Wall clock time and date at job start Mon Mar 30 2020 02:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46848 * 2 1 4 4 C 1.50700 * 109.47199 * 240.00120 * 2 1 3 5 5 H 1.08001 * 119.99526 * 244.92735 * 4 2 1 6 6 C 1.37871 * 120.00238 * 64.92383 * 4 2 1 7 7 N 1.31510 * 120.00351 * 187.24379 * 6 4 2 8 8 Si 1.86804 * 119.99883 * 7.25110 * 6 4 2 9 9 H 1.48505 * 109.46927 * 269.99500 * 8 6 4 10 10 H 1.48497 * 109.47171 * 149.99658 * 8 6 4 11 11 H 1.48503 * 109.47209 * 29.99601 * 8 6 4 12 12 N 1.46897 * 109.47243 * 119.99812 * 2 1 3 13 13 C 1.48562 * 110.99856 * 49.48888 * 12 2 1 14 14 C 1.54374 * 104.59482 * 200.95909 * 13 12 2 15 15 H 1.08997 * 110.32780 * 264.96050 * 14 13 12 16 16 N 1.46901 * 110.41190 * 142.79592 * 14 13 12 17 17 C 1.54265 * 105.06085 * 23.85598 * 14 13 12 18 18 C 1.48565 * 111.00166 * 294.07515 * 12 2 1 19 19 H 1.09003 * 110.40803 * 40.25446 * 18 12 2 20 20 C 1.53004 * 110.40697 * 277.93789 * 18 12 2 21 21 H 1.08998 * 109.47039 * 291.99176 * 1 2 3 22 22 H 1.08997 * 109.47459 * 51.98914 * 1 2 3 23 23 H 1.08998 * 109.47317 * 171.99307 * 1 2 3 24 24 H 0.96998 * 119.99712 * 354.91725 * 7 6 4 25 25 H 1.08996 * 110.41195 * 319.74270 * 13 12 2 26 26 H 1.08998 * 110.40728 * 82.18376 * 13 12 2 27 27 H 1.00895 * 111.00016 * 64.30966 * 16 14 13 28 28 H 1.00903 * 111.00677 * 188.26801 * 16 14 13 29 29 H 1.09001 * 110.32414 * 241.09876 * 17 14 13 30 30 H 1.09003 * 110.40902 * 118.94055 * 17 14 13 31 31 H 1.08994 * 109.47485 * 59.99853 * 20 18 12 32 32 H 1.09008 * 109.46964 * 179.97438 * 20 18 12 33 33 H 1.08997 * 109.47131 * 299.99585 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5860 -1.6326 -1.1333 6 6 1.7851 -0.1831 -2.4802 7 7 2.0964 -0.8705 -3.5573 8 14 1.0080 1.5077 -2.6434 9 1 -0.4703 1.3715 -2.6815 10 1 1.4784 2.1497 -3.8971 11 1 1.3981 2.3461 -1.4814 12 7 2.0197 -0.6924 1.1994 13 6 1.3477 -2.0068 1.3670 14 6 1.5291 -2.3486 2.8614 15 1 2.4036 -2.9840 3.0011 16 7 0.3279 -3.0133 3.3844 17 6 1.7370 -0.9896 3.5612 18 6 1.6637 0.0590 2.4306 19 1 0.6543 0.4626 2.3511 20 6 2.6696 1.1851 2.6779 21 1 -0.3633 0.3848 0.9529 22 1 -0.3634 0.6328 -0.8097 23 1 -0.3634 -1.0176 -0.1431 24 1 2.5665 -1.7149 -3.4746 25 1 0.2889 -1.9265 1.1211 26 1 1.8275 -2.7612 0.7435 27 1 0.1821 -3.9039 2.9333 28 1 0.3807 -3.1198 4.3864 29 1 2.7136 -0.9580 4.0443 30 1 0.9478 -0.8139 4.2923 31 1 2.6639 1.8700 1.8300 32 1 2.3941 1.7260 3.5833 33 1 3.6670 0.7619 2.7964 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575591068.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:29 Heat of formation + Delta-G solvation = -19.252040 kcal Electronic energy + Delta-G solvation = -13513.635014 eV Core-core repulsion = 11380.024877 eV Total energy + Delta-G solvation = -2133.610138 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.50814 -36.30402 -34.56276 -33.08678 -30.71461 -28.57919 -26.94497 -26.26869 -22.88696 -21.27585 -20.38559 -19.28871 -17.45541 -16.61224 -16.18913 -15.65592 -15.43659 -15.18896 -14.70744 -14.46680 -13.88613 -13.47176 -13.11832 -12.92258 -12.62756 -12.60802 -12.22508 -11.99213 -11.85703 -11.61831 -11.57807 -11.43600 -10.88099 -10.55506 -9.64890 -9.09687 -8.71540 -6.35146 1.40413 1.51188 1.67687 2.46534 3.08539 3.21376 3.69699 3.79556 3.82238 4.16229 4.28142 4.48287 4.55204 4.60015 4.64892 4.75119 4.82815 4.86013 4.94841 5.03207 5.07932 5.18001 5.26958 5.38875 5.46542 5.80841 6.04465 6.17322 6.27754 6.47643 6.61974 6.72293 7.43658 8.67279 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043526 B = 0.011837 C = 0.010594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.134456 B = 2364.848447 C = 2642.467750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.173 3.827 3 H 0.036 0.964 4 C -0.572 4.572 5 H 0.017 0.983 6 C -0.028 4.028 7 N -0.948 5.948 8 Si 1.092 2.908 9 H -0.265 1.265 10 H -0.290 1.290 11 H -0.253 1.253 12 N -0.509 5.509 13 C 0.046 3.954 14 C 0.090 3.910 15 H 0.042 0.958 16 N -0.843 5.843 17 C -0.102 4.102 18 C 0.043 3.957 19 H 0.048 0.952 20 C -0.130 4.130 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.249 0.751 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.346 0.654 28 H 0.354 0.646 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 1.572 15.926 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.064 3.936 3 H 0.054 0.946 4 C -0.610 4.610 5 H 0.036 0.964 6 C -0.225 4.225 7 N -0.586 5.586 8 Si 0.915 3.085 9 H -0.190 1.190 10 H -0.217 1.217 11 H -0.178 1.178 12 N -0.233 5.233 13 C -0.083 4.083 14 C -0.022 4.022 15 H 0.060 0.940 16 N -0.376 5.376 17 C -0.140 4.140 18 C -0.066 4.066 19 H 0.066 0.934 20 C -0.187 4.187 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.159 0.841 28 H 0.168 0.832 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.611 3.230 14.491 15.280 hybrid contribution 0.686 -2.384 0.665 2.568 sum -2.925 0.847 15.156 15.459 Atomic orbital electron populations 1.22611 0.99835 1.00748 1.00193 1.19704 0.90193 0.94744 0.88984 0.94608 1.22163 1.37205 1.08981 0.92690 0.96441 1.27156 0.96811 1.06731 0.91770 1.70942 1.40422 1.15718 1.31490 0.83413 0.76712 0.71885 0.76497 1.19021 1.21695 1.17751 1.65479 1.53283 1.02732 1.01816 1.22929 0.97615 0.92335 0.95394 1.21960 0.91212 0.95798 0.93236 0.94036 1.58733 1.39382 1.28959 1.10536 1.22373 1.02777 0.92162 0.96692 1.22811 0.97842 0.95394 0.90509 0.93378 1.21682 0.98811 0.96909 1.01325 0.92282 0.93683 0.93734 0.94183 0.93216 0.94341 0.84129 0.83173 0.90112 0.89265 0.94245 0.89938 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.65 7.77 71.98 0.56 -7.09 16 2 C 0.17 8.37 1.87 44.17 0.08 8.45 16 3 H 0.04 1.77 5.71 -2.39 -0.01 1.76 16 4 C -0.57 -33.68 8.66 25.60 0.22 -33.46 16 5 H 0.02 1.14 7.73 -2.91 -0.02 1.12 16 6 C -0.03 -1.69 5.42 84.65 0.46 -1.24 16 7 N -0.95 -61.35 13.70 21.44 0.29 -61.06 16 8 Si 1.09 51.82 25.37 68.60 1.74 53.56 16 9 H -0.26 -11.62 6.79 99.48 0.68 -10.95 16 10 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 11 H -0.25 -10.80 6.37 99.48 0.63 -10.17 16 12 N -0.51 -21.68 5.03 -836.09 -4.20 -25.89 16 13 C 0.05 1.83 5.44 86.45 0.47 2.30 16 14 C 0.09 2.63 4.19 45.81 0.19 2.82 16 15 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 16 N -0.84 -19.83 9.15 -164.97 -1.51 -21.34 16 17 C -0.10 -2.70 6.29 31.49 0.20 -2.50 16 18 C 0.04 1.42 2.74 45.06 0.12 1.54 16 19 H 0.05 1.62 5.90 -2.39 -0.01 1.61 16 20 C -0.13 -3.79 9.37 71.98 0.67 -3.12 16 21 H 0.06 2.23 6.03 -2.39 -0.01 2.21 16 22 H 0.04 1.95 4.55 -2.39 -0.01 1.94 16 23 H 0.04 2.02 6.39 -2.39 -0.02 2.01 16 24 H 0.25 16.43 8.72 -92.71 -0.81 15.62 16 25 H 0.05 2.06 5.33 -2.39 -0.01 2.05 16 26 H 0.04 1.72 7.87 -2.39 -0.02 1.70 16 27 H 0.35 7.55 9.08 -89.70 -0.81 6.73 16 28 H 0.35 6.25 9.01 -89.69 -0.81 5.44 16 29 H 0.08 1.92 7.83 -2.39 -0.02 1.90 16 30 H 0.09 2.02 7.95 -2.39 -0.02 2.00 16 31 H 0.04 1.27 7.31 -2.39 -0.02 1.25 16 32 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.06 1.67 8.09 -2.39 -0.02 1.65 16 Total: -1.00 -67.83 249.04 -1.35 -69.18 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -0.65 Total: 17.84 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 2.98 Total: -32.30 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -5.42 Total: -108.28 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 1.74 Total: 53.56 kcal Total: -67.83 -1.35 -69.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575591068.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.925 kcal (2) G-P(sol) polarization free energy of solvation -67.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds