Wall clock time and date at job start Mon Mar 30 2020 01:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47844 * 110.99982 * 2 1 4 4 C 1.55380 * 104.83918 * 146.36889 * 3 2 1 5 5 H 1.08996 * 111.00619 * 80.94186 * 4 3 2 6 6 N 1.46497 * 111.17466 * 204.90382 * 4 3 2 7 7 C 1.36933 * 120.00127 * 267.11385 * 6 4 3 8 8 H 1.08003 * 120.00080 * 359.97438 * 7 6 4 9 9 C 1.38816 * 120.00217 * 180.02562 * 7 6 4 10 10 N 1.31614 * 119.99817 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47310 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47294 * 119.99912 * 11 9 7 14 14 H 1.48492 * 109.47114 * 239.99850 * 11 9 7 15 15 C 1.55142 * 101.43737 * 322.95685 * 4 3 2 16 16 C 1.47443 * 111.00227 * 120.84156 * 2 1 3 17 17 C 1.53004 * 109.88444 * 117.33702 * 16 2 1 18 18 C 1.53000 * 110.02143 * 356.22708 * 16 2 1 19 19 H 1.09002 * 109.46844 * 299.15569 * 1 2 3 20 20 H 1.09002 * 109.47255 * 59.14950 * 1 2 3 21 21 H 1.08998 * 109.47076 * 179.15772 * 1 2 3 22 22 H 1.08999 * 110.37744 * 265.19940 * 3 2 1 23 23 H 1.09007 * 110.37325 * 27.42750 * 3 2 1 24 24 H 0.97006 * 120.00366 * 87.10790 * 6 4 3 25 25 H 0.97003 * 119.99823 * 180.02562 * 10 9 7 26 26 H 1.09002 * 110.70816 * 277.17375 * 15 4 3 27 27 H 1.09005 * 110.70106 * 154.11515 * 15 4 3 28 28 H 1.08999 * 109.46667 * 177.77254 * 17 16 2 29 29 H 1.09000 * 109.47014 * 297.77064 * 17 16 2 30 30 H 1.08996 * 109.47138 * 57.76907 * 17 16 2 31 31 H 1.08993 * 109.47205 * 302.14480 * 18 16 2 32 32 H 1.09003 * 109.47391 * 62.14402 * 18 16 2 33 33 H 1.08997 * 109.46993 * 182.14700 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3089 1.3036 0.8319 5 1 4.1343 0.9281 0.2271 6 7 3.6402 2.6045 1.4184 7 6 4.4728 3.4638 0.7524 8 1 4.8855 3.1823 -0.2052 9 6 4.7871 4.6963 1.3083 10 7 4.2846 5.0391 2.4754 11 14 5.9234 5.8682 0.4000 12 1 6.3496 5.2507 -0.8815 13 1 5.2056 7.1381 0.1223 14 1 7.1179 6.1476 1.2368 15 6 2.9159 0.2822 1.9314 16 6 1.9974 -0.7057 1.1818 17 6 2.8008 -1.9307 0.7404 18 6 0.8461 -1.1387 2.0916 19 1 -0.3633 0.5007 0.8975 20 1 -0.3634 0.5270 -0.8823 21 1 -0.3633 -1.0275 -0.0151 22 1 2.2147 1.7039 -1.0182 23 1 1.2880 2.0596 0.4707 24 1 3.2698 2.8573 2.2785 25 1 4.5040 5.9005 2.8638 26 1 2.3744 0.7746 2.7392 27 1 3.7986 -0.2285 2.3163 28 1 3.2210 -2.4246 1.6165 29 1 2.1459 -2.6235 0.2119 30 1 3.6077 -1.6168 0.0782 31 1 0.2676 -0.2635 2.3871 32 1 0.2019 -1.8359 1.5557 33 1 1.2484 -1.6253 2.9801 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575530489.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:40 Heat of formation + Delta-G solvation = -4.870545 kcal Electronic energy + Delta-G solvation = -13230.444935 eV Core-core repulsion = 11097.458426 eV Total energy + Delta-G solvation = -2132.986509 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.70612 -36.40975 -33.59238 -33.25180 -30.63883 -28.28839 -26.43819 -26.02258 -24.72842 -21.71820 -19.66763 -19.24917 -17.03272 -16.75362 -16.05557 -15.67473 -15.26699 -14.55802 -14.44813 -14.17701 -13.92850 -13.48976 -13.01406 -12.97417 -12.70634 -12.38924 -12.31267 -12.19237 -12.08586 -11.99573 -11.83359 -11.63553 -11.28830 -10.96015 -9.29115 -8.99540 -7.97835 -5.27529 1.46584 1.47131 1.57650 2.53042 3.03172 3.34344 3.70249 3.88547 4.03333 4.19492 4.32792 4.41393 4.46922 4.58979 4.62778 4.70809 4.83435 4.92865 4.96800 5.02505 5.08197 5.13260 5.24714 5.26180 5.31797 5.49145 5.56852 6.08923 6.24787 6.28577 7.29906 8.03363 8.27805 9.25742 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060035 B = 0.008333 C = 0.008219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.279634 B = 3359.451593 C = 3405.930091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.529 5.529 3 C 0.032 3.968 4 C 0.166 3.834 5 H 0.056 0.944 6 N -0.729 5.729 7 C -0.243 4.243 8 H 0.076 0.924 9 C -0.075 4.075 10 N -0.970 5.970 11 Si 0.974 3.026 12 H -0.266 1.266 13 H -0.293 1.293 14 H -0.292 1.292 15 C -0.134 4.134 16 C 0.091 3.909 17 C -0.120 4.120 18 C -0.154 4.154 19 H 0.026 0.974 20 H 0.061 0.939 21 H 0.088 0.912 22 H 0.060 0.940 23 H 0.026 0.974 24 H 0.373 0.627 25 H 0.252 0.748 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.331 -13.133 -2.738 14.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.253 5.253 3 C -0.099 4.099 4 C 0.056 3.944 5 H 0.075 0.925 6 N -0.368 5.368 7 C -0.375 4.375 8 H 0.094 0.906 9 C -0.267 4.267 10 N -0.620 5.620 11 Si 0.803 3.197 12 H -0.190 1.190 13 H -0.220 1.220 14 H -0.219 1.219 15 C -0.173 4.173 16 C 0.002 3.998 17 C -0.177 4.177 18 C -0.212 4.212 19 H 0.044 0.956 20 H 0.080 0.920 21 H 0.107 0.893 22 H 0.079 0.921 23 H 0.045 0.955 24 H 0.205 0.795 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.051 -13.334 -3.335 15.017 hybrid contribution 0.140 1.684 0.732 1.842 sum -5.910 -11.650 -2.603 13.320 Atomic orbital electron populations 1.22621 0.87320 1.02724 1.00273 1.63613 1.08606 1.13455 1.39633 1.23632 0.97431 0.88834 1.00027 1.21520 0.94192 0.85247 0.93481 0.92546 1.42502 1.56199 1.15332 1.22787 1.19690 1.19662 0.96457 1.01663 0.90614 1.25588 1.03054 0.99898 0.98183 1.69826 1.50214 1.22671 1.19316 0.85059 0.77991 0.78603 0.78032 1.19000 1.22013 1.21882 1.23076 0.99786 0.96805 0.97642 1.21800 0.94859 0.94360 0.88800 1.21694 0.99325 0.95537 1.01189 1.22293 0.97749 1.01376 0.99802 0.95592 0.91975 0.89326 0.92133 0.95545 0.79524 0.93960 0.92613 0.90603 0.91320 0.91564 0.93528 0.93365 0.90327 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 8.29 127.69 1.06 1.54 16 2 N -0.53 -16.27 5.07 -861.34 -4.37 -20.64 16 3 C 0.03 1.21 6.45 86.94 0.56 1.77 16 4 C 0.17 6.92 3.73 46.54 0.17 7.10 16 5 H 0.06 2.43 8.09 -2.39 -0.02 2.41 16 6 N -0.73 -37.99 5.25 -315.63 -1.66 -39.64 16 7 C -0.24 -13.77 9.96 84.03 0.84 -12.93 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 10 N -0.97 -60.00 13.06 21.65 0.28 -59.72 16 11 Si 0.97 46.64 29.55 68.60 2.03 48.67 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 14 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 15 C -0.13 -4.59 5.64 31.77 0.18 -4.41 16 16 C 0.09 2.54 1.16 3.87 0.00 2.54 16 17 C -0.12 -2.85 8.70 71.98 0.63 -2.22 16 18 C -0.15 -3.48 7.15 71.98 0.51 -2.96 16 19 H 0.03 0.67 6.43 -2.39 -0.02 0.66 16 20 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.09 1.80 6.76 -2.39 -0.02 1.79 16 22 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 23 H 0.03 1.09 7.78 -2.38 -0.02 1.07 16 24 H 0.37 20.79 7.76 -92.70 -0.72 20.07 16 25 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 26 H 0.06 2.01 7.72 -2.39 -0.02 1.99 16 27 H 0.08 2.47 7.83 -2.38 -0.02 2.45 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.18 6.61 -2.39 -0.02 1.16 16 32 H 0.08 1.47 6.72 -2.39 -0.02 1.45 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -62.89 261.54 1.06 -61.84 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.35 Total: 22.97 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 4.42 Total: -13.47 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -5.74 Total: -120.00 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -62.89 1.06 -61.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575530489.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.965 kcal (2) G-P(sol) polarization free energy of solvation -62.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds