Wall clock time and date at job start Mon Mar 30 2020 02:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46848 * 2 1 4 4 C 1.50700 * 109.47199 * 240.00120 * 2 1 3 5 5 H 1.08001 * 119.99526 * 244.92735 * 4 2 1 6 6 C 1.37871 * 120.00238 * 64.92383 * 4 2 1 7 7 N 1.31510 * 120.00351 * 187.24379 * 6 4 2 8 8 Si 1.86804 * 119.99883 * 7.25110 * 6 4 2 9 9 H 1.48505 * 109.46927 * 269.99500 * 8 6 4 10 10 H 1.48497 * 109.47171 * 149.99658 * 8 6 4 11 11 H 1.48503 * 109.47209 * 29.99601 * 8 6 4 12 12 N 1.46897 * 109.47243 * 119.99812 * 2 1 3 13 13 C 1.48562 * 110.99856 * 49.48888 * 12 2 1 14 14 C 1.54374 * 104.59482 * 200.95909 * 13 12 2 15 15 H 1.08997 * 110.32780 * 264.96050 * 14 13 12 16 16 N 1.46901 * 110.41190 * 142.79592 * 14 13 12 17 17 C 1.54265 * 105.06085 * 23.85598 * 14 13 12 18 18 C 1.48565 * 111.00166 * 294.07515 * 12 2 1 19 19 H 1.09003 * 110.40803 * 40.25446 * 18 12 2 20 20 C 1.53004 * 110.40697 * 277.93789 * 18 12 2 21 21 H 1.08998 * 109.47039 * 291.99176 * 1 2 3 22 22 H 1.08997 * 109.47459 * 51.98914 * 1 2 3 23 23 H 1.08998 * 109.47317 * 171.99307 * 1 2 3 24 24 H 0.96998 * 119.99712 * 354.91725 * 7 6 4 25 25 H 1.08996 * 110.41195 * 319.74270 * 13 12 2 26 26 H 1.08998 * 110.40728 * 82.18376 * 13 12 2 27 27 H 1.00895 * 111.00016 * 64.30966 * 16 14 13 28 28 H 1.00903 * 111.00677 * 188.26801 * 16 14 13 29 29 H 1.09001 * 110.32414 * 241.09876 * 17 14 13 30 30 H 1.09003 * 110.40902 * 118.94055 * 17 14 13 31 31 H 1.08994 * 109.47485 * 59.99853 * 20 18 12 32 32 H 1.09008 * 109.46964 * 179.97438 * 20 18 12 33 33 H 1.08997 * 109.47131 * 299.99585 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5860 -1.6326 -1.1333 6 6 1.7851 -0.1831 -2.4802 7 7 2.0964 -0.8705 -3.5573 8 14 1.0080 1.5077 -2.6434 9 1 -0.4703 1.3715 -2.6815 10 1 1.4784 2.1497 -3.8971 11 1 1.3981 2.3461 -1.4814 12 7 2.0197 -0.6924 1.1994 13 6 1.3477 -2.0068 1.3670 14 6 1.5291 -2.3486 2.8614 15 1 2.4036 -2.9840 3.0011 16 7 0.3279 -3.0133 3.3844 17 6 1.7370 -0.9896 3.5612 18 6 1.6637 0.0590 2.4306 19 1 0.6543 0.4626 2.3511 20 6 2.6696 1.1851 2.6779 21 1 -0.3633 0.3848 0.9529 22 1 -0.3634 0.6328 -0.8097 23 1 -0.3634 -1.0176 -0.1431 24 1 2.5665 -1.7149 -3.4746 25 1 0.2889 -1.9265 1.1211 26 1 1.8275 -2.7612 0.7435 27 1 0.1821 -3.9039 2.9333 28 1 0.3807 -3.1198 4.3864 29 1 2.7136 -0.9580 4.0443 30 1 0.9478 -0.8139 4.2923 31 1 2.6639 1.8700 1.8300 32 1 2.3941 1.7260 3.5833 33 1 3.6670 0.7619 2.7964 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575591068.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:29 Heat of formation + Delta-G solvation = 5.681143 kcal Electronic energy + Delta-G solvation = -13512.553830 eV Core-core repulsion = 11380.024877 eV Total energy + Delta-G solvation = -2132.528954 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.98349 -34.66576 -32.83069 -31.32437 -29.18583 -27.16374 -25.00354 -24.66317 -21.18399 -19.82929 -18.69034 -17.16573 -16.03831 -15.09139 -14.96997 -13.93372 -13.87701 -13.59135 -13.03272 -12.51149 -12.33252 -11.79254 -11.57383 -11.39921 -10.98634 -10.94948 -10.57556 -10.54579 -10.31899 -10.12824 -9.80399 -9.61149 -8.70780 -8.54745 -8.31727 -7.40231 -6.36989 -3.99245 3.39383 3.45910 3.60814 4.52062 4.54647 5.03680 5.08414 5.13365 5.35710 5.47688 5.69786 5.89759 5.95336 6.06595 6.20543 6.24209 6.33148 6.39128 6.43436 6.48692 6.62222 6.65884 6.74324 6.95990 7.15805 7.38291 7.53235 7.72944 8.05284 8.31030 8.49728 9.02967 9.69426 11.03737 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043526 B = 0.011837 C = 0.010594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.134456 B = 2364.848447 C = 2642.467750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.170 3.830 3 H 0.039 0.961 4 C -0.573 4.573 5 H 0.061 0.939 6 C 0.025 3.975 7 N -0.917 5.917 8 Si 1.055 2.945 9 H -0.286 1.286 10 H -0.290 1.290 11 H -0.281 1.281 12 N -0.487 5.487 13 C 0.047 3.953 14 C 0.079 3.921 15 H 0.038 0.962 16 N -0.844 5.844 17 C -0.111 4.111 18 C 0.048 3.952 19 H 0.051 0.949 20 C -0.133 4.133 21 H 0.030 0.970 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.266 0.734 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.339 0.661 28 H 0.335 0.665 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 0.146 13.345 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.061 3.939 3 H 0.057 0.943 4 C -0.611 4.611 5 H 0.079 0.921 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.885 3.115 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.207 1.207 12 N -0.211 5.211 13 C -0.082 4.082 14 C -0.032 4.032 15 H 0.056 0.944 16 N -0.374 5.374 17 C -0.150 4.150 18 C -0.061 4.061 19 H 0.069 0.931 20 C -0.190 4.190 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.557 1.828 11.862 12.271 hybrid contribution 0.303 -1.835 1.423 2.342 sum -2.254 -0.007 13.284 13.474 Atomic orbital electron populations 1.22776 1.01568 1.01259 0.98666 1.19932 0.89060 0.95498 0.89376 0.94311 1.21984 1.38395 1.10476 0.90295 0.92088 1.25682 0.96593 1.03602 0.92025 1.70810 1.38376 1.15725 1.30325 0.83849 0.76203 0.75922 0.75510 1.21274 1.21661 1.20688 1.65613 1.52605 1.01746 1.01152 1.22994 0.99031 0.93616 0.92562 1.22178 0.90070 0.94759 0.96232 0.94386 1.58836 1.40957 1.28470 1.09139 1.22392 1.00983 0.94104 0.97486 1.22642 0.97545 0.94403 0.91514 0.93148 1.21679 0.99295 0.97646 1.00423 0.95122 0.93618 0.92536 0.92382 0.92135 0.91096 0.84866 0.85290 0.91701 0.91478 0.92539 0.93380 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.16 7.77 37.16 0.29 -3.88 16 2 C 0.17 4.15 1.87 -68.87 -0.13 4.02 16 3 H 0.04 0.98 5.71 -51.93 -0.30 0.69 16 4 C -0.57 -16.38 8.66 -34.44 -0.30 -16.68 16 5 H 0.06 1.90 7.73 -52.49 -0.41 1.49 16 6 C 0.02 0.72 5.42 -17.82 -0.10 0.63 16 7 N -0.92 -28.68 13.70 55.43 0.76 -27.92 16 8 Si 1.05 26.09 25.37 -169.99 -4.31 21.78 16 9 H -0.29 -6.75 6.79 56.52 0.38 -6.37 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.28 -6.49 6.37 56.52 0.36 -6.13 16 12 N -0.49 -10.53 5.03 -215.62 -1.08 -11.61 16 13 C 0.05 0.93 5.44 -2.18 -0.01 0.91 16 14 C 0.08 1.24 4.19 -66.33 -0.28 0.96 16 15 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 16 N -0.84 -11.09 9.15 -3.49 -0.03 -11.12 16 17 C -0.11 -1.68 6.29 -25.35 -0.16 -1.84 16 18 C 0.05 0.86 2.74 -66.07 -0.18 0.68 16 19 H 0.05 0.94 5.90 -51.93 -0.31 0.63 16 20 C -0.13 -2.15 9.37 37.16 0.35 -1.80 16 21 H 0.03 0.62 6.03 -51.93 -0.31 0.30 16 22 H 0.05 1.04 4.55 -51.93 -0.24 0.81 16 23 H 0.06 1.30 6.39 -51.93 -0.33 0.97 16 24 H 0.27 8.31 8.72 -40.82 -0.36 7.95 16 25 H 0.06 1.26 5.33 -51.93 -0.28 0.99 16 26 H 0.07 1.52 7.87 -51.93 -0.41 1.11 16 27 H 0.34 4.04 9.08 -39.29 -0.36 3.69 16 28 H 0.34 3.58 9.01 -39.29 -0.35 3.23 16 29 H 0.06 0.91 7.83 -51.93 -0.41 0.50 16 30 H 0.07 0.93 7.95 -51.93 -0.41 0.51 16 31 H 0.06 0.98 7.31 -51.93 -0.38 0.60 16 32 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 LS Contribution 249.04 15.07 3.75 3.75 Total: -1.00 -30.61 249.04 -6.39 -37.00 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.96 Total: 5.10 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -0.52 Total: -16.99 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.36 Total: -50.65 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -4.31 Total: 21.78 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.61 -6.39 -37.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575591068.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.683 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds