Wall clock time and date at job start Mon Mar 30 2020 02:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.47271 * 2 1 4 4 C 1.53000 * 109.46990 * 119.99830 * 2 1 3 5 5 C 1.50704 * 109.47218 * 295.04132 * 4 2 1 6 6 H 1.08005 * 120.00018 * 4.27810 * 5 4 2 7 7 C 1.37871 * 120.00071 * 184.28092 * 5 4 2 8 8 N 1.31515 * 120.00303 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99974 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47472 * 59.99861 * 9 7 5 11 11 H 1.48508 * 109.47062 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47228 * 299.99749 * 9 7 5 13 13 N 1.46900 * 109.47190 * 239.99526 * 2 1 3 14 14 C 1.47845 * 111.00032 * 183.06996 * 13 2 1 15 15 C 1.54909 * 104.79284 * 213.63881 * 14 13 2 16 16 C 1.55133 * 101.65465 * 37.07228 * 15 14 13 17 17 H 1.09000 * 110.85566 * 82.79826 * 16 15 14 18 18 N 1.46898 * 110.70651 * 205.96003 * 16 15 14 19 19 C 1.47447 * 110.99511 * 62.22946 * 13 2 1 20 20 H 1.09000 * 109.47124 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46760 * 300.00152 * 1 2 3 22 22 H 1.09001 * 109.46861 * 60.00183 * 1 2 3 23 23 H 1.08991 * 109.47312 * 55.04502 * 4 2 1 24 24 H 1.09006 * 109.46928 * 175.04417 * 4 2 1 25 25 H 0.96995 * 120.00621 * 180.02562 * 8 7 5 26 26 H 1.09000 * 110.37313 * 332.46829 * 14 13 2 27 27 H 1.08997 * 110.37191 * 94.80874 * 14 13 2 28 28 H 1.08999 * 110.99158 * 278.97464 * 15 14 13 29 29 H 1.09007 * 110.98668 * 155.16646 * 15 14 13 30 30 H 1.00899 * 111.00612 * 293.60107 * 18 16 15 31 31 H 1.00904 * 110.99854 * 57.55184 * 18 16 15 32 32 H 1.09005 * 109.88765 * 242.66340 * 19 13 2 33 33 H 1.08999 * 109.89376 * 3.68734 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6404 0.0566 2.4767 6 1 1.0205 0.9358 2.3808 7 6 2.0663 -0.3541 3.7220 8 7 2.8209 -1.4249 3.8389 9 14 1.5705 0.6097 5.2434 10 1 0.0900 0.6264 5.3581 11 1 2.1526 -0.0339 6.4486 12 1 2.0742 2.0023 5.1333 13 7 2.0197 -0.6926 -1.1994 14 6 3.4958 -0.7767 -1.1971 15 6 3.8999 -0.6768 -2.6892 16 6 2.8652 0.3467 -3.2263 17 1 3.1874 1.3678 -3.0223 18 7 2.6412 0.1525 -4.6651 19 6 1.5911 0.0062 -2.4249 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6060 -1.7200 1.2948 24 1 3.1264 -0.7987 1.2060 25 1 3.1203 -1.7140 4.7150 26 1 3.9222 0.0522 -0.6322 27 1 3.8209 -1.7292 -0.7788 28 1 3.7919 -1.6398 -3.1883 29 1 4.9160 -0.2963 -2.7939 30 1 3.4717 0.3740 -5.1935 31 1 2.3293 -0.7873 -4.8589 32 1 0.9443 -0.6431 -3.0151 33 1 1.0590 0.9209 -2.1636 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642843435.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:32 Heat of formation + Delta-G solvation = -7.791525 kcal Electronic energy + Delta-G solvation = -13044.520022 eV Core-core repulsion = 10911.406850 eV Total energy + Delta-G solvation = -2133.113173 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.99141 -35.08077 -32.78126 -31.28248 -28.90743 -27.01090 -26.41960 -23.23305 -21.35718 -20.39809 -18.95527 -16.53386 -16.46587 -15.28283 -14.67134 -14.34960 -13.68974 -13.40355 -12.97176 -12.69081 -12.23462 -11.98803 -11.58988 -11.46977 -11.09554 -10.85410 -10.70068 -10.69252 -10.60141 -10.34100 -9.91661 -9.16774 -9.08345 -8.67927 -8.32667 -7.65479 -5.98120 -3.99895 3.33954 3.38427 3.40703 4.36627 4.49434 4.63683 4.94454 5.03703 5.23066 5.37685 5.62867 5.67252 5.87964 6.01408 6.05686 6.14742 6.25428 6.34207 6.37534 6.49280 6.72068 6.94397 7.08791 7.13161 7.37036 7.58488 7.60593 7.80301 7.89352 8.10173 8.46101 9.06396 9.63289 11.13348 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.065005 B = 0.007934 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.630025 B = 3528.276024 C = 3752.178840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.080 3.920 3 H 0.028 0.972 4 C 0.032 3.968 5 C -0.518 4.518 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.527 5.527 14 C 0.052 3.948 15 C -0.166 4.166 16 C 0.068 3.932 17 H 0.083 0.917 18 N -0.840 5.840 19 C 0.049 3.951 20 H 0.053 0.947 21 H 0.065 0.935 22 H 0.032 0.968 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.260 0.740 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.338 0.662 31 H 0.341 0.659 32 H 0.072 0.928 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 2.179 -12.242 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.028 4.028 3 H 0.046 0.954 4 C -0.006 4.006 5 C -0.557 4.557 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.252 5.252 14 C -0.076 4.076 15 C -0.206 4.206 16 C -0.044 4.044 17 H 0.102 0.898 18 N -0.368 5.368 19 C -0.080 4.080 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.051 0.949 23 H 0.039 0.961 24 H 0.038 0.962 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.090 0.910 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.091 2.149 -12.019 12.210 hybrid contribution 0.931 0.561 1.050 1.512 sum 1.022 2.711 -10.968 11.344 Atomic orbital electron populations 1.21761 0.95357 1.01569 1.00079 1.22034 0.95071 0.95164 0.90513 0.95426 1.19152 0.96443 0.95750 0.89221 1.21185 1.31538 1.11506 0.91428 0.92691 1.24990 0.95194 0.95139 0.99014 1.69958 1.35591 1.24019 1.23838 0.86680 0.78861 0.80107 0.82475 1.20224 1.21313 1.20342 1.63739 1.09194 1.50272 1.01971 1.22853 0.88519 1.01993 0.94247 1.23544 0.99251 0.99795 0.98010 1.22754 0.95419 0.98590 0.87673 0.89844 1.58819 1.38809 1.32673 1.06501 1.22799 0.95878 0.97740 0.91545 0.92743 0.91636 0.94923 0.96121 0.96152 0.92990 0.93274 0.90309 0.91173 0.91469 0.84995 0.84587 0.90995 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.91 37.16 0.33 -2.25 16 2 C 0.08 1.71 1.65 -67.71 -0.11 1.60 16 3 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.03 0.83 4.39 -27.88 -0.12 0.71 16 5 C -0.52 -14.60 8.48 -34.44 -0.29 -14.89 16 6 H 0.05 1.50 6.90 -52.48 -0.36 1.14 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.53 -9.87 5.03 -223.28 -1.12 -10.99 16 14 C 0.05 0.91 5.28 -2.30 -0.01 0.90 16 15 C -0.17 -2.21 6.74 -24.60 -0.17 -2.38 16 16 C 0.07 0.91 4.09 -65.90 -0.27 0.64 16 17 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 18 N -0.84 -9.20 9.33 -3.13 -0.03 -9.23 16 19 C 0.05 0.77 5.89 -2.83 -0.02 0.75 16 20 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 21 H 0.06 1.35 6.86 -51.93 -0.36 0.99 16 22 H 0.03 0.56 6.63 -51.93 -0.34 0.21 16 23 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.02 0.56 6.73 -51.93 -0.35 0.21 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.05 0.92 7.51 -51.93 -0.39 0.53 16 27 H 0.08 1.46 8.11 -51.93 -0.42 1.03 16 28 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.34 3.05 9.08 -39.29 -0.36 2.69 16 31 H 0.34 3.46 8.85 -39.29 -0.35 3.11 16 32 H 0.07 1.10 7.92 -51.93 -0.41 0.69 16 33 H 0.06 0.91 6.49 -51.93 -0.34 0.57 16 LS Contribution 261.61 15.07 3.94 3.94 Total: -1.00 -29.76 261.61 -7.60 -37.36 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.35 Total: 1.84 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.76 Total: -13.37 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.42 Total: -46.48 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.76 -7.60 -37.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642843435.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.567 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds