Wall clock time and date at job start Mon Mar 30 2020 01:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 108.00994 * 2 1 4 4 C 1.54934 * 108.13624 * 243.19272 * 2 1 3 5 5 C 1.54760 * 109.76544 * 196.86192 * 4 2 1 6 6 N 1.44057 * 110.37132 * 321.91163 * 5 4 2 7 7 C 1.46188 * 106.06874 * 99.84439 * 6 5 4 8 8 C 1.46813 * 114.38790 * 267.64590 * 7 6 5 9 9 N 1.43617 * 108.13374 * 116.79738 * 2 1 3 10 10 C 1.36941 * 120.56293 * 31.28044 * 9 2 1 11 11 H 1.08000 * 119.99971 * 30.16329 * 10 9 2 12 12 C 1.38812 * 120.00355 * 210.17194 * 10 9 2 13 13 N 1.31614 * 120.00347 * 214.45506 * 12 10 9 14 14 Si 1.86804 * 119.99833 * 34.45393 * 12 10 9 15 15 H 1.48491 * 109.47307 * 95.29689 * 14 12 10 16 16 H 1.48503 * 109.47142 * 215.29713 * 14 12 10 17 17 H 1.48500 * 109.47087 * 335.29607 * 14 12 10 18 18 H 1.09005 * 109.46903 * 60.00267 * 1 2 3 19 19 H 1.09006 * 109.47345 * 300.00653 * 1 2 3 20 20 H 1.08998 * 109.47728 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47745 * 59.99373 * 3 2 1 22 22 H 1.09000 * 109.47146 * 179.97438 * 3 2 1 23 23 H 1.09000 * 109.47091 * 299.99234 * 3 2 1 24 24 H 1.09002 * 109.43471 * 317.11984 * 4 2 1 25 25 H 1.08997 * 109.43220 * 76.98167 * 4 2 1 26 26 H 1.08996 * 109.41489 * 201.55352 * 5 4 2 27 27 H 1.08997 * 109.02486 * 82.02034 * 5 4 2 28 28 H 1.00893 * 110.99446 * 220.50723 * 6 5 4 29 29 H 1.08994 * 108.49748 * 146.37211 * 7 6 5 30 30 H 1.09004 * 108.49925 * 28.91601 * 7 6 5 31 31 H 1.08994 * 109.96860 * 298.67139 * 8 7 6 32 32 H 1.09002 * 109.96221 * 177.35806 * 8 7 6 33 33 H 0.96992 * 120.00390 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0030 1.4550 0.0000 4 6 2.0122 -0.6640 -1.3141 5 6 3.4997 -1.0697 -1.1803 6 7 4.2269 -0.0717 -0.4383 7 6 4.3445 -0.5868 0.9248 8 6 3.2705 -0.1585 1.8295 9 7 1.9769 -0.6153 1.2183 10 6 1.2360 -1.6016 1.8129 11 1 0.6250 -2.2563 1.2092 12 6 1.2700 -1.7597 3.1915 13 7 1.1813 -2.9625 3.7184 14 14 1.4415 -0.2652 4.2991 15 1 0.0961 0.1775 4.7450 16 1 2.2640 -0.6190 5.4839 17 1 2.1009 0.8337 3.5490 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3634 0.5140 0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 1.6266 1.9595 0.8899 22 1 3.0926 1.4828 0.0005 23 1 1.6268 1.9593 -0.8901 24 1 1.4093 -1.5495 -1.5156 25 1 1.9051 0.0419 -2.1377 26 1 3.9381 -1.1721 -2.1729 27 1 3.5620 -2.0244 -0.6580 28 1 5.1366 0.0888 -0.8440 29 1 5.2974 -0.2565 1.3382 30 1 4.3484 -1.6760 0.8838 31 1 3.2745 0.9273 1.9242 32 1 3.4028 -0.6191 2.8085 33 1 1.2055 -3.0731 4.6817 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642869160.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:29 Heat of formation + Delta-G solvation = 48.419215 kcal Electronic energy + Delta-G solvation = -14127.752248 eV Core-core repulsion = 11997.076556 eV Total energy + Delta-G solvation = -2130.675692 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.89953 -34.81589 -33.06394 -31.29713 -28.42856 -27.11512 -25.99096 -23.27353 -22.25102 -20.47315 -18.02883 -16.38006 -16.02265 -15.49436 -14.49706 -14.01626 -13.58183 -12.92222 -12.60528 -12.35259 -12.11425 -11.98475 -11.41044 -11.07271 -10.90391 -10.67837 -10.47014 -10.38022 -10.09000 -10.01816 -9.85080 -9.49110 -9.19742 -8.35515 -7.83089 -6.76733 -5.95292 -3.14408 3.44467 3.57384 3.63928 4.64905 4.81840 4.91641 5.38204 5.56576 5.74233 5.93785 5.97312 6.09513 6.22206 6.32091 6.39804 6.44679 6.53815 6.61611 6.64578 6.79130 6.80003 6.82059 6.96409 7.10490 7.31512 7.43655 7.53259 7.90747 8.10171 8.48888 9.11354 9.86100 10.34499 11.20566 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037736 B = 0.016476 C = 0.015275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.812643 B = 1698.984446 C = 1832.590796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.214 3.786 3 C -0.165 4.165 4 C -0.121 4.121 5 C 0.059 3.941 6 N -0.657 5.657 7 C 0.035 3.965 8 C 0.142 3.858 9 N -0.588 5.588 10 C -0.258 4.258 11 H 0.078 0.922 12 C 0.035 3.965 13 N -0.891 5.891 14 Si 0.839 3.161 15 H -0.295 1.295 16 H -0.298 1.298 17 H -0.257 1.257 18 H 0.032 0.968 19 H 0.049 0.951 20 H 0.055 0.945 21 H 0.033 0.967 22 H 0.095 0.905 23 H 0.031 0.969 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.327 0.673 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.055 5.917 -7.686 10.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.124 3.876 3 C -0.224 4.224 4 C -0.163 4.163 5 C -0.071 4.071 6 N -0.285 5.285 7 C -0.096 4.096 8 C 0.018 3.982 9 N -0.310 5.310 10 C -0.385 4.385 11 H 0.096 0.904 12 C -0.165 4.165 13 N -0.532 5.532 14 Si 0.667 3.333 15 H -0.223 1.223 16 H -0.225 1.225 17 H -0.182 1.182 18 H 0.051 0.949 19 H 0.068 0.932 20 H 0.075 0.925 21 H 0.052 0.948 22 H 0.113 0.887 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.143 0.857 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.482 6.230 -7.403 10.663 hybrid contribution 0.567 -0.022 0.726 0.921 sum 5.049 6.208 -6.678 10.422 Atomic orbital electron populations 1.22121 0.96896 1.01466 0.99220 1.19169 0.91510 0.90743 0.86172 1.22629 1.04779 0.96391 0.98555 1.22779 0.94756 0.99695 0.99028 1.21940 0.95452 0.93810 0.95937 1.60587 1.20399 1.44344 1.03215 1.21599 0.98743 0.98783 0.90436 1.20807 0.85218 0.97566 0.94649 1.44349 1.19732 1.43594 1.23333 1.18668 1.24456 1.05839 0.89583 0.90441 1.25251 0.98954 0.95705 0.96592 1.70079 1.50764 1.20787 1.11565 0.87460 0.77572 0.87441 0.80871 1.22322 1.22493 1.18152 0.94933 0.93164 0.92550 0.94785 0.88714 0.95005 0.93002 0.93115 0.94140 0.93260 0.85715 0.93957 0.93688 0.93863 0.91662 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 7.44 37.16 0.28 -2.55 16 2 C 0.21 4.39 0.79 -132.33 -0.10 4.29 16 3 C -0.17 -3.12 6.87 37.15 0.26 -2.86 16 4 C -0.12 -2.19 5.42 -24.78 -0.13 -2.33 16 5 C 0.06 0.99 6.16 -4.41 -0.03 0.96 16 6 N -0.66 -10.55 4.02 -118.68 -0.48 -11.03 16 7 C 0.03 0.64 5.69 -7.17 -0.04 0.60 16 8 C 0.14 3.09 3.68 -4.94 -0.02 3.07 16 9 N -0.59 -13.85 2.15 -159.55 -0.34 -14.19 16 10 C -0.26 -7.09 8.60 -15.06 -0.13 -7.22 16 11 H 0.08 2.30 7.07 -52.49 -0.37 1.93 16 12 C 0.03 1.00 4.95 -17.43 -0.09 0.91 16 13 N -0.89 -27.10 13.97 55.49 0.78 -26.32 16 14 Si 0.84 21.58 26.27 -169.99 -4.46 17.12 16 15 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 16 H -0.30 -7.73 7.11 56.52 0.40 -7.32 16 17 H -0.26 -6.29 5.29 56.52 0.30 -6.00 16 18 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 19 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 20 H 0.06 1.21 6.82 -51.93 -0.35 0.86 16 21 H 0.03 0.68 7.98 -51.93 -0.41 0.26 16 22 H 0.09 1.75 4.57 -51.93 -0.24 1.51 16 23 H 0.03 0.53 8.03 -51.93 -0.42 0.12 16 24 H 0.05 0.96 8.01 -51.93 -0.42 0.55 16 25 H 0.05 0.83 7.88 -51.93 -0.41 0.42 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.94 6.61 -51.93 -0.34 0.60 16 28 H 0.33 4.27 8.87 -39.30 -0.35 3.92 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.90 6.70 -51.93 -0.35 0.56 16 31 H 0.04 0.93 5.89 -51.93 -0.31 0.62 16 32 H 0.07 1.54 5.06 -51.93 -0.26 1.27 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 239.88 15.07 3.62 3.62 Total: -1.00 -29.60 239.88 -6.06 -35.66 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.16 Total: 0.27 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -0.01 Total: -5.13 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.05 Total: -51.54 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.46 Total: 17.12 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.60 -6.06 -35.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642869160.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.082 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds