Wall clock time and date at job start Mon Mar 30 2020 02:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46706 * 2 1 4 4 C 1.50699 * 109.47285 * 240.00340 * 2 1 3 5 5 H 1.08001 * 120.00389 * 244.90584 * 4 2 1 6 6 C 1.37876 * 120.00034 * 64.90771 * 4 2 1 7 7 N 1.31523 * 120.00131 * 195.21412 * 6 4 2 8 8 Si 1.86799 * 120.00350 * 15.21032 * 6 4 2 9 9 H 1.48499 * 109.47052 * 94.76644 * 8 6 4 10 10 H 1.48495 * 109.47459 * 214.77501 * 8 6 4 11 11 H 1.48503 * 109.46968 * 334.77144 * 8 6 4 12 12 N 1.46895 * 109.47547 * 119.99899 * 2 1 3 13 13 C 1.48533 * 111.00098 * 298.81586 * 12 2 1 14 14 C 1.54940 * 103.22873 * 200.27729 * 13 12 2 15 15 C 1.54595 * 102.92011 * 37.41277 * 14 13 12 16 16 C 1.52999 * 110.30815 * 96.96274 * 15 14 13 17 17 N 1.46901 * 110.39283 * 219.08577 * 15 14 13 18 18 C 1.47896 * 111.00324 * 181.41813 * 12 2 1 19 19 H 1.09000 * 109.47230 * 303.24340 * 1 2 3 20 20 H 1.08994 * 109.47034 * 63.24886 * 1 2 3 21 21 H 1.09006 * 109.46431 * 183.24890 * 1 2 3 22 22 H 0.96996 * 119.99826 * 179.97438 * 7 6 4 23 23 H 1.08998 * 110.66854 * 318.71196 * 13 12 2 24 24 H 1.08997 * 110.66759 * 81.67453 * 13 12 2 25 25 H 1.09000 * 110.72396 * 279.05712 * 14 13 12 26 26 H 1.08996 * 110.72462 * 155.77556 * 14 13 12 27 27 H 1.08998 * 109.46794 * 304.27960 * 16 15 14 28 28 H 1.09003 * 109.46899 * 184.28510 * 16 15 14 29 29 H 1.08995 * 109.47493 * 64.27968 * 16 15 14 30 30 H 1.00906 * 111.00175 * 297.15651 * 17 15 14 31 31 H 1.00893 * 111.00235 * 61.10731 * 17 15 14 32 32 H 1.09000 * 109.91973 * 26.49463 * 18 12 2 33 33 H 1.09000 * 110.08559 * 265.28875 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5864 -1.6323 -1.1335 6 6 1.7848 -0.1831 -2.4802 7 7 1.9485 -0.9274 -3.5521 8 14 1.2167 1.5882 -2.6510 9 1 2.3909 2.4628 -2.8989 10 1 0.2694 1.6966 -3.7894 11 1 0.5382 2.0131 -1.4003 12 7 2.0198 -0.6924 1.1994 13 6 1.5671 -0.0026 2.4344 14 6 2.5616 -0.5100 3.5088 15 6 3.8977 -0.5857 2.7347 16 6 4.7259 0.6771 2.9802 17 7 4.6557 -1.7778 3.1374 18 6 3.4978 -0.6826 1.2507 19 1 -0.3634 0.5634 0.8595 20 1 -0.3633 0.4625 -0.9176 21 1 -0.3632 -1.0261 0.0582 22 1 1.7740 -0.5566 -4.4313 23 1 1.6424 1.0788 2.3207 24 1 0.5463 -0.2916 2.6844 25 1 2.2690 -1.4957 3.8704 26 1 2.6333 0.1990 4.3335 27 1 4.1380 1.5549 2.7120 28 1 5.6285 0.6440 2.3699 29 1 5.0012 0.7321 4.0333 30 1 4.9038 -1.7357 4.1146 31 1 4.1407 -2.6205 2.9312 32 1 3.8826 0.1792 0.7055 33 1 3.8935 -1.6019 0.8189 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405853000.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:37 Heat of formation + Delta-G solvation = -19.432119 kcal Electronic energy + Delta-G solvation = -13427.968603 eV Core-core repulsion = 11294.350656 eV Total energy + Delta-G solvation = -2133.617947 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.46893 -36.70350 -34.42733 -32.19349 -30.12784 -29.84526 -27.22249 -26.12764 -23.24262 -21.16363 -20.28922 -18.81863 -17.15567 -16.95790 -16.44961 -15.60317 -15.19023 -14.84214 -14.46764 -14.20711 -13.78805 -13.50288 -13.44603 -13.08168 -12.84378 -12.54836 -12.48190 -12.07761 -12.04617 -11.79124 -11.62215 -11.41175 -11.15562 -10.65274 -9.53177 -9.08300 -8.31251 -6.29793 1.30475 1.34136 1.44080 2.32816 3.01661 3.28764 3.56950 3.71196 3.90691 4.15273 4.38049 4.45919 4.53540 4.69227 4.75126 4.79730 4.84429 4.92726 5.00531 5.04605 5.07469 5.12363 5.18632 5.36695 5.45112 5.71579 6.01470 6.23190 6.32296 6.65811 6.71599 6.74987 7.33624 8.85957 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046052 B = 0.010942 C = 0.010398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.857532 B = 2558.353995 C = 2692.076639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.181 3.819 3 H -0.010 1.010 4 C -0.513 4.513 5 H 0.031 0.969 6 C 0.017 3.983 7 N -0.942 5.942 8 Si 0.929 3.071 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.231 1.231 12 N -0.520 5.520 13 C 0.030 3.970 14 C -0.138 4.138 15 C 0.109 3.891 16 C -0.129 4.129 17 N -0.839 5.839 18 C 0.065 3.935 19 H 0.055 0.945 20 H 0.041 0.959 21 H 0.046 0.954 22 H 0.266 0.734 23 H 0.038 0.962 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.351 0.649 31 H 0.345 0.655 32 H 0.024 0.976 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 4.720 15.534 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.073 3.927 3 H 0.008 0.992 4 C -0.551 4.551 5 H 0.049 0.951 6 C -0.181 4.181 7 N -0.581 5.581 8 Si 0.752 3.248 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.154 1.154 12 N -0.245 5.245 13 C -0.098 4.098 14 C -0.178 4.178 15 C 0.015 3.985 16 C -0.187 4.187 17 N -0.370 5.370 18 C -0.064 4.064 19 H 0.074 0.926 20 H 0.059 0.941 21 H 0.066 0.934 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.042 0.958 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.087 4.418 14.778 15.463 hybrid contribution -0.595 0.986 -0.434 1.230 sum 0.492 5.404 14.344 15.336 Atomic orbital electron populations 1.22016 0.96406 1.00765 0.99783 1.19660 0.93174 0.91206 0.88686 0.99220 1.21092 1.35049 1.08535 0.90400 0.95106 1.25760 0.95289 1.01798 0.95263 1.70117 1.51351 1.37674 0.98998 0.86130 0.78674 0.80646 0.79307 1.20501 1.20736 1.15360 1.64640 1.07533 1.50313 1.01997 1.23261 0.99980 0.96275 0.90326 1.23291 0.94638 1.02353 0.97516 1.21639 0.91971 0.92109 0.92752 1.21774 0.99348 0.94937 1.02651 1.58783 1.48915 1.03575 1.25701 1.22596 0.88556 0.99749 0.95514 0.92609 0.94053 0.93437 0.92545 0.94414 0.89933 0.90574 0.88765 0.92616 0.92884 0.90207 0.83475 0.84176 0.95758 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.31 71.98 0.60 -5.09 16 2 C 0.18 8.69 1.28 44.17 0.06 8.74 16 3 H -0.01 -0.46 6.59 -2.39 -0.02 -0.48 16 4 C -0.51 -30.06 8.48 25.60 0.22 -29.85 16 5 H 0.03 2.04 7.75 -2.91 -0.02 2.02 16 6 C 0.02 0.99 5.34 84.65 0.45 1.44 16 7 N -0.94 -59.73 13.96 21.45 0.30 -59.43 16 8 Si 0.93 44.17 25.78 68.60 1.77 45.93 16 9 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.23 -9.93 5.48 99.48 0.54 -9.39 16 12 N -0.52 -21.72 5.10 -862.26 -4.40 -26.11 16 13 C 0.03 0.94 5.48 86.65 0.47 1.41 16 14 C -0.14 -3.43 6.32 31.80 0.20 -3.23 16 15 C 0.11 3.10 1.19 4.41 0.01 3.10 16 16 C -0.13 -3.20 8.50 71.98 0.61 -2.59 16 17 N -0.84 -21.12 8.82 -148.11 -1.31 -22.43 16 18 C 0.06 2.59 5.18 86.45 0.45 3.04 16 19 H 0.06 2.00 7.13 -2.39 -0.02 1.98 16 20 H 0.04 1.81 4.99 -2.39 -0.01 1.80 16 21 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 22 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 23 H 0.04 1.18 7.98 -2.39 -0.02 1.16 16 24 H 0.08 2.44 7.73 -2.39 -0.02 2.43 16 25 H 0.08 1.80 8.04 -2.39 -0.02 1.78 16 26 H 0.09 1.82 7.85 -2.39 -0.02 1.81 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.35 6.66 9.04 -89.69 -0.81 5.85 16 31 H 0.34 8.90 8.95 -89.70 -0.80 8.10 16 32 H 0.02 1.06 7.25 -2.39 -0.02 1.05 16 33 H 0.05 2.28 7.79 -2.39 -0.02 2.26 16 Total: -1.00 -66.93 255.41 -1.25 -68.18 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -0.68 Total: 16.87 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 3.06 Total: -23.01 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -5.40 Total: -107.97 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.77 Total: 45.93 kcal Total: -66.93 -1.25 -68.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405853000.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.748 kcal (2) G-P(sol) polarization free energy of solvation -66.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds