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.261 9.774 -9.150 13.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.085 0.915 4 C -0.066 4.066 5 N -0.315 5.315 6 C -0.100 4.100 7 C -0.022 4.022 8 H 0.099 0.901 9 N -0.313 5.313 10 C 0.068 3.932 11 C -0.553 4.553 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.141 4.141 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.043 0.957 25 H 0.153 0.847 26 H 0.043 0.957 27 H 0.093 0.907 28 H 0.143 0.857 29 H 0.005 0.995 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.219 10.192 -8.343 13.357 hybrid contribution 1.485 -1.382 -0.236 2.043 sum 3.705 8.810 -8.579 12.843 Atomic orbital electron populations 1.21742 0.94613 1.02984 1.00249 1.21176 0.96900 0.98121 0.94705 0.91528 1.21933 0.96539 0.89805 0.98334 1.60244 1.63625 1.02481 1.05154 1.22799 0.96561 0.98556 0.92091 1.21590 1.00165 0.92925 0.87539 0.90070 1.60810 1.05984 1.30231 1.34231 1.19586 0.93096 0.85638 0.94918 1.21249 1.10620 1.10139 1.13305 0.91981 1.24994 0.95042 0.97172 0.97399 1.69976 1.18573 1.24105 1.41003 0.86443 0.79122 0.79248 0.82595 1.19692 1.20975 1.21128 1.21607 0.99871 0.95772 0.96884 0.93398 0.93654 0.91027 0.91350 0.95738 0.84702 0.95715 0.90726 0.85731 0.99524 0.95409 0.92987 0.91358 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.75 37.16 0.33 -1.51 16 2 C -0.09 -1.17 3.21 -90.54 -0.29 -1.46 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.06 0.78 5.99 -3.84 -0.02 0.76 16 5 N -0.68 -9.51 6.13 -113.82 -0.70 -10.21 16 6 C 0.03 0.51 5.80 -3.84 -0.02 0.49 16 7 C 0.09 1.63 2.28 -67.63 -0.15 1.48 16 8 H 0.08 1.65 6.24 -51.93 -0.32 1.32 16 9 N -0.68 -14.94 6.24 -107.90 -0.67 -15.62 16 10 C 0.19 5.17 5.24 -4.97 -0.03 5.14 16 11 C -0.51 -14.79 9.32 -34.44 -0.32 -15.11 16 12 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 15 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 C -0.10 -1.60 5.12 -26.61 -0.14 -1.74 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.07 1.10 6.01 -51.93 -0.31 0.79 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.02 0.30 8.14 -51.92 -0.42 -0.13 16 25 H 0.34 4.00 8.90 -39.30 -0.35 3.65 16 26 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 27 H 0.07 1.36 7.49 -51.93 -0.39 0.98 16 28 H 0.33 6.84 8.45 -39.30 -0.33 6.51 16 29 H -0.01 -0.36 7.47 -51.93 -0.39 -0.75 16 30 H 0.03 0.80 8.06 -51.93 -0.42 0.39 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 261.53 15.07 3.94 3.94 Total: -1.00 -29.79 261.53 -7.90 -37.69 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.44 Total: 4.14 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.74 Total: -10.45 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.63 Total: -52.19 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.79 -7.90 -37.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401801259.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.534 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds