Wall clock time and date at job start Mon Mar 30 2020 02:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46806 * 2 1 4 4 C 1.50695 * 109.46721 * 119.99950 * 2 1 3 5 5 H 1.07997 * 119.99737 * 120.00361 * 4 2 1 6 6 C 1.37878 * 120.00421 * 299.99620 * 4 2 1 7 7 N 1.31517 * 119.99643 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00128 * 180.02562 * 6 4 2 9 9 H 1.48489 * 109.47146 * 60.00149 * 8 6 4 10 10 H 1.48505 * 109.46747 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47183 * 299.99898 * 8 6 4 12 12 N 1.46894 * 109.46842 * 239.99836 * 2 1 3 13 13 C 1.48566 * 111.00010 * 180.12771 * 12 2 1 14 14 C 1.54373 * 104.59692 * 200.96313 * 13 12 2 15 15 C 1.54263 * 105.06221 * 23.84843 * 14 13 12 16 16 C 1.52998 * 110.32654 * 241.00393 * 15 14 13 17 17 N 1.46905 * 110.32320 * 118.89877 * 15 14 13 18 18 C 1.48564 * 111.00039 * 64.71064 * 12 2 1 19 19 H 1.08999 * 109.46806 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47157 * 300.00344 * 1 2 3 21 21 H 1.08997 * 109.47122 * 60.00108 * 1 2 3 22 22 H 0.97001 * 119.99943 * 179.97438 * 7 6 4 23 23 H 1.08995 * 110.41350 * 82.17681 * 13 12 2 24 24 H 1.09003 * 110.40743 * 319.73816 * 13 12 2 25 25 H 1.09004 * 110.32485 * 264.95785 * 14 13 12 26 26 H 1.08997 * 110.33002 * 142.74846 * 14 13 12 27 27 H 1.09001 * 109.46952 * 297.17475 * 16 15 14 28 28 H 1.09006 * 109.47149 * 57.17214 * 16 15 14 29 29 H 1.09000 * 109.47462 * 177.17403 * 16 15 14 30 30 H 1.00901 * 110.99869 * 61.45738 * 17 15 14 31 31 H 1.00896 * 110.99543 * 185.40861 * 17 15 14 32 32 H 1.09001 * 110.41341 * 40.25723 * 18 12 2 33 33 H 1.09001 * 110.40734 * 277.80968 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8073 -1.1191 4.0078 10 1 1.8268 -0.4199 5.2204 11 1 1.8279 -2.5198 4.0082 12 7 2.0197 -0.6925 -1.1994 13 6 3.5048 -0.7150 -1.2322 14 6 3.8575 -0.9542 -2.7160 15 6 2.6298 -0.4551 -3.5054 16 6 2.0132 -1.6014 -4.3096 17 7 3.0112 0.6466 -4.3991 18 6 1.6385 0.0438 -2.4322 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 0.7082 1.1610 3.4844 23 1 3.8864 -1.5282 -0.6148 24 1 3.9070 0.2404 -0.8951 25 1 4.0198 -2.0163 -2.9001 26 1 4.7432 -0.3818 -2.9917 27 1 2.7346 -1.9589 -5.0443 28 1 1.7467 -2.4158 -3.6359 29 1 1.1189 -1.2461 -4.8217 30 1 3.6954 0.3430 -5.0758 31 1 2.2013 1.0392 -4.8550 32 1 1.7486 1.1179 -2.2829 33 1 0.6149 -0.1983 -2.7183 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405852999.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:35 Heat of formation + Delta-G solvation = -0.658395 kcal Electronic energy + Delta-G solvation = -13335.963242 eV Core-core repulsion = 11203.159386 eV Total energy + Delta-G solvation = -2132.803857 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.79549 -34.97324 -32.54077 -30.29690 -28.50631 -27.67611 -25.67563 -24.41600 -21.37739 -19.56766 -18.86283 -16.30115 -15.40004 -15.27724 -14.65971 -14.25711 -13.38695 -13.15299 -12.85973 -12.51213 -12.40491 -11.93298 -11.37150 -11.13343 -10.87927 -10.68698 -10.65123 -10.45244 -10.26409 -10.04393 -9.93503 -9.73739 -8.82493 -8.53745 -8.38949 -7.25832 -5.96845 -4.01301 3.34930 3.38858 3.41947 4.43743 4.65764 4.98112 5.22521 5.31101 5.38372 5.41353 5.76785 5.83731 5.93145 6.24687 6.30191 6.34192 6.43334 6.51258 6.72061 6.75676 6.88153 7.10668 7.12015 7.40228 7.52491 7.60954 7.69123 7.87007 8.19080 8.36969 8.60443 9.04902 9.63450 11.10133 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057455 B = 0.009517 C = 0.008867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.224599 B = 2941.390395 C = 3157.108029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.202 3.798 3 H 0.000 1.000 4 C -0.502 4.502 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.503 5.503 13 C 0.053 3.947 14 C -0.115 4.115 15 C 0.106 3.894 16 C -0.166 4.166 17 N -0.838 5.838 18 C 0.046 3.954 19 H 0.033 0.967 20 H 0.084 0.916 21 H 0.005 0.995 22 H 0.260 0.740 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.335 0.665 31 H 0.336 0.664 32 H 0.043 0.957 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.723 -2.248 -10.940 11.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.096 3.904 3 H 0.018 0.982 4 C -0.540 4.540 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.228 5.228 13 C -0.076 4.076 14 C -0.153 4.153 15 C 0.013 3.987 16 C -0.226 4.226 17 N -0.367 5.367 18 C -0.084 4.084 19 H 0.052 0.948 20 H 0.103 0.897 21 H 0.024 0.976 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.062 0.938 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.666 -2.297 -10.084 10.681 hybrid contribution 0.163 -0.170 0.104 0.257 sum 2.829 -2.467 -9.981 10.663 Atomic orbital electron populations 1.21772 0.97697 0.99501 0.99814 1.19422 0.92507 0.92124 0.86390 0.98193 1.21080 1.30950 1.12232 0.89788 0.92118 1.24939 0.95253 0.95091 0.99008 1.69888 1.36955 1.23056 1.23449 0.86580 0.79077 0.79732 0.82123 1.20355 1.21372 1.20267 1.65495 1.07284 1.47906 1.02129 1.22775 0.90469 1.00570 0.93792 1.22442 0.96644 1.00066 0.96155 1.21607 0.95417 0.88957 0.92716 1.22502 0.99966 1.00119 0.99976 1.59021 1.17205 1.34549 1.25887 1.23030 0.97239 0.96883 0.91210 0.94798 0.89715 0.97588 0.92973 0.90739 0.94365 0.91847 0.91530 0.93508 0.91093 0.93283 0.85319 0.85142 0.93839 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.93 37.16 0.33 -2.95 16 2 C 0.20 5.29 1.83 -68.87 -0.13 5.16 16 3 H 0.00 0.01 7.97 -51.93 -0.41 -0.40 16 4 C -0.50 -14.08 8.09 -34.44 -0.28 -14.36 16 5 H 0.06 1.70 6.95 -52.49 -0.36 1.33 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -26.01 11.32 55.43 0.63 -25.38 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 N -0.50 -11.24 5.19 -223.40 -1.16 -12.40 16 13 C 0.05 1.07 5.69 -2.18 -0.01 1.06 16 14 C -0.11 -1.86 6.43 -25.35 -0.16 -2.02 16 15 C 0.11 1.63 1.24 -130.21 -0.16 1.47 16 16 C -0.17 -2.22 8.53 37.16 0.32 -1.91 16 17 N -0.84 -11.07 8.80 1.86 0.02 -11.05 16 18 C 0.05 0.87 4.78 -2.18 -0.01 0.86 16 19 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 20 H 0.08 2.33 6.07 -51.93 -0.32 2.01 16 21 H 0.01 0.12 7.07 -51.93 -0.37 -0.25 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.07 1.55 7.42 -51.93 -0.39 1.16 16 24 H 0.04 0.84 7.97 -51.93 -0.41 0.43 16 25 H 0.06 0.95 7.71 -51.93 -0.40 0.55 16 26 H 0.07 1.01 7.95 -51.93 -0.41 0.60 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.33 3.69 9.04 -39.29 -0.36 3.34 16 31 H 0.34 3.96 9.04 -39.29 -0.36 3.61 16 32 H 0.04 0.90 7.82 -51.93 -0.41 0.49 16 33 H 0.07 1.24 7.42 -51.93 -0.39 0.86 16 LS Contribution 260.27 15.07 3.92 3.92 Total: -1.00 -29.17 260.27 -7.21 -36.39 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.40 Total: 2.99 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.20 Total: -11.14 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.52 Total: -48.82 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.17 -7.21 -36.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405852999.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.728 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds