Wall clock time and date at job start Mon Mar 30 2020 02:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.06927 * 2 1 4 4 C 1.53994 * 109.91878 * 121.21076 * 2 1 3 5 5 C 1.54597 * 105.13859 * 120.57741 * 4 2 1 6 6 H 1.09000 * 110.72350 * 263.41900 * 5 4 2 7 7 N 1.46899 * 110.72604 * 140.31932 * 5 4 2 8 8 C 1.54938 * 102.92386 * 21.95587 * 5 4 2 9 9 N 1.47908 * 109.91423 * 238.80144 * 2 1 3 10 10 C 1.46893 * 111.00099 * 94.80667 * 9 2 1 11 11 C 1.53004 * 109.47285 * 170.00138 * 10 9 2 12 12 C 1.50701 * 109.47211 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 H 1.09008 * 109.47438 * 181.20094 * 1 2 3 21 21 H 1.08996 * 109.47087 * 301.19885 * 1 2 3 22 22 H 1.09000 * 109.47171 * 61.20350 * 1 2 3 23 23 H 1.09001 * 110.30981 * 239.49210 * 4 2 1 24 24 H 1.09007 * 110.30737 * 1.66442 * 4 2 1 25 25 H 1.00898 * 111.00487 * 179.97438 * 7 5 4 26 26 H 1.00903 * 110.99990 * 303.95324 * 7 5 4 27 27 H 1.09001 * 110.66550 * 204.15066 * 8 5 4 28 28 H 1.09000 * 110.66415 * 81.02527 * 8 5 4 29 29 H 1.09000 * 109.47823 * 49.99500 * 10 9 2 30 30 H 1.09007 * 109.47029 * 289.99268 * 10 9 2 31 31 H 1.09000 * 109.47211 * 59.98987 * 11 10 9 32 32 H 1.09007 * 109.46376 * 299.99529 * 11 10 9 33 33 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7502 1.2383 5 6 2.9059 -1.9118 0.6759 6 1 2.3223 -2.8313 0.6316 7 7 4.1179 -2.1061 1.4829 8 6 3.2680 -1.4184 -0.7474 9 7 2.0338 -0.7204 -1.1895 10 6 2.3211 0.2124 -2.2873 11 6 3.0672 -0.5250 -3.4011 12 6 3.3614 0.4318 -4.5276 13 1 3.0473 1.4627 -4.4564 14 6 4.0261 -0.0103 -5.6517 15 7 4.4083 -1.2657 -5.7385 16 14 4.3839 1.1738 -7.0514 17 1 3.8537 2.5182 -6.7102 18 1 5.8511 1.2594 -7.2646 19 1 3.7311 0.6851 -8.2924 20 1 -0.3634 -1.0275 0.0215 21 1 -0.3633 0.5323 0.8790 22 1 -0.3633 0.4950 -0.9006 23 1 2.6714 -0.0897 1.8477 24 1 1.2227 -1.1404 1.8248 25 1 4.6766 -2.8637 1.1197 26 1 4.6558 -1.2542 1.5385 27 1 3.4887 -2.2615 -1.4022 28 1 4.1097 -0.7267 -0.7123 29 1 2.9383 1.0309 -1.9167 30 1 1.3855 0.6115 -2.6793 31 1 2.4500 -1.3435 -3.7718 32 1 4.0027 -0.9241 -3.0092 33 1 4.8756 -1.5768 -6.5295 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642826211.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:05 Heat of formation + Delta-G solvation = -33.835798 kcal Electronic energy + Delta-G solvation = -12943.463001 eV Core-core repulsion = 10809.220464 eV Total energy + Delta-G solvation = -2134.242537 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.40164 -36.06337 -34.81904 -33.31186 -30.69268 -29.08095 -26.77168 -25.76185 -22.82392 -21.37706 -20.92033 -18.56788 -17.44168 -16.74771 -16.52102 -15.93721 -15.19249 -14.98734 -14.48910 -14.34523 -13.99163 -13.56465 -13.21992 -12.92201 -12.91058 -12.77828 -12.37895 -12.34468 -11.85238 -11.79862 -11.52374 -11.32667 -11.22435 -10.61150 -9.73540 -9.33060 -8.24962 -6.36992 1.37077 1.37827 1.51176 2.36667 3.02279 3.08234 3.54453 3.74592 3.89581 4.13149 4.22549 4.39228 4.44649 4.51136 4.55589 4.80429 4.86306 4.91720 4.97684 5.03623 5.10601 5.25350 5.39441 5.43738 5.57670 5.73468 5.94782 6.11649 6.22104 6.27439 6.51851 6.79515 7.32550 8.87255 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048954 B = 0.007986 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.826661 B = 3505.459819 C = 3886.395124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.051 3.949 3 H 0.044 0.956 4 C -0.108 4.108 5 C 0.095 3.905 6 H 0.093 0.907 7 N -0.834 5.834 8 C 0.010 3.990 9 N -0.523 5.523 10 C 0.072 3.928 11 C 0.036 3.964 12 C -0.547 4.547 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.968 3.032 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.276 1.276 20 H 0.060 0.940 21 H 0.079 0.921 22 H 0.041 0.959 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.348 0.652 26 H 0.344 0.656 27 H 0.056 0.944 28 H 0.030 0.970 29 H 0.019 0.981 30 H 0.061 0.939 31 H -0.010 1.010 32 H -0.006 1.006 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.498 1.621 12.854 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.057 4.057 3 H 0.062 0.938 4 C -0.146 4.146 5 C -0.017 4.017 6 H 0.111 0.889 7 N -0.363 5.363 8 C -0.120 4.120 9 N -0.247 5.247 10 C -0.056 4.056 11 C -0.002 4.002 12 C -0.586 4.586 13 H 0.077 0.923 14 C -0.197 4.197 15 N -0.570 5.570 16 Si 0.792 3.208 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.202 1.202 20 H 0.079 0.921 21 H 0.098 0.902 22 H 0.060 0.940 23 H 0.096 0.904 24 H 0.110 0.890 25 H 0.162 0.838 26 H 0.157 0.843 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.009 0.991 32 H 0.013 0.987 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.312 0.976 13.170 13.892 hybrid contribution 1.532 1.132 -1.873 2.672 sum -2.780 2.108 11.296 11.823 Atomic orbital electron populations 1.21706 0.92838 1.02314 1.01632 1.22586 0.97439 0.95963 0.89744 0.93821 1.22454 0.99966 0.96223 0.95988 1.22330 0.92526 0.99053 0.87836 0.88938 1.58993 1.10138 1.11835 1.55327 1.23966 0.91795 0.97856 0.98409 1.64703 1.26557 1.26962 1.06525 1.22135 0.98474 0.93151 0.91861 1.18948 0.93681 0.94915 0.92609 1.21644 1.37143 0.96765 1.03009 0.92295 1.25981 0.95290 0.97018 1.01367 1.70108 1.40224 1.16811 1.29899 0.85358 0.78017 0.79019 0.78405 1.18615 1.20171 1.20183 0.92136 0.90189 0.93959 0.90387 0.88981 0.83835 0.84330 0.92562 0.95205 0.96320 0.92045 0.99146 0.98719 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.32 71.98 0.67 -2.51 16 2 C 0.05 1.48 3.08 45.06 0.14 1.62 16 3 H 0.04 1.30 7.57 -2.39 -0.02 1.29 16 4 C -0.11 -2.57 6.29 31.47 0.20 -2.37 16 5 C 0.10 2.53 4.21 46.12 0.19 2.72 16 6 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 7 N -0.83 -18.68 9.34 -163.69 -1.53 -20.21 16 8 C 0.01 0.36 4.76 86.65 0.41 0.77 16 9 N -0.52 -19.57 5.03 -858.08 -4.31 -23.89 16 10 C 0.07 3.19 4.97 86.31 0.43 3.62 16 11 C 0.04 1.97 4.63 29.85 0.14 2.11 16 12 C -0.55 -31.98 9.11 25.60 0.23 -31.74 16 13 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 14 C 0.00 0.09 5.46 84.65 0.46 0.55 16 15 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 16 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 17 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 21 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.08 1.70 7.95 -2.39 -0.02 1.68 16 24 H 0.09 1.89 7.69 -2.38 -0.02 1.87 16 25 H 0.35 7.22 9.08 -89.70 -0.81 6.41 16 26 H 0.34 7.21 8.86 -89.69 -0.79 6.42 16 27 H 0.06 2.24 7.66 -2.39 -0.02 2.22 16 28 H 0.03 1.10 7.97 -2.39 -0.02 1.08 16 29 H 0.02 0.82 7.81 -2.39 -0.02 0.80 16 30 H 0.06 2.71 8.14 -2.38 -0.02 2.69 16 31 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H -0.01 -0.32 6.79 -2.38 -0.02 -0.34 16 33 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -64.85 266.62 -1.18 -66.03 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -0.53 Total: 13.61 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 2.88 Total: -25.23 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -5.56 Total: -101.17 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -64.85 -1.18 -66.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642826211.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.195 kcal (2) G-P(sol) polarization free energy of solvation -64.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds