Wall clock time and date at job start Mon Mar 30 2020 02:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.47271 * 2 1 4 4 C 1.53000 * 109.46990 * 119.99830 * 2 1 3 5 5 C 1.50704 * 109.47218 * 295.04132 * 4 2 1 6 6 H 1.08005 * 120.00018 * 4.27810 * 5 4 2 7 7 C 1.37871 * 120.00071 * 184.28092 * 5 4 2 8 8 N 1.31515 * 120.00303 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99974 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47472 * 59.99861 * 9 7 5 11 11 H 1.48508 * 109.47062 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47228 * 299.99749 * 9 7 5 13 13 N 1.46900 * 109.47190 * 239.99526 * 2 1 3 14 14 C 1.47845 * 111.00032 * 183.06996 * 13 2 1 15 15 C 1.54909 * 104.79284 * 213.63881 * 14 13 2 16 16 C 1.55133 * 101.65465 * 37.07228 * 15 14 13 17 17 H 1.09000 * 110.85566 * 82.79826 * 16 15 14 18 18 N 1.46898 * 110.70651 * 205.96003 * 16 15 14 19 19 C 1.47447 * 110.99511 * 62.22946 * 13 2 1 20 20 H 1.09000 * 109.47124 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46760 * 300.00152 * 1 2 3 22 22 H 1.09001 * 109.46861 * 60.00183 * 1 2 3 23 23 H 1.08991 * 109.47312 * 55.04502 * 4 2 1 24 24 H 1.09006 * 109.46928 * 175.04417 * 4 2 1 25 25 H 0.96995 * 120.00621 * 180.02562 * 8 7 5 26 26 H 1.09000 * 110.37313 * 332.46829 * 14 13 2 27 27 H 1.08997 * 110.37191 * 94.80874 * 14 13 2 28 28 H 1.08999 * 110.99158 * 278.97464 * 15 14 13 29 29 H 1.09007 * 110.98668 * 155.16646 * 15 14 13 30 30 H 1.00899 * 111.00612 * 293.60107 * 18 16 15 31 31 H 1.00904 * 110.99854 * 57.55184 * 18 16 15 32 32 H 1.09005 * 109.88765 * 242.66340 * 19 13 2 33 33 H 1.08999 * 109.89376 * 3.68734 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6404 0.0566 2.4767 6 1 1.0205 0.9358 2.3808 7 6 2.0663 -0.3541 3.7220 8 7 2.8209 -1.4249 3.8389 9 14 1.5705 0.6097 5.2434 10 1 0.0900 0.6264 5.3581 11 1 2.1526 -0.0339 6.4486 12 1 2.0742 2.0023 5.1333 13 7 2.0197 -0.6926 -1.1994 14 6 3.4958 -0.7767 -1.1971 15 6 3.8999 -0.6768 -2.6892 16 6 2.8652 0.3467 -3.2263 17 1 3.1874 1.3678 -3.0223 18 7 2.6412 0.1525 -4.6651 19 6 1.5911 0.0062 -2.4249 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6060 -1.7200 1.2948 24 1 3.1264 -0.7987 1.2060 25 1 3.1203 -1.7140 4.7150 26 1 3.9222 0.0522 -0.6322 27 1 3.8209 -1.7292 -0.7788 28 1 3.7919 -1.6398 -3.1883 29 1 4.9160 -0.2963 -2.7939 30 1 3.4717 0.3740 -5.1935 31 1 2.3293 -0.7873 -4.8589 32 1 0.9443 -0.6431 -3.0151 33 1 1.0590 0.9209 -2.1636 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642843435.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:32 Heat of formation + Delta-G solvation = -30.263121 kcal Electronic energy + Delta-G solvation = -13045.494464 eV Core-core repulsion = 10911.406850 eV Total energy + Delta-G solvation = -2134.087614 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.36694 -36.61785 -34.67066 -32.77846 -30.48330 -28.43705 -28.08828 -25.17030 -22.83788 -21.61813 -20.58738 -18.63570 -17.61125 -16.75257 -16.50243 -15.77422 -15.31440 -14.76358 -14.43020 -14.13809 -13.82013 -13.56987 -13.25971 -12.99469 -12.88960 -12.68916 -12.35938 -12.24813 -11.98645 -11.82561 -11.75011 -11.20997 -11.07213 -10.54666 -9.60625 -9.16922 -8.19139 -6.29423 1.39602 1.42663 1.50382 2.40363 3.09069 3.14893 3.51372 3.75340 3.85988 4.13464 4.30141 4.36516 4.41586 4.55351 4.65901 4.71703 4.88459 4.97561 5.02769 5.08200 5.16969 5.27435 5.38132 5.47692 5.68553 5.78576 6.08102 6.16422 6.28213 6.37425 6.63053 6.86560 7.39045 8.93021 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.065005 B = 0.007934 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.630025 B = 3528.276024 C = 3752.178840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.090 3.910 3 H 0.021 0.979 4 C 0.042 3.958 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.964 3.036 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.538 5.538 14 C 0.046 3.954 15 C -0.150 4.150 16 C 0.080 3.920 17 H 0.083 0.917 18 N -0.836 5.836 19 C 0.048 3.952 20 H 0.046 0.954 21 H 0.054 0.946 22 H 0.063 0.937 23 H -0.013 1.013 24 H -0.006 1.006 25 H 0.263 0.737 26 H 0.030 0.970 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.353 0.647 31 H 0.348 0.652 32 H 0.081 0.919 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.335 3.326 -13.372 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.018 4.018 3 H 0.039 0.961 4 C 0.004 3.996 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.788 3.212 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.192 1.192 13 N -0.263 5.263 14 C -0.082 4.082 15 C -0.190 4.190 16 C -0.033 4.033 17 H 0.101 0.899 18 N -0.366 5.366 19 C -0.080 4.080 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.005 0.995 24 H 0.012 0.988 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.167 0.833 31 H 0.162 0.838 32 H 0.099 0.901 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.369 3.302 -13.182 13.595 hybrid contribution 1.094 0.158 1.354 1.748 sum 0.725 3.460 -11.829 12.346 Atomic orbital electron populations 1.21667 0.93884 1.01378 1.01048 1.21744 0.96159 0.94059 0.89872 0.96120 1.18965 0.94596 0.94427 0.91589 1.21588 1.31566 1.11834 0.92423 0.91994 1.25949 0.95024 0.96121 1.02625 1.70103 1.36779 1.25762 1.24757 0.85525 0.78914 0.78764 0.77996 1.19106 1.20920 1.19219 1.63645 1.09936 1.50551 1.02147 1.22838 0.87994 1.00130 0.97224 1.23485 1.00378 1.00703 0.94426 1.22551 0.93657 0.98376 0.88762 0.89855 1.58756 1.39661 1.33304 1.04894 1.22850 0.97262 0.97488 0.90444 0.93466 0.92714 0.91837 0.99467 0.98763 0.92851 0.95172 0.92363 0.90047 0.89534 0.83334 0.83780 0.90086 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 8.91 71.98 0.64 -4.14 16 2 C 0.09 3.90 1.65 44.92 0.07 3.98 16 3 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 4 C 0.04 2.27 4.39 29.85 0.13 2.40 16 5 C -0.54 -30.76 8.48 25.60 0.22 -30.54 16 6 H 0.06 3.39 6.90 -2.91 -0.02 3.37 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.93 -57.72 13.29 21.44 0.28 -57.43 16 9 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 13 N -0.54 -20.10 5.03 -860.33 -4.33 -24.43 16 14 C 0.05 1.64 5.28 86.77 0.46 2.10 16 15 C -0.15 -3.71 6.74 31.98 0.22 -3.49 16 16 C 0.08 1.91 4.09 46.09 0.19 2.10 16 17 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 18 N -0.84 -15.55 9.33 -163.81 -1.53 -17.08 16 19 C 0.05 1.41 5.89 86.65 0.51 1.92 16 20 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 21 H 0.05 2.23 6.86 -2.39 -0.02 2.21 16 22 H 0.06 2.07 6.63 -2.39 -0.02 2.05 16 23 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 24 H -0.01 -0.35 6.73 -2.38 -0.02 -0.37 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 26 H 0.03 1.16 7.51 -2.39 -0.02 1.15 16 27 H 0.06 2.25 8.11 -2.39 -0.02 2.23 16 28 H 0.08 1.86 8.11 -2.39 -0.02 1.84 16 29 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.35 5.09 9.08 -89.69 -0.81 4.27 16 31 H 0.35 5.88 8.85 -89.69 -0.79 5.09 16 32 H 0.08 2.27 7.92 -2.38 -0.02 2.25 16 33 H 0.05 1.63 6.49 -2.39 -0.02 1.61 16 Total: -1.00 -64.71 261.61 -1.16 -65.87 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -0.51 Total: 11.58 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 2.90 Total: -25.19 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -5.57 Total: -98.95 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.71 -1.16 -65.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642843435.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.603 kcal (2) G-P(sol) polarization free energy of solvation -64.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds