Wall clock time and date at job start Mon Mar 30 2020 02:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46706 * 2 1 4 4 C 1.50699 * 109.47285 * 240.00340 * 2 1 3 5 5 H 1.08001 * 120.00389 * 244.90584 * 4 2 1 6 6 C 1.37876 * 120.00034 * 64.90771 * 4 2 1 7 7 N 1.31523 * 120.00131 * 195.21412 * 6 4 2 8 8 Si 1.86799 * 120.00350 * 15.21032 * 6 4 2 9 9 H 1.48499 * 109.47052 * 94.76644 * 8 6 4 10 10 H 1.48495 * 109.47459 * 214.77501 * 8 6 4 11 11 H 1.48503 * 109.46968 * 334.77144 * 8 6 4 12 12 N 1.46895 * 109.47547 * 119.99899 * 2 1 3 13 13 C 1.48533 * 111.00098 * 298.81586 * 12 2 1 14 14 C 1.54940 * 103.22873 * 200.27729 * 13 12 2 15 15 C 1.54595 * 102.92011 * 37.41277 * 14 13 12 16 16 C 1.52999 * 110.30815 * 96.96274 * 15 14 13 17 17 N 1.46901 * 110.39283 * 219.08577 * 15 14 13 18 18 C 1.47896 * 111.00324 * 181.41813 * 12 2 1 19 19 H 1.09000 * 109.47230 * 303.24340 * 1 2 3 20 20 H 1.08994 * 109.47034 * 63.24886 * 1 2 3 21 21 H 1.09006 * 109.46431 * 183.24890 * 1 2 3 22 22 H 0.96996 * 119.99826 * 179.97438 * 7 6 4 23 23 H 1.08998 * 110.66854 * 318.71196 * 13 12 2 24 24 H 1.08997 * 110.66759 * 81.67453 * 13 12 2 25 25 H 1.09000 * 110.72396 * 279.05712 * 14 13 12 26 26 H 1.08996 * 110.72462 * 155.77556 * 14 13 12 27 27 H 1.08998 * 109.46794 * 304.27960 * 16 15 14 28 28 H 1.09003 * 109.46899 * 184.28510 * 16 15 14 29 29 H 1.08995 * 109.47493 * 64.27968 * 16 15 14 30 30 H 1.00906 * 111.00175 * 297.15651 * 17 15 14 31 31 H 1.00893 * 111.00235 * 61.10731 * 17 15 14 32 32 H 1.09000 * 109.91973 * 26.49463 * 18 12 2 33 33 H 1.09000 * 110.08559 * 265.28875 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5864 -1.6323 -1.1335 6 6 1.7848 -0.1831 -2.4802 7 7 1.9485 -0.9274 -3.5521 8 14 1.2167 1.5882 -2.6510 9 1 2.3909 2.4628 -2.8989 10 1 0.2694 1.6966 -3.7894 11 1 0.5382 2.0131 -1.4003 12 7 2.0198 -0.6924 1.1994 13 6 1.5671 -0.0026 2.4344 14 6 2.5616 -0.5100 3.5088 15 6 3.8977 -0.5857 2.7347 16 6 4.7259 0.6771 2.9802 17 7 4.6557 -1.7778 3.1374 18 6 3.4978 -0.6826 1.2507 19 1 -0.3634 0.5634 0.8595 20 1 -0.3633 0.4625 -0.9176 21 1 -0.3632 -1.0261 0.0582 22 1 1.7740 -0.5566 -4.4313 23 1 1.6424 1.0788 2.3207 24 1 0.5463 -0.2916 2.6844 25 1 2.2690 -1.4957 3.8704 26 1 2.6333 0.1990 4.3335 27 1 4.1380 1.5549 2.7120 28 1 5.6285 0.6440 2.3699 29 1 5.0012 0.7321 4.0333 30 1 4.9038 -1.7357 4.1146 31 1 4.1407 -2.6205 2.9312 32 1 3.8826 0.1792 0.7055 33 1 3.8935 -1.6019 0.8189 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405853000.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:38 Heat of formation + Delta-G solvation = 4.728196 kcal Electronic energy + Delta-G solvation = -13426.920933 eV Core-core repulsion = 11294.350656 eV Total energy + Delta-G solvation = -2132.570277 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.04151 -35.07876 -32.46635 -30.52473 -28.70552 -28.60048 -25.31398 -24.55705 -21.67419 -19.38401 -19.00351 -16.72623 -15.68804 -15.54027 -14.81252 -14.03346 -13.70325 -13.06085 -12.92160 -12.44503 -12.27972 -12.04953 -11.86843 -11.81608 -11.37588 -10.87627 -10.74660 -10.51961 -10.34335 -10.25016 -10.16529 -9.50133 -9.10247 -8.45821 -8.42699 -7.40764 -6.07461 -4.01018 3.27284 3.37035 3.39279 4.42833 4.65640 4.83559 4.99467 5.15096 5.26160 5.37638 5.59992 5.72261 5.84954 6.03685 6.16965 6.18896 6.25884 6.32714 6.45227 6.48698 6.60693 6.69088 6.79321 6.90300 7.27678 7.43465 7.64951 7.68736 7.93505 8.03103 8.66542 9.04779 9.58283 11.05668 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046052 B = 0.010942 C = 0.010398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.857532 B = 2558.353995 C = 2692.076639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.178 3.822 3 H -0.006 1.006 4 C -0.509 4.509 5 H 0.079 0.921 6 C 0.075 3.925 7 N -0.892 5.892 8 Si 0.862 3.138 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.257 1.257 12 N -0.503 5.503 13 C 0.034 3.966 14 C -0.152 4.152 15 C 0.101 3.899 16 C -0.132 4.132 17 N -0.835 5.835 18 C 0.064 3.936 19 H 0.020 0.980 20 H 0.048 0.952 21 H 0.055 0.945 22 H 0.263 0.737 23 H 0.034 0.966 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.332 0.668 31 H 0.345 0.655 32 H 0.048 0.952 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.453 2.967 12.983 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.070 3.930 3 H 0.011 0.989 4 C -0.547 4.547 5 H 0.097 0.903 6 C -0.128 4.128 7 N -0.529 5.529 8 Si 0.689 3.311 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.181 1.181 12 N -0.227 5.227 13 C -0.095 4.095 14 C -0.192 4.192 15 C 0.008 3.992 16 C -0.190 4.190 17 N -0.364 5.364 18 C -0.064 4.064 19 H 0.039 0.961 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.052 0.948 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.144 0.856 31 H 0.159 0.841 32 H 0.067 0.933 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.784 2.667 12.182 12.597 hybrid contribution -0.876 1.656 0.348 1.905 sum 0.908 4.323 12.529 13.285 Atomic orbital electron populations 1.22125 0.98044 1.00667 0.98619 1.19813 0.92045 0.91997 0.89102 0.98864 1.20883 1.35794 1.09948 0.88032 0.90267 1.24883 0.94886 0.97175 0.95815 1.69974 1.49309 1.35371 0.98273 0.87211 0.78873 0.86818 0.78228 1.20809 1.21245 1.18093 1.64773 1.06814 1.49706 1.01447 1.23124 0.98612 0.96246 0.91499 1.23333 0.96839 1.01136 0.97863 1.21786 0.90680 0.90713 0.96056 1.21795 1.00191 0.96075 1.00941 1.58880 1.49167 1.04209 1.24170 1.22670 0.89099 1.02482 0.92167 0.96090 0.93344 0.92617 0.92731 0.94815 0.90982 0.91380 0.91931 0.92455 0.91778 0.93220 0.85609 0.84114 0.93341 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.31 37.16 0.31 -2.77 16 2 C 0.18 4.30 1.28 -68.87 -0.09 4.22 16 3 H -0.01 -0.15 6.59 -51.93 -0.34 -0.49 16 4 C -0.51 -14.40 8.48 -34.44 -0.29 -14.70 16 5 H 0.08 2.47 7.75 -52.49 -0.41 2.06 16 6 C 0.07 2.16 5.34 -17.82 -0.10 2.06 16 7 N -0.89 -27.32 13.96 55.43 0.77 -26.55 16 8 Si 0.86 21.38 25.78 -169.99 -4.38 17.00 16 9 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.03 5.48 56.52 0.31 -5.72 16 12 N -0.50 -10.61 5.10 -223.89 -1.14 -11.75 16 13 C 0.03 0.59 5.48 -1.90 -0.01 0.58 16 14 C -0.15 -2.16 6.32 -24.87 -0.16 -2.32 16 15 C 0.10 1.53 1.19 -130.24 -0.16 1.38 16 16 C -0.13 -1.81 8.50 37.16 0.32 -1.50 16 17 N -0.84 -11.28 8.82 1.83 0.02 -11.26 16 18 C 0.06 1.27 5.18 -2.76 -0.01 1.26 16 19 H 0.02 0.40 7.13 -51.93 -0.37 0.03 16 20 H 0.05 1.12 4.99 -51.93 -0.26 0.86 16 21 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 22 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.03 0.59 7.98 -51.93 -0.41 0.17 16 24 H 0.07 1.20 7.73 -51.93 -0.40 0.80 16 25 H 0.07 0.93 8.04 -51.93 -0.42 0.52 16 26 H 0.06 0.78 7.85 -51.93 -0.41 0.37 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.33 3.67 9.04 -39.29 -0.36 3.32 16 31 H 0.35 4.65 8.95 -39.30 -0.35 4.30 16 32 H 0.05 1.03 7.25 -51.93 -0.38 0.66 16 33 H 0.08 1.76 7.79 -51.93 -0.40 1.36 16 LS Contribution 255.41 15.07 3.85 3.85 Total: -1.00 -29.95 255.41 -6.50 -36.45 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.43 Total: 4.05 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -0.19 Total: -11.79 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.35 Total: -49.56 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.38 Total: 17.00 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.95 -6.50 -36.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405853000.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.179 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds