Wall clock time and date at job start Mon Mar 30 2020 01:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 110.76086 * 2 1 4 4 C 1.55133 * 110.70450 * 236.79877 * 2 1 3 5 5 C 1.54906 * 101.65277 * 205.95964 * 4 2 1 6 6 N 1.47846 * 104.79444 * 37.07494 * 5 4 2 7 7 C 1.46902 * 110.99900 * 213.63558 * 6 5 4 8 8 C 1.53001 * 109.47217 * 290.83894 * 7 6 5 9 9 C 1.50694 * 109.47168 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00563 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.47441 * 108.56555 * 335.89851 * 6 5 4 18 18 H 1.09004 * 109.46998 * 296.79654 * 1 2 3 19 19 H 1.08998 * 109.47188 * 56.79892 * 1 2 3 20 20 H 1.09003 * 109.46825 * 176.80263 * 1 2 3 21 21 H 1.00903 * 111.00498 * 303.19780 * 3 2 1 22 22 H 1.00902 * 111.00379 * 67.15859 * 3 2 1 23 23 H 1.09000 * 110.99314 * 324.05366 * 4 2 1 24 24 H 1.09000 * 110.98943 * 87.83450 * 4 2 1 25 25 H 1.08995 * 110.37633 * 278.24281 * 5 4 2 26 26 H 1.09000 * 110.37485 * 155.90131 * 5 4 2 27 27 H 1.09002 * 109.46978 * 170.84164 * 7 6 5 28 28 H 1.08998 * 109.47251 * 50.83682 * 7 6 5 29 29 H 1.09007 * 109.46922 * 59.99765 * 8 7 6 30 30 H 1.09003 * 109.46836 * 300.00520 * 8 7 6 31 31 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.88732 * 120.39444 * 17 6 5 33 33 H 1.09000 * 109.89158 * 241.42547 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0508 1.3736 0.0000 4 6 2.0785 -0.7946 -1.2142 5 6 3.4651 -1.2465 -0.6920 6 7 3.2490 -1.5501 0.7388 7 6 4.4406 -1.2215 1.5325 8 6 5.5673 -2.1981 1.1892 9 6 6.7895 -1.8613 2.0039 10 1 6.7651 -1.0339 2.6975 11 6 7.9391 -2.6097 1.8638 12 7 7.9687 -3.6177 1.0196 13 14 9.4543 -2.1918 2.8732 14 1 10.2933 -1.2197 2.1274 15 1 9.0378 -1.5954 4.1678 16 1 10.2366 -3.4284 3.1268 17 6 2.0757 -0.7904 1.2079 18 1 -0.3633 0.4633 0.9173 19 1 -0.3633 0.5627 -0.8599 20 1 -0.3633 -1.0261 -0.0573 21 1 1.6967 1.8946 -0.7882 22 1 1.8370 1.8414 0.8681 23 1 1.4459 -1.6540 -1.4365 24 1 2.1806 -0.1511 -2.0881 25 1 4.1930 -0.4430 -0.8036 26 1 3.7985 -2.1381 -1.2229 27 1 4.2032 -1.2992 2.5935 28 1 4.7596 -0.2044 1.3050 29 1 5.8047 -2.1205 0.1281 30 1 5.2483 -3.2152 1.4167 31 1 8.7776 -4.1439 0.9208 32 1 1.3133 -1.4762 1.5772 33 1 2.3716 -0.1033 2.0006 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405770755.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:45 Heat of formation + Delta-G solvation = -32.727514 kcal Electronic energy + Delta-G solvation = -12920.963764 eV Core-core repulsion = 10786.769286 eV Total energy + Delta-G solvation = -2134.194478 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.39964 -36.37942 -34.80763 -32.12174 -30.33866 -29.89533 -27.23056 -25.42488 -23.28777 -21.44051 -20.50954 -18.55332 -16.94672 -16.51929 -16.40439 -16.16805 -15.65456 -14.62315 -14.40122 -13.97127 -13.92239 -13.66153 -13.54240 -13.00163 -12.89184 -12.61679 -12.34923 -12.18438 -11.98492 -11.76546 -11.58599 -11.31073 -11.16539 -10.55588 -9.62460 -9.11948 -8.20031 -6.32048 1.39519 1.41984 1.53154 2.40645 3.12817 3.21401 3.52318 3.55238 3.89345 4.07910 4.42280 4.45037 4.52159 4.58163 4.68535 4.80767 4.87973 4.98541 5.02415 5.08613 5.16431 5.20410 5.25208 5.44921 5.65764 5.78941 6.09582 6.25589 6.32002 6.35619 6.63777 6.84912 7.36997 8.92455 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.072833 B = 0.007063 C = 0.006844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.346406 B = 3963.518958 C = 4090.276729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.846 5.846 4 C -0.106 4.106 5 C 0.053 3.947 6 N -0.542 5.542 7 C 0.081 3.919 8 C 0.039 3.961 9 C -0.546 4.546 10 H 0.059 0.941 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.970 3.030 14 H -0.271 1.271 15 H -0.262 1.262 16 H -0.280 1.280 17 C 0.050 3.950 18 H 0.063 0.937 19 H 0.069 0.931 20 H 0.066 0.934 21 H 0.351 0.649 22 H 0.347 0.653 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.030 0.970 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.018 0.982 29 H -0.011 1.011 30 H -0.010 1.010 31 H 0.264 0.736 32 H 0.083 0.917 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.460 8.799 -2.364 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.004 3.996 3 N -0.379 5.379 4 C -0.144 4.144 5 C -0.075 4.075 6 N -0.266 5.266 7 C -0.047 4.047 8 C 0.001 3.999 9 C -0.585 4.585 10 H 0.077 0.923 11 C -0.198 4.198 12 N -0.573 5.573 13 Si 0.793 3.207 14 H -0.197 1.197 15 H -0.187 1.187 16 H -0.205 1.205 17 C -0.078 4.078 18 H 0.082 0.918 19 H 0.088 0.912 20 H 0.085 0.915 21 H 0.165 0.835 22 H 0.161 0.839 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.007 0.993 30 H 0.009 0.991 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.720 7.797 -2.422 15.965 hybrid contribution 0.302 0.936 0.378 1.054 sum -13.418 8.733 -2.043 16.139 Atomic orbital electron populations 1.22376 0.93911 1.03236 1.02596 1.21976 0.93500 0.89339 0.94782 1.58760 1.67509 1.02724 1.08865 1.22734 0.94719 0.99623 0.97355 1.22836 0.97800 0.98243 0.88589 1.63600 1.04423 1.55419 1.03168 1.22089 0.89947 0.96373 0.96273 1.18871 0.92206 0.93905 0.94904 1.21629 0.98054 1.15064 1.23719 0.92317 1.26011 1.02447 0.94665 0.96649 1.70123 1.29331 1.20192 1.37616 0.85386 0.78370 0.77820 0.79082 1.19675 1.18662 1.20487 1.22997 0.92905 0.95204 0.96731 0.91789 0.91191 0.91529 0.83500 0.83893 0.89658 0.89716 0.95199 0.92739 0.92496 0.96352 0.99310 0.99129 0.92703 0.89873 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 8.76 71.98 0.63 -2.04 16 2 C 0.10 2.26 1.09 4.71 0.01 2.27 16 3 N -0.85 -18.42 8.99 -146.94 -1.32 -19.74 16 4 C -0.11 -2.75 6.21 31.98 0.20 -2.55 16 5 C 0.05 1.96 5.76 86.77 0.50 2.46 16 6 N -0.54 -21.37 5.16 -885.54 -4.57 -25.95 16 7 C 0.08 3.77 4.50 86.30 0.39 4.16 16 8 C 0.04 2.21 5.02 29.85 0.15 2.36 16 9 C -0.55 -32.82 9.11 25.60 0.23 -32.59 16 10 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 11 C 0.00 0.00 5.46 84.66 0.46 0.47 16 12 N -0.93 -58.96 13.29 21.45 0.28 -58.68 16 13 Si 0.97 45.64 29.54 68.60 2.03 47.67 16 14 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 C 0.05 1.49 6.18 86.65 0.54 2.03 16 18 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 19 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.07 1.11 8.11 -2.39 -0.02 1.09 16 21 H 0.35 6.00 9.03 -89.69 -0.81 5.20 16 22 H 0.35 6.65 8.91 -89.69 -0.80 5.85 16 23 H 0.08 2.03 8.02 -2.39 -0.02 2.01 16 24 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.03 1.21 7.62 -2.39 -0.02 1.20 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.06 2.58 8.03 -2.39 -0.02 2.56 16 28 H 0.02 0.87 7.85 -2.39 -0.02 0.85 16 29 H -0.01 -0.71 7.49 -2.38 -0.02 -0.73 16 30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 32 H 0.08 2.29 7.82 -2.39 -0.02 2.27 16 33 H 0.05 1.53 7.34 -2.39 -0.02 1.51 16 Total: -1.00 -68.59 267.36 -1.00 -69.59 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -0.53 Total: 10.55 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 3.10 Total: -23.44 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -5.61 Total: -104.37 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -68.59 -1.00 -69.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405770755.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.865 kcal (2) G-P(sol) polarization free energy of solvation -68.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds