Wall clock time and date at job start Mon Mar 30 2020 02:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.45940 * 2 1 4 4 C 1.53028 * 109.46677 * 119.98331 * 2 1 3 5 5 C 1.53116 * 109.28018 * 179.20000 * 4 2 1 6 6 C 1.53120 * 109.15870 * 302.34108 * 5 4 2 7 7 H 1.09003 * 109.50477 * 177.59680 * 6 5 4 8 8 N 1.46894 * 109.50575 * 297.71500 * 6 5 4 9 9 C 1.53035 * 109.27829 * 57.65843 * 6 5 4 10 10 N 1.46846 * 109.52058 * 300.81826 * 9 6 5 11 11 C 1.46907 * 111.00244 * 185.83841 * 10 9 6 12 12 C 1.50698 * 109.47042 * 67.39636 * 11 10 9 13 13 H 1.08007 * 119.99873 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00011 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99867 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99743 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47319 * 89.99941 * 16 14 12 18 18 H 1.48506 * 109.46796 * 210.00108 * 16 14 12 19 19 H 1.48502 * 109.47238 * 329.99541 * 16 14 12 20 20 H 1.08996 * 109.47021 * 293.03632 * 1 2 3 21 21 H 1.09003 * 109.47445 * 53.04120 * 1 2 3 22 22 H 1.09007 * 109.46955 * 173.04374 * 1 2 3 23 23 H 1.09003 * 109.50145 * 299.13291 * 4 2 1 24 24 H 1.09000 * 109.50923 * 59.25166 * 4 2 1 25 25 H 1.09002 * 109.52965 * 62.24789 * 5 4 2 26 26 H 1.09001 * 109.52690 * 182.43830 * 5 4 2 27 27 H 1.00901 * 111.00069 * 299.80085 * 8 6 5 28 28 H 1.00899 * 110.99914 * 63.75403 * 8 6 5 29 29 H 1.08998 * 109.46848 * 180.80638 * 9 6 5 30 30 H 1.08999 * 109.46343 * 60.83426 * 9 6 5 31 31 H 1.08997 * 109.47405 * 187.40246 * 11 10 9 32 32 H 1.09003 * 109.46807 * 307.39727 * 11 10 9 33 33 H 0.96997 * 119.99737 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 1.2497 5 6 3.5710 -0.7360 1.2353 6 6 4.0548 -1.4186 -0.0471 7 1 5.1440 -1.3944 -0.0835 8 7 3.5936 -2.8132 -0.0645 9 6 3.4865 -0.6773 -1.2593 10 7 2.0193 -0.6915 -1.1996 11 6 1.4372 -0.1101 -2.4166 12 6 1.7281 -1.0084 -3.5912 13 1 2.2890 -1.9202 -3.4478 14 6 1.2783 -0.6662 -4.8488 15 7 0.5949 0.4438 -5.0232 16 14 1.6383 -1.7800 -6.3045 17 1 0.5419 -2.7704 -6.4532 18 1 1.7380 -0.9626 -7.5404 19 1 2.9214 -2.4923 -6.0774 20 1 -0.3633 0.4021 0.9457 21 1 -0.3634 0.6179 -0.8212 22 1 -0.3633 -1.0202 -0.1245 23 1 1.6896 -0.1984 2.1398 24 1 1.6660 -1.7449 1.2573 25 1 3.9457 0.2870 1.2671 26 1 3.9381 -1.2864 2.1016 27 1 3.9560 -3.3238 0.7268 28 1 2.5862 -2.8605 -0.0947 29 1 3.8174 -1.1693 -2.1739 30 1 3.8403 0.3536 -1.2532 31 1 0.3587 -0.0120 -2.2926 32 1 1.8733 0.8729 -2.5942 33 1 0.2788 0.6847 -5.9080 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575484562.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:00 Heat of formation + Delta-G solvation = -28.936159 kcal Electronic energy + Delta-G solvation = -13446.399584 eV Core-core repulsion = 11312.369511 eV Total energy + Delta-G solvation = -2134.030073 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.40331 -36.08301 -34.70617 -33.23620 -30.55677 -29.00602 -27.18507 -25.44280 -23.20095 -21.85011 -19.91781 -18.44781 -17.39032 -16.49992 -16.29725 -15.74633 -15.27034 -15.03470 -14.72760 -14.16673 -13.97499 -13.55752 -13.11467 -12.76781 -12.74873 -12.66109 -12.44599 -12.29876 -12.04157 -11.74654 -11.62181 -11.13409 -10.91291 -10.54115 -9.39258 -8.92851 -8.18251 -6.26733 1.40565 1.41921 1.53581 2.41607 3.13650 3.27229 3.79781 3.90815 3.95635 4.13265 4.29770 4.45501 4.53645 4.69232 4.72188 4.79283 4.95002 5.02938 5.03970 5.07358 5.21309 5.28413 5.32440 5.41744 5.45115 5.69973 6.11362 6.37598 6.49013 6.74032 6.87861 6.90717 7.42316 8.92620 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042586 B = 0.010913 C = 0.009389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.340926 B = 2565.093053 C = 2981.346000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.070 3.930 3 H 0.014 0.986 4 C -0.102 4.102 5 C -0.148 4.148 6 C 0.102 3.898 7 H 0.086 0.914 8 N -0.843 5.843 9 C 0.070 3.930 10 N -0.526 5.526 11 C 0.204 3.796 12 C -0.516 4.516 13 H 0.060 0.940 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.267 1.267 20 H 0.081 0.919 21 H 0.031 0.969 22 H 0.057 0.943 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.344 0.656 28 H 0.348 0.652 29 H 0.056 0.944 30 H 0.010 0.990 31 H 0.020 0.980 32 H -0.051 1.051 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.125 -2.952 12.748 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.039 4.039 3 H 0.032 0.968 4 C -0.139 4.139 5 C -0.188 4.188 6 C -0.011 4.011 7 H 0.104 0.896 8 N -0.375 5.375 9 C -0.059 4.059 10 N -0.251 5.251 11 C 0.078 3.922 12 C -0.555 4.555 13 H 0.078 0.922 14 C -0.197 4.197 15 N -0.577 5.577 16 Si 0.792 3.208 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.192 1.192 20 H 0.099 0.901 21 H 0.051 0.949 22 H 0.076 0.924 23 H 0.103 0.897 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.157 0.843 28 H 0.163 0.837 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.038 0.962 32 H -0.033 1.033 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.283 -3.399 11.954 13.146 hybrid contribution -0.272 1.107 -0.412 1.212 sum 4.010 -2.293 11.543 12.433 Atomic orbital electron populations 1.21816 0.94441 1.01923 1.01312 1.21755 0.95785 0.94628 0.91702 0.96796 1.21576 0.95553 1.01017 0.95803 1.22364 0.96038 1.01633 0.98728 1.21398 0.98692 0.88388 0.92582 0.89608 1.58734 1.17012 1.11921 1.49820 1.21969 0.88200 0.96657 0.99084 1.61967 1.06535 1.54505 1.02107 1.19455 0.94304 0.91173 0.87305 1.21481 1.34043 1.07264 0.92682 0.92194 1.25876 0.95104 0.96790 1.01944 1.70087 1.38744 1.25231 1.23641 0.85420 0.78885 0.78503 0.78029 1.19790 1.20825 1.19182 0.90052 0.94939 0.92416 0.89738 0.91267 0.92056 0.89554 0.84310 0.83739 0.92511 0.97136 0.96154 1.03291 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 8.55 71.98 0.62 -4.07 16 2 C 0.07 2.48 2.44 44.93 0.11 2.59 16 3 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 4 C -0.10 -2.65 5.04 30.64 0.15 -2.50 16 5 C -0.15 -3.58 5.67 30.67 0.17 -3.41 16 6 C 0.10 3.03 3.71 44.97 0.17 3.20 16 7 H 0.09 2.33 8.14 -2.39 -0.02 2.32 16 8 N -0.84 -24.62 9.18 -168.47 -1.55 -26.17 16 9 C 0.07 2.82 4.96 86.33 0.43 3.24 16 10 N -0.53 -22.80 3.77 -875.65 -3.30 -26.10 16 11 C 0.20 11.14 4.47 85.56 0.38 11.52 16 12 C -0.52 -30.21 8.44 25.60 0.22 -30.00 16 13 H 0.06 3.51 7.23 -2.91 -0.02 3.49 16 14 C 0.00 0.02 5.46 84.65 0.46 0.48 16 15 N -0.94 -57.66 13.29 21.45 0.28 -57.38 16 16 Si 0.97 45.86 29.54 68.60 2.03 47.88 16 17 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 21 H 0.03 1.28 6.50 -2.39 -0.02 1.26 16 22 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 23 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.07 1.78 6.90 -2.39 -0.02 1.77 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.34 7.69 9.04 -89.69 -0.81 6.87 16 28 H 0.35 11.12 6.76 -89.69 -0.61 10.51 16 29 H 0.06 2.65 6.81 -2.39 -0.02 2.63 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.02 1.18 5.73 -2.39 -0.01 1.17 16 32 H -0.05 -3.07 8.11 -2.39 -0.02 -3.09 16 33 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -65.01 256.36 -0.15 -65.17 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -0.32 Total: 15.53 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 2.71 Total: -18.94 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -4.57 Total: -109.64 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -65.01 -0.15 -65.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575484562.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.233 kcal (2) G-P(sol) polarization free energy of solvation -65.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds