Wall clock time and date at job start Mon Mar 30 2020 02:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49954 * 2 1 4 4 C 1.53029 * 109.53749 * 239.89805 * 2 1 3 5 5 N 1.46850 * 109.52590 * 299.21507 * 4 2 1 6 6 C 1.46849 * 111.19752 * 298.26351 * 5 4 2 7 7 C 1.53031 * 109.52472 * 61.73533 * 6 5 4 8 8 H 1.09004 * 109.53805 * 60.78364 * 7 6 5 9 9 N 1.46905 * 109.50220 * 180.87834 * 7 6 5 10 10 C 1.46902 * 110.99800 * 274.80452 * 9 7 6 11 11 C 1.50706 * 109.46577 * 180.02562 * 10 9 7 12 12 H 1.07995 * 120.00167 * 359.72326 * 11 10 9 13 13 C 1.37879 * 119.99394 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47487 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47233 * 120.00158 * 15 13 11 18 18 H 1.48508 * 109.46883 * 239.99963 * 15 13 11 19 19 C 1.53119 * 109.28329 * 300.82118 * 7 6 5 20 20 H 1.08996 * 109.47361 * 299.92892 * 1 2 3 21 21 H 1.09000 * 109.47099 * 59.92584 * 1 2 3 22 22 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46514 * 59.23508 * 4 2 1 24 24 H 1.09007 * 109.46237 * 179.21138 * 4 2 1 25 25 H 1.00894 * 111.00346 * 174.16032 * 5 4 2 26 26 H 1.09001 * 109.45964 * 301.72185 * 6 5 4 27 27 H 1.08997 * 109.45837 * 181.75487 * 6 5 4 28 28 H 1.00891 * 110.99988 * 38.75867 * 9 7 6 29 29 H 1.09000 * 109.47263 * 60.00269 * 10 9 7 30 30 H 1.09001 * 109.47582 * 299.99548 * 10 9 7 31 31 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 32 32 H 1.08995 * 109.52532 * 177.55663 * 19 7 6 33 33 H 1.08994 * 109.51998 * 297.75019 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7233 -1.2477 5 7 1.5692 -2.1137 -1.2374 6 6 2.0863 -2.8416 -0.0716 7 6 1.5758 -2.1815 1.2112 8 1 0.4865 -2.2165 1.2306 9 7 2.1103 -2.8974 2.3773 10 6 1.2686 -4.0523 2.7173 11 6 1.8468 -4.7597 3.9159 12 1 2.7516 -4.3910 4.3760 13 6 1.2239 -5.8812 4.4211 14 7 0.1256 -6.3339 3.8568 15 14 1.9401 -6.7576 5.9072 16 1 3.1703 -6.0545 6.3512 17 1 0.9445 -6.7579 7.0091 18 1 2.2750 -8.1576 5.5423 19 6 2.0412 -0.7232 1.2491 20 1 -0.3634 0.5127 0.8906 21 1 -0.3633 0.5150 -0.8893 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6678 -0.2192 -2.1388 24 1 3.1317 -0.7104 -1.2536 25 1 1.8135 -2.5849 -2.0955 26 1 3.1760 -2.8186 -0.0831 27 1 1.7446 -3.8760 -0.1086 28 1 3.0662 -3.1800 2.2212 29 1 1.2347 -4.7387 1.8712 30 1 0.2597 -3.7111 2.9490 31 1 -0.3124 -7.1231 4.2121 32 1 1.6435 -0.2370 2.1399 33 1 3.1304 -0.6889 1.2697 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401801259.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:22 Heat of formation + Delta-G solvation = -36.575807 kcal Electronic energy + Delta-G solvation = -12993.740142 eV Core-core repulsion = 10859.378790 eV Total energy + Delta-G solvation = -2134.361353 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.23264 -36.57965 -34.50141 -33.79373 -30.85685 -27.72250 -27.63515 -24.47586 -23.99997 -22.60794 -19.76420 -18.57430 -17.59961 -16.77811 -15.92061 -15.62435 -15.11111 -15.03486 -14.80466 -14.41095 -14.21273 -13.92476 -13.48433 -12.80952 -12.68044 -12.64320 -12.43515 -12.13035 -12.08248 -11.59499 -11.46335 -11.35102 -10.97485 -10.68423 -9.39775 -9.09420 -8.23198 -6.35032 1.40398 1.41438 1.55420 2.39395 3.09543 3.21356 3.61269 3.90684 3.95796 4.12899 4.20328 4.32625 4.54105 4.69727 4.76828 4.85344 4.87031 4.88405 5.04781 5.20093 5.23148 5.23885 5.31334 5.44859 5.59819 5.61496 5.96894 6.06371 6.45444 6.50904 6.72869 6.89003 7.36175 8.88574 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067506 B = 0.007235 C = 0.007147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.681394 B = 3869.002535 C = 3916.583428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.095 0.905 4 C 0.063 3.937 5 N -0.690 5.690 6 C 0.043 3.957 7 C 0.088 3.912 8 H 0.054 0.946 9 N -0.683 5.683 10 C 0.213 3.787 11 C -0.537 4.537 12 H 0.065 0.935 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.975 3.025 16 H -0.262 1.262 17 H -0.278 1.278 18 H -0.276 1.276 19 C -0.097 4.097 20 H 0.045 0.955 21 H 0.065 0.935 22 H 0.042 0.958 23 H 0.094 0.906 24 H 0.035 0.965 25 H 0.350 0.650 26 H 0.034 0.966 27 H 0.047 0.953 28 H 0.333 0.667 29 H -0.038 1.038 30 H -0.006 1.006 31 H 0.265 0.735 32 H 0.057 0.943 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.571 10.769 -9.450 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.113 0.887 4 C -0.066 4.066 5 N -0.322 5.322 6 C -0.089 4.089 7 C -0.023 4.023 8 H 0.073 0.927 9 N -0.312 5.312 10 C 0.085 3.915 11 C -0.576 4.576 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.799 3.201 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.135 4.135 20 H 0.065 0.935 21 H 0.084 0.916 22 H 0.062 0.938 23 H 0.112 0.888 24 H 0.053 0.947 25 H 0.169 0.831 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.150 0.850 29 H -0.020 1.020 30 H 0.012 0.988 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.541 11.210 -8.671 14.608 hybrid contribution 1.034 -1.644 -0.201 1.953 sum 4.576 9.566 -8.872 13.826 Atomic orbital electron populations 1.21706 0.95048 1.01408 1.01223 1.21218 0.96484 0.99313 0.93562 0.88716 1.22037 0.97223 0.88439 0.98887 1.60169 1.63859 1.03454 1.04720 1.22478 0.96843 0.97148 0.92401 1.21627 0.98641 0.94701 0.87344 0.92740 1.60711 1.05724 1.28079 1.36729 1.19176 0.92155 0.86455 0.93738 1.21601 1.10967 1.10882 1.14112 0.91726 1.25988 0.95261 0.97907 1.00648 1.70108 1.19914 1.24689 1.42704 0.85253 0.78565 0.77996 0.78276 1.18616 1.20344 1.20193 1.21550 1.00323 0.93424 0.98188 0.93546 0.91601 0.93844 0.88807 0.94708 0.83143 0.94738 0.93459 0.84993 1.02006 0.98816 0.92599 0.92372 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.75 71.98 0.63 -2.79 16 2 C -0.09 -2.03 3.21 -10.74 -0.03 -2.07 16 3 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.06 1.35 5.99 86.32 0.52 1.87 16 5 N -0.69 -18.20 6.13 -514.01 -3.15 -21.35 16 6 C 0.04 1.41 5.80 86.32 0.50 1.91 16 7 C 0.09 3.27 2.28 44.96 0.10 3.37 16 8 H 0.05 2.33 6.24 -2.38 -0.01 2.31 16 9 N -0.68 -30.60 6.24 -495.28 -3.09 -33.69 16 10 C 0.21 11.82 5.24 85.56 0.45 12.27 16 11 C -0.54 -31.47 9.32 25.60 0.24 -31.23 16 12 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 13 C 0.00 0.01 5.46 84.66 0.46 0.47 16 14 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 15 Si 0.98 44.96 29.54 68.60 2.03 46.98 16 16 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 C -0.10 -2.89 5.12 30.68 0.16 -2.73 16 20 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.04 1.33 6.01 -2.39 -0.01 1.32 16 23 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.35 7.71 8.90 -89.70 -0.80 6.92 16 26 H 0.03 1.06 8.12 -2.39 -0.02 1.05 16 27 H 0.05 1.80 7.49 -2.39 -0.02 1.78 16 28 H 0.33 14.09 8.45 -89.70 -0.76 13.33 16 29 H -0.04 -2.24 7.47 -2.39 -0.02 -2.26 16 30 H -0.01 -0.39 8.06 -2.39 -0.02 -0.41 16 31 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -64.94 261.53 -1.38 -66.31 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -0.47 Total: 18.01 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 3.02 Total: -18.94 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -5.96 Total: -112.37 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.94 -1.38 -66.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401801259.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.739 kcal (2) G-P(sol) polarization free energy of solvation -64.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds