Wall clock time and date at job start Mon Mar 30 2020 02:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.45940 * 2 1 4 4 C 1.53028 * 109.46677 * 119.98331 * 2 1 3 5 5 C 1.53116 * 109.28018 * 179.20000 * 4 2 1 6 6 C 1.53120 * 109.15870 * 302.34108 * 5 4 2 7 7 H 1.09003 * 109.50477 * 177.59680 * 6 5 4 8 8 N 1.46894 * 109.50575 * 297.71500 * 6 5 4 9 9 C 1.53035 * 109.27829 * 57.65843 * 6 5 4 10 10 N 1.46846 * 109.52058 * 300.81826 * 9 6 5 11 11 C 1.46907 * 111.00244 * 185.83841 * 10 9 6 12 12 C 1.50698 * 109.47042 * 67.39636 * 11 10 9 13 13 H 1.08007 * 119.99873 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00011 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99867 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99743 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47319 * 89.99941 * 16 14 12 18 18 H 1.48506 * 109.46796 * 210.00108 * 16 14 12 19 19 H 1.48502 * 109.47238 * 329.99541 * 16 14 12 20 20 H 1.08996 * 109.47021 * 293.03632 * 1 2 3 21 21 H 1.09003 * 109.47445 * 53.04120 * 1 2 3 22 22 H 1.09007 * 109.46955 * 173.04374 * 1 2 3 23 23 H 1.09003 * 109.50145 * 299.13291 * 4 2 1 24 24 H 1.09000 * 109.50923 * 59.25166 * 4 2 1 25 25 H 1.09002 * 109.52965 * 62.24789 * 5 4 2 26 26 H 1.09001 * 109.52690 * 182.43830 * 5 4 2 27 27 H 1.00901 * 111.00069 * 299.80085 * 8 6 5 28 28 H 1.00899 * 110.99914 * 63.75403 * 8 6 5 29 29 H 1.08998 * 109.46848 * 180.80638 * 9 6 5 30 30 H 1.08999 * 109.46343 * 60.83426 * 9 6 5 31 31 H 1.08997 * 109.47405 * 187.40246 * 11 10 9 32 32 H 1.09003 * 109.46807 * 307.39727 * 11 10 9 33 33 H 0.96997 * 119.99737 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 1.2497 5 6 3.5710 -0.7360 1.2353 6 6 4.0548 -1.4186 -0.0471 7 1 5.1440 -1.3944 -0.0835 8 7 3.5936 -2.8132 -0.0645 9 6 3.4865 -0.6773 -1.2593 10 7 2.0193 -0.6915 -1.1996 11 6 1.4372 -0.1101 -2.4166 12 6 1.7281 -1.0084 -3.5912 13 1 2.2890 -1.9202 -3.4478 14 6 1.2783 -0.6662 -4.8488 15 7 0.5949 0.4438 -5.0232 16 14 1.6383 -1.7800 -6.3045 17 1 0.5419 -2.7704 -6.4532 18 1 1.7380 -0.9626 -7.5404 19 1 2.9214 -2.4923 -6.0774 20 1 -0.3633 0.4021 0.9457 21 1 -0.3634 0.6179 -0.8212 22 1 -0.3633 -1.0202 -0.1245 23 1 1.6896 -0.1984 2.1398 24 1 1.6660 -1.7449 1.2573 25 1 3.9457 0.2870 1.2671 26 1 3.9381 -1.2864 2.1016 27 1 3.9560 -3.3238 0.7268 28 1 2.5862 -2.8605 -0.0947 29 1 3.8174 -1.1693 -2.1739 30 1 3.8403 0.3536 -1.2532 31 1 0.3587 -0.0120 -2.2926 32 1 1.8733 0.8729 -2.5942 33 1 0.2788 0.6847 -5.9080 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575484562.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:00 Heat of formation + Delta-G solvation = -7.455825 kcal Electronic energy + Delta-G solvation = -13445.468127 eV Core-core repulsion = 11312.369511 eV Total energy + Delta-G solvation = -2133.098615 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.93407 -34.48351 -32.84597 -31.52765 -29.25210 -27.04712 -25.67362 -23.73581 -21.50629 -20.32627 -18.51096 -16.25523 -15.96150 -14.83566 -14.59714 -14.14535 -13.89754 -13.63468 -13.19114 -12.49436 -12.29201 -11.75035 -11.48418 -11.37944 -11.13103 -10.99689 -10.74186 -10.66682 -10.32869 -10.11623 -10.00612 -9.37145 -9.09627 -8.34447 -8.16159 -7.15277 -5.96241 -3.96122 3.37379 3.42926 3.48268 4.48374 4.83684 5.09771 5.16830 5.19760 5.37796 5.39663 5.67155 5.82220 5.88157 5.99689 6.09611 6.13260 6.16915 6.30816 6.38739 6.51237 6.65153 6.80562 6.88128 7.38746 7.40904 7.69792 7.90061 8.02961 8.18397 8.28811 8.64374 9.13068 9.67709 11.14698 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042586 B = 0.010913 C = 0.009389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.340926 B = 2565.093053 C = 2981.346000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 H 0.026 0.974 4 C -0.110 4.110 5 C -0.155 4.155 6 C 0.094 3.906 7 H 0.071 0.929 8 N -0.834 5.834 9 C 0.070 3.930 10 N -0.527 5.527 11 C 0.189 3.811 12 C -0.502 4.502 13 H 0.066 0.934 14 C 0.053 3.947 15 N -0.902 5.902 16 Si 0.897 3.103 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.273 1.273 20 H 0.044 0.956 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.323 0.677 28 H 0.354 0.646 29 H 0.090 0.910 30 H 0.020 0.980 31 H 0.039 0.961 32 H -0.013 1.013 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.459 -1.755 11.211 11.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 H 0.043 0.957 4 C -0.148 4.148 5 C -0.195 4.195 6 C -0.018 4.018 7 H 0.089 0.911 8 N -0.364 5.364 9 C -0.058 4.058 10 N -0.253 5.253 11 C 0.064 3.936 12 C -0.540 4.540 13 H 0.084 0.916 14 C -0.147 4.147 15 N -0.542 5.542 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.198 1.198 20 H 0.063 0.937 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.134 0.866 28 H 0.170 0.830 29 H 0.109 0.891 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.004 0.996 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.599 -2.190 10.384 11.206 hybrid contribution -0.065 0.699 0.036 0.703 sum 3.534 -1.491 10.420 11.103 Atomic orbital electron populations 1.21866 0.94898 1.02657 1.00607 1.21542 0.95254 0.94888 0.91510 0.95655 1.21612 0.94961 1.01021 0.97196 1.22422 0.96769 1.01269 0.99043 1.21503 0.98173 0.88491 0.93642 0.91084 1.58810 1.17458 1.11858 1.48315 1.21976 0.88968 0.96799 0.98080 1.62025 1.05753 1.54719 1.02756 1.19807 0.95423 0.93089 0.85273 1.21223 1.34123 1.07231 0.91464 0.91603 1.24983 0.95453 0.95339 0.98959 1.69963 1.37865 1.23567 1.22798 0.86513 0.78789 0.80429 0.81776 1.20734 1.21506 1.19801 0.93665 0.91865 0.91942 0.92544 0.91739 0.92276 0.92799 0.86563 0.82959 0.89131 0.96235 0.94346 0.99557 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.55 37.16 0.32 -2.15 16 2 C 0.08 1.39 2.44 -67.73 -0.17 1.23 16 3 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.11 -1.61 5.04 -26.66 -0.13 -1.74 16 5 C -0.16 -2.15 5.67 -26.61 -0.15 -2.31 16 6 C 0.09 1.50 3.71 -67.64 -0.25 1.25 16 7 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 8 N -0.83 -13.09 9.18 -4.60 -0.04 -13.13 16 9 C 0.07 1.41 4.96 -3.84 -0.02 1.39 16 10 N -0.53 -11.21 3.77 -228.13 -0.86 -12.08 16 11 C 0.19 4.93 4.47 -4.97 -0.02 4.91 16 12 C -0.50 -14.24 8.44 -34.44 -0.29 -14.53 16 13 H 0.07 1.88 7.23 -52.48 -0.38 1.50 16 14 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 15 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 16 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.06 1.21 6.50 -51.93 -0.34 0.88 16 22 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.94 6.90 -51.93 -0.36 0.58 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.32 4.15 9.04 -39.29 -0.36 3.80 16 28 H 0.35 5.99 6.76 -39.29 -0.27 5.72 16 29 H 0.09 2.04 6.81 -51.93 -0.35 1.69 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 1.05 5.73 -51.93 -0.30 0.76 16 32 H -0.01 -0.38 8.11 -51.93 -0.42 -0.80 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 256.36 15.07 3.86 3.86 Total: -1.00 -29.39 256.36 -7.42 -36.81 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.28 Total: 4.31 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.81 Total: -10.52 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.17 Total: -51.55 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.39 -7.42 -36.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575484562.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.359 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds