Wall clock time and date at job start Mon Mar 30 2020 02:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46823 * 2 1 4 4 C 1.52997 * 109.46715 * 240.00132 * 2 1 3 5 5 C 1.50709 * 109.46671 * 175.41509 * 4 2 1 6 6 H 1.07992 * 119.99991 * 4.87347 * 5 4 2 7 7 C 1.37874 * 119.99640 * 184.87126 * 5 4 2 8 8 N 1.31509 * 120.00466 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99746 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46710 * 60.00316 * 9 7 5 11 11 H 1.48501 * 109.47170 * 180.02562 * 9 7 5 12 12 H 1.48488 * 109.47440 * 300.00299 * 9 7 5 13 13 N 1.46903 * 109.46968 * 120.00158 * 2 1 3 14 14 C 1.46959 * 110.99604 * 295.10209 * 13 2 1 15 15 C 1.53057 * 109.35877 * 183.18986 * 14 13 2 16 16 N 1.46955 * 109.36624 * 301.60000 * 15 14 13 17 17 C 1.46954 * 110.88075 * 59.31980 * 16 15 14 18 18 C 1.46950 * 111.00240 * 58.90058 * 13 2 1 19 19 H 1.09000 * 109.47009 * 59.99604 * 1 2 3 20 20 H 1.09004 * 109.46944 * 300.00363 * 1 2 3 21 21 H 1.08995 * 109.47171 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47127 * 295.41158 * 4 2 1 23 23 H 1.08995 * 109.47454 * 55.41342 * 4 2 1 24 24 H 0.96999 * 120.00488 * 179.97438 * 8 7 5 25 25 H 1.08999 * 109.49172 * 303.15276 * 14 13 2 26 26 H 1.08998 * 109.49123 * 63.22421 * 14 13 2 27 27 H 1.08999 * 109.48427 * 181.63031 * 15 14 13 28 28 H 1.09002 * 109.48609 * 61.56761 * 15 14 13 29 29 H 1.00895 * 111.00034 * 183.19294 * 16 15 14 30 30 H 1.09002 * 109.48617 * 180.71264 * 17 16 15 31 31 H 1.08998 * 109.48860 * 60.64877 * 17 16 15 32 32 H 1.09000 * 109.49445 * 296.78389 * 18 13 2 33 33 H 1.09004 * 109.48721 * 56.84178 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5428 -0.6236 -1.3074 6 1 4.0862 -0.1689 -0.4924 7 6 4.2237 -1.1149 -2.4010 8 7 3.5618 -1.6682 -3.3936 9 14 6.0863 -0.9932 -2.4733 10 1 6.6752 -1.7273 -1.3245 11 1 6.5723 -1.5891 -3.7438 12 1 6.4921 0.4337 -2.4094 13 7 2.0197 -0.6925 1.1995 14 6 1.6464 0.0382 2.4186 15 6 2.2415 -0.6711 3.6375 16 7 1.7490 -2.0549 3.6846 17 6 2.1222 -2.7855 2.4654 18 6 1.5272 -2.0762 1.2466 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.7453 -1.7699 -1.2091 23 1 1.6111 -0.2571 -2.1373 24 1 4.0408 -2.0134 -4.1631 25 1 2.0331 1.0559 2.3655 26 1 0.5605 0.0656 2.5081 27 1 1.9418 -0.1473 4.5451 28 1 3.3288 -0.6745 3.5613 29 1 2.0852 -2.5305 4.5084 30 1 1.7355 -3.8032 2.5186 31 1 3.2081 -2.8129 2.3759 32 1 0.4398 -2.0729 1.3227 33 1 1.8268 -2.6000 0.3389 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642857724.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:41 Heat of formation + Delta-G solvation = 2.278976 kcal Electronic energy + Delta-G solvation = -13368.932601 eV Core-core repulsion = 11236.256118 eV Total energy + Delta-G solvation = -2132.676483 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.83952 -35.25494 -32.57782 -30.56190 -30.01819 -27.28110 -24.98286 -23.25976 -22.68749 -20.04815 -18.46334 -16.43774 -16.11778 -14.80866 -14.54121 -14.33929 -13.93455 -13.72941 -13.38268 -12.86174 -12.04920 -11.82753 -11.68633 -11.42498 -11.10337 -10.92832 -10.63679 -10.57163 -10.34971 -10.16074 -9.80582 -9.12333 -8.97159 -8.28416 -8.24834 -7.41126 -5.87995 -3.86011 3.40815 3.44487 3.48150 4.46535 4.56000 4.62183 5.30541 5.47714 5.48919 5.60312 5.72956 5.83692 5.85824 5.92151 6.03291 6.04992 6.14944 6.28007 6.43873 6.52665 6.65906 6.75897 7.01220 7.20007 7.47942 7.61160 7.73048 7.95126 8.05801 8.14469 8.60063 9.20657 9.75787 11.23876 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037737 B = 0.010803 C = 0.009655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.791687 B = 2591.332711 C = 2899.307968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.069 0.931 4 C 0.029 3.971 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.513 5.513 14 C 0.052 3.948 15 C 0.061 3.939 16 N -0.694 5.694 17 C 0.059 3.941 18 C 0.056 3.944 19 H 0.055 0.945 20 H 0.041 0.959 21 H 0.052 0.948 22 H 0.016 0.984 23 H 0.022 0.978 24 H 0.258 0.742 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.335 0.665 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.032 0.968 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 0.546 11.199 11.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.022 4.022 3 H 0.087 0.913 4 C -0.008 4.008 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.237 5.237 14 C -0.077 4.077 15 C -0.069 4.069 16 N -0.324 5.324 17 C -0.071 4.071 18 C -0.072 4.072 19 H 0.074 0.926 20 H 0.060 0.940 21 H 0.071 0.929 22 H 0.034 0.966 23 H 0.040 0.960 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.151 0.849 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.881 0.619 10.759 11.454 hybrid contribution 1.115 -0.090 0.069 1.120 sum -2.766 0.529 10.828 11.188 Atomic orbital electron populations 1.22510 0.99769 1.01321 1.00633 1.21914 0.90102 0.98408 0.91757 0.91264 1.19226 0.96370 0.95163 0.90082 1.21160 0.91790 1.37191 1.02912 0.92145 1.25015 0.97981 0.95961 0.95942 1.69951 1.35265 1.41014 1.08240 0.86691 0.86408 0.78135 0.76890 1.20461 1.21647 1.20497 1.62282 1.58901 1.01477 1.01061 1.22142 0.97892 0.97289 0.90365 1.21970 0.97701 0.89410 0.97833 1.60562 1.63925 1.03195 1.04760 1.22031 0.98756 0.96543 0.89736 1.22163 0.96655 0.90416 0.97955 0.92612 0.94042 0.92929 0.96579 0.95973 0.93262 0.91150 0.94804 0.91275 0.94461 0.84865 0.91088 0.94187 0.95031 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.30 8.49 37.16 0.32 -2.99 16 2 C 0.09 1.81 2.30 -67.71 -0.16 1.65 16 3 H 0.07 1.48 8.11 -51.93 -0.42 1.06 16 4 C 0.03 0.73 4.26 -27.88 -0.12 0.62 16 5 C -0.49 -13.91 8.83 -34.44 -0.30 -14.21 16 6 H 0.06 1.72 7.73 -52.49 -0.41 1.31 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 9 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.51 -10.11 4.39 -226.48 -0.99 -11.11 16 14 C 0.05 0.85 5.25 -3.76 -0.02 0.83 16 15 C 0.06 0.87 6.72 -3.76 -0.03 0.85 16 16 N -0.69 -9.86 6.90 -113.64 -0.78 -10.64 16 17 C 0.06 0.93 6.72 -3.77 -0.03 0.91 16 18 C 0.06 1.05 4.82 -3.77 -0.02 1.04 16 19 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 20 H 0.04 0.67 6.59 -51.93 -0.34 0.33 16 21 H 0.05 0.95 6.46 -51.93 -0.34 0.61 16 22 H 0.02 0.43 6.13 -51.93 -0.32 0.12 16 23 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 26 H 0.03 0.56 6.59 -51.93 -0.34 0.21 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.33 3.91 8.90 -39.29 -0.35 3.56 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.03 0.58 6.47 -51.93 -0.34 0.24 16 33 H 0.09 1.97 6.08 -51.93 -0.32 1.65 16 LS Contribution 256.63 15.07 3.87 3.87 Total: -1.00 -30.09 256.63 -7.90 -37.99 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.26 Total: -0.73 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -0.45 Total: -9.95 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -1.04 Total: -48.37 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.09 -7.90 -37.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857724.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.274 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds