Wall clock time and date at job start Mon Mar 30 2020 02:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.06927 * 2 1 4 4 C 1.53994 * 109.91878 * 121.21076 * 2 1 3 5 5 C 1.54597 * 105.13859 * 120.57741 * 4 2 1 6 6 H 1.09000 * 110.72350 * 263.41900 * 5 4 2 7 7 N 1.46899 * 110.72604 * 140.31932 * 5 4 2 8 8 C 1.54938 * 102.92386 * 21.95587 * 5 4 2 9 9 N 1.47908 * 109.91423 * 238.80144 * 2 1 3 10 10 C 1.46893 * 111.00099 * 94.80667 * 9 2 1 11 11 C 1.53004 * 109.47285 * 170.00138 * 10 9 2 12 12 C 1.50701 * 109.47211 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 H 1.09008 * 109.47438 * 181.20094 * 1 2 3 21 21 H 1.08996 * 109.47087 * 301.19885 * 1 2 3 22 22 H 1.09000 * 109.47171 * 61.20350 * 1 2 3 23 23 H 1.09001 * 110.30981 * 239.49210 * 4 2 1 24 24 H 1.09007 * 110.30737 * 1.66442 * 4 2 1 25 25 H 1.00898 * 111.00487 * 179.97438 * 7 5 4 26 26 H 1.00903 * 110.99990 * 303.95324 * 7 5 4 27 27 H 1.09001 * 110.66550 * 204.15066 * 8 5 4 28 28 H 1.09000 * 110.66415 * 81.02527 * 8 5 4 29 29 H 1.09000 * 109.47823 * 49.99500 * 10 9 2 30 30 H 1.09007 * 109.47029 * 289.99268 * 10 9 2 31 31 H 1.09000 * 109.47211 * 59.98987 * 11 10 9 32 32 H 1.09007 * 109.46376 * 299.99529 * 11 10 9 33 33 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7502 1.2383 5 6 2.9059 -1.9118 0.6759 6 1 2.3223 -2.8313 0.6316 7 7 4.1179 -2.1061 1.4829 8 6 3.2680 -1.4184 -0.7474 9 7 2.0338 -0.7204 -1.1895 10 6 2.3211 0.2124 -2.2873 11 6 3.0672 -0.5250 -3.4011 12 6 3.3614 0.4318 -4.5276 13 1 3.0473 1.4627 -4.4564 14 6 4.0261 -0.0103 -5.6517 15 7 4.4083 -1.2657 -5.7385 16 14 4.3839 1.1738 -7.0514 17 1 3.8537 2.5182 -6.7102 18 1 5.8511 1.2594 -7.2646 19 1 3.7311 0.6851 -8.2924 20 1 -0.3634 -1.0275 0.0215 21 1 -0.3633 0.5323 0.8790 22 1 -0.3633 0.4950 -0.9006 23 1 2.6714 -0.0897 1.8477 24 1 1.2227 -1.1404 1.8248 25 1 4.6766 -2.8637 1.1197 26 1 4.6558 -1.2542 1.5385 27 1 3.4887 -2.2615 -1.4022 28 1 4.1097 -0.7267 -0.7123 29 1 2.9383 1.0309 -1.9167 30 1 1.3855 0.6115 -2.6793 31 1 2.4500 -1.3435 -3.7718 32 1 4.0027 -0.9241 -3.0092 33 1 4.8756 -1.5768 -6.5295 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642826211.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:05 Heat of formation + Delta-G solvation = -11.412451 kcal Electronic energy + Delta-G solvation = -12942.490651 eV Core-core repulsion = 10809.220464 eV Total energy + Delta-G solvation = -2133.270188 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.06139 -34.42457 -33.15100 -31.69528 -29.08211 -27.67270 -25.36493 -23.89957 -21.26673 -19.81088 -19.62003 -16.50350 -16.24055 -15.31176 -14.50271 -14.39413 -13.87195 -13.63291 -13.23173 -12.65231 -12.33477 -12.10734 -11.70266 -11.50786 -11.21747 -11.04187 -10.89707 -10.64025 -10.52181 -10.37663 -9.91126 -9.34762 -9.13632 -8.63790 -8.37479 -7.83145 -6.02720 -4.05254 3.29019 3.36473 3.40607 4.31260 4.45670 4.77438 4.94719 5.02837 5.27796 5.33422 5.46798 5.61403 5.74866 5.90086 5.96723 6.11004 6.14321 6.21829 6.31463 6.39762 6.46434 6.55985 6.91821 7.14887 7.45895 7.48687 7.50318 7.71547 7.84339 8.03223 8.40402 9.01868 9.58730 11.08694 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048954 B = 0.007986 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.826661 B = 3505.459819 C = 3886.395124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 H 0.046 0.954 4 C -0.117 4.117 5 C 0.083 3.917 6 H 0.092 0.908 7 N -0.842 5.842 8 C 0.010 3.990 9 N -0.511 5.511 10 C 0.055 3.945 11 C 0.025 3.975 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 H 0.059 0.941 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.342 0.658 26 H 0.338 0.662 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.019 0.981 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.016 0.984 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.146 0.594 11.878 12.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.053 4.053 3 H 0.064 0.936 4 C -0.156 4.156 5 C -0.029 4.029 6 H 0.110 0.890 7 N -0.370 5.370 8 C -0.120 4.120 9 N -0.235 5.235 10 C -0.073 4.073 11 C -0.012 4.012 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 H 0.078 0.922 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.154 0.846 26 H 0.150 0.850 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.034 0.966 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.959 -0.050 12.169 12.797 hybrid contribution 1.413 1.499 -1.595 2.605 sum -2.546 1.448 10.574 10.973 Atomic orbital electron populations 1.21715 0.94364 1.01980 1.00848 1.22433 0.96247 0.96206 0.90463 0.93559 1.22481 0.99409 0.96787 0.96894 1.22449 0.91621 0.98779 0.90062 0.89024 1.58977 1.10345 1.11249 1.56431 1.23962 0.92466 0.99083 0.96459 1.64757 1.26019 1.27169 1.05582 1.22500 0.99437 0.93351 0.91973 1.19147 0.94784 0.95864 0.91431 1.21230 1.36702 0.96210 1.01916 0.92723 1.25000 0.95782 0.95143 0.98425 1.69976 1.39690 1.14757 1.28848 0.86532 0.77927 0.81244 0.82282 1.19757 1.21020 1.20917 0.92159 0.93131 0.92662 0.91632 0.90940 0.84553 0.84988 0.89845 0.94140 0.96245 0.91894 0.95777 0.96609 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.32 37.16 0.35 -1.44 16 2 C 0.06 0.85 3.08 -66.64 -0.21 0.65 16 3 H 0.05 0.73 7.57 -51.93 -0.39 0.34 16 4 C -0.12 -1.56 6.29 -25.37 -0.16 -1.72 16 5 C 0.08 1.16 4.21 -65.85 -0.28 0.88 16 6 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 7 N -0.84 -10.18 9.34 -3.09 -0.03 -10.21 16 8 C 0.01 0.18 4.76 -1.90 -0.01 0.17 16 9 N -0.51 -9.52 5.03 -222.57 -1.12 -10.64 16 10 C 0.05 1.19 4.97 -3.83 -0.02 1.17 16 11 C 0.03 0.66 4.63 -27.88 -0.13 0.53 16 12 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 16 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.82 7.95 -51.93 -0.41 0.41 16 24 H 0.07 0.88 7.69 -51.92 -0.40 0.48 16 25 H 0.34 3.77 9.08 -39.29 -0.36 3.41 16 26 H 0.34 3.86 8.86 -39.29 -0.35 3.51 16 27 H 0.08 1.58 7.66 -51.93 -0.40 1.18 16 28 H 0.04 0.73 7.97 -51.93 -0.41 0.32 16 29 H 0.02 0.42 7.81 -51.93 -0.41 0.02 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.02 0.43 6.79 -51.93 -0.35 0.08 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 266.62 15.07 4.02 4.02 Total: -1.00 -30.03 266.62 -7.84 -37.87 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.56 Total: 1.91 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -0.86 Total: -13.46 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.41 Total: -47.11 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.03 -7.84 -37.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642826211.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.455 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds