Wall clock time and date at job start Mon Mar 30 2020 01:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48530 * 111.00024 * 2 1 4 4 C 1.54943 * 103.23039 * 159.71921 * 3 2 1 5 5 H 1.08990 * 110.72135 * 80.94292 * 4 3 2 6 6 N 1.46498 * 110.87457 * 204.15759 * 4 3 2 7 7 C 1.36943 * 119.99677 * 268.58398 * 6 4 3 8 8 H 1.07996 * 119.99899 * 0.02562 * 7 6 4 9 9 C 1.38809 * 119.99573 * 180.02562 * 7 6 4 10 10 N 1.31617 * 120.00400 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99911 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47427 * 89.99451 * 11 9 7 13 13 H 1.48502 * 109.46926 * 209.99996 * 11 9 7 14 14 H 1.48508 * 109.46869 * 329.99302 * 11 9 7 15 15 C 1.54605 * 102.91757 * 322.58364 * 4 3 2 16 16 C 1.53000 * 110.30662 * 263.04124 * 15 4 3 17 17 C 1.52993 * 110.38877 * 140.91450 * 15 4 3 18 18 C 1.47907 * 111.00021 * 117.39086 * 2 1 3 19 19 H 1.09002 * 109.47401 * 302.60551 * 1 2 3 20 20 H 1.09001 * 109.46874 * 182.60564 * 1 2 3 21 21 H 1.09004 * 109.46970 * 62.60697 * 1 2 3 22 22 H 1.09002 * 110.66932 * 278.15594 * 3 2 1 23 23 H 1.09006 * 110.66862 * 41.28453 * 3 2 1 24 24 H 0.97000 * 120.00233 * 88.59479 * 6 4 3 25 25 H 0.97000 * 120.00206 * 180.02562 * 10 9 7 26 26 H 1.09000 * 109.46880 * 177.17039 * 16 15 4 27 27 H 1.08996 * 109.47095 * 297.16963 * 16 15 4 28 28 H 1.08994 * 109.47383 * 57.17287 * 16 15 4 29 29 H 1.08998 * 109.47776 * 302.78207 * 17 15 4 30 30 H 1.09000 * 109.47260 * 62.78124 * 17 15 4 31 31 H 1.08998 * 109.47449 * 182.77814 * 17 15 4 32 32 H 1.09003 * 109.91802 * 333.51752 * 18 2 1 33 33 H 1.09002 * 109.91260 * 94.80188 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2107 0.5228 5 1 4.1115 0.8836 -0.2786 6 7 3.9411 2.4521 1.1253 7 6 4.6187 3.3632 0.3597 8 1 4.7900 3.1666 -0.6883 9 6 5.0852 4.5392 0.9307 10 7 4.8760 4.7789 2.2078 11 14 6.0089 5.7823 -0.1138 12 1 5.0452 6.7444 -0.7063 13 1 6.9823 6.5157 0.7347 14 1 6.7335 5.0750 -1.2001 15 6 3.2982 0.1054 1.5932 16 6 3.1793 0.7276 2.9859 17 6 4.4892 -0.8536 1.5408 18 6 1.9991 -0.6353 1.2260 19 1 -0.3634 0.5538 0.8657 20 1 -0.3633 -1.0266 0.0467 21 1 -0.3633 0.4728 -0.9125 22 1 2.0041 1.7977 -1.0095 23 1 1.4237 2.0205 0.6729 24 1 3.7871 2.6287 2.0666 25 1 5.2017 5.6009 2.6068 26 1 3.0233 -0.0596 3.7234 27 1 4.0953 1.2695 3.2211 28 1 2.3347 1.4162 3.0053 29 1 4.5685 -1.2803 0.5410 30 1 5.4039 -0.3102 1.7775 31 1 4.3438 -1.6535 2.2668 32 1 1.2758 -0.5402 2.0360 33 1 2.2122 -1.6873 1.0366 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642877620.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:19 Heat of formation + Delta-G solvation = 14.024672 kcal Electronic energy + Delta-G solvation = -13389.920603 eV Core-core repulsion = 11257.753452 eV Total energy + Delta-G solvation = -2132.167151 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.15564 -34.54875 -33.14872 -30.70773 -27.91193 -26.87643 -26.36100 -24.01572 -22.46774 -20.41931 -18.29182 -17.20725 -15.26539 -15.15383 -14.22204 -14.02285 -13.60166 -13.38744 -12.93736 -12.84323 -12.31948 -11.90089 -11.69419 -11.27190 -11.05899 -10.98751 -10.89177 -10.76363 -10.36029 -10.23602 -10.11637 -9.72416 -9.55790 -8.86515 -8.04120 -6.94526 -5.76486 -3.04788 3.44359 3.49794 3.51295 4.42748 4.64943 5.05498 5.22479 5.35942 5.54888 5.60401 5.68653 5.85035 5.91537 5.96023 6.02826 6.03203 6.11405 6.24076 6.25525 6.41123 6.46342 6.54689 6.70698 6.80220 6.88783 6.96535 7.33961 7.45445 7.73405 8.43223 9.54248 10.12350 10.47116 11.46312 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044026 B = 0.010209 C = 0.009320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.839539 B = 2742.141267 C = 3003.426842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.525 5.525 3 C 0.013 3.987 4 C 0.186 3.814 5 H 0.064 0.936 6 N -0.719 5.719 7 C -0.239 4.239 8 H 0.071 0.929 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C -0.086 4.086 16 C -0.135 4.135 17 C -0.128 4.128 18 C 0.047 3.953 19 H 0.023 0.977 20 H 0.060 0.940 21 H 0.064 0.936 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.388 0.612 25 H 0.255 0.745 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.039 0.961 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 -9.867 -0.944 11.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.249 5.249 3 C -0.117 4.117 4 C 0.074 3.926 5 H 0.082 0.918 6 N -0.361 5.361 7 C -0.370 4.370 8 H 0.089 0.911 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.218 1.218 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.088 4.088 16 C -0.193 4.193 17 C -0.186 4.186 18 C -0.081 4.081 19 H 0.042 0.958 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.091 0.909 23 H 0.061 0.939 24 H 0.225 0.775 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.184 -10.035 -1.523 11.397 hybrid contribution -0.029 1.306 0.479 1.391 sum -5.213 -8.729 -1.044 10.221 Atomic orbital electron populations 1.22471 0.89100 1.00946 1.00555 1.64692 1.07050 1.16897 1.36302 1.24090 0.98970 0.87609 1.01079 1.21109 0.91838 0.86486 0.93120 0.91814 1.42643 1.65651 1.17177 1.10612 1.19307 1.27166 0.97497 0.93062 0.91120 1.24734 1.01740 0.98448 0.96035 1.69657 1.51582 1.26484 1.10558 0.86192 0.79343 0.81526 0.79158 1.21786 1.21827 1.20717 1.21648 0.94189 0.96183 0.96752 1.21769 1.02927 0.99798 0.94789 1.21761 0.97923 0.98005 1.00907 1.22962 0.95615 0.98687 0.90870 0.95838 0.92118 0.91739 0.90929 0.93933 0.77478 0.93537 0.93747 0.90875 0.92971 0.92775 0.92171 0.93584 0.94311 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.40 60.07 0.56 0.82 16 2 N -0.53 -8.74 5.55 -238.70 -1.33 -10.07 16 3 C 0.01 0.25 6.25 -1.90 -0.01 0.24 16 4 C 0.19 3.87 3.14 -66.06 -0.21 3.66 16 5 H 0.06 1.38 7.81 -51.93 -0.41 0.98 16 6 N -0.72 -18.04 4.98 -51.62 -0.26 -18.30 16 7 C -0.24 -6.65 9.96 -15.06 -0.15 -6.80 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 11 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 C -0.09 -1.50 0.95 -153.15 -0.14 -1.64 16 16 C -0.14 -2.38 7.02 37.16 0.26 -2.12 16 17 C -0.13 -2.01 8.22 37.15 0.31 -1.71 16 18 C 0.05 0.73 6.03 -2.75 -0.02 0.72 16 19 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 23 H 0.04 0.87 7.96 -51.93 -0.41 0.46 16 24 H 0.39 10.18 5.13 -40.82 -0.21 9.97 16 25 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.45 6.98 -51.93 -0.36 1.09 16 28 H 0.05 0.96 7.97 -51.93 -0.41 0.55 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.58 7.27 -51.93 -0.38 0.20 16 33 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16 LS Contribution 262.86 15.07 3.96 3.96 Total: -1.00 -29.28 262.86 -6.92 -36.19 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.50 Total: 5.47 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 0.50 Total: -7.31 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.86 Total: -55.75 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.28 -6.92 -36.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642877620.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.218 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds