Wall clock time and date at job start Mon Mar 30 2020 01:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48530 * 111.00024 * 2 1 4 4 C 1.54943 * 103.23039 * 159.71921 * 3 2 1 5 5 H 1.08990 * 110.72135 * 80.94292 * 4 3 2 6 6 N 1.46498 * 110.87457 * 204.15759 * 4 3 2 7 7 C 1.36943 * 119.99677 * 268.58398 * 6 4 3 8 8 H 1.07996 * 119.99899 * 0.02562 * 7 6 4 9 9 C 1.38809 * 119.99573 * 180.02562 * 7 6 4 10 10 N 1.31617 * 120.00400 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99911 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47427 * 89.99451 * 11 9 7 13 13 H 1.48502 * 109.46926 * 209.99996 * 11 9 7 14 14 H 1.48508 * 109.46869 * 329.99302 * 11 9 7 15 15 C 1.54605 * 102.91757 * 322.58364 * 4 3 2 16 16 C 1.53000 * 110.30662 * 263.04124 * 15 4 3 17 17 C 1.52993 * 110.38877 * 140.91450 * 15 4 3 18 18 C 1.47907 * 111.00021 * 117.39086 * 2 1 3 19 19 H 1.09002 * 109.47401 * 302.60551 * 1 2 3 20 20 H 1.09001 * 109.46874 * 182.60564 * 1 2 3 21 21 H 1.09004 * 109.46970 * 62.60697 * 1 2 3 22 22 H 1.09002 * 110.66932 * 278.15594 * 3 2 1 23 23 H 1.09006 * 110.66862 * 41.28453 * 3 2 1 24 24 H 0.97000 * 120.00233 * 88.59479 * 6 4 3 25 25 H 0.97000 * 120.00206 * 180.02562 * 10 9 7 26 26 H 1.09000 * 109.46880 * 177.17039 * 16 15 4 27 27 H 1.08996 * 109.47095 * 297.16963 * 16 15 4 28 28 H 1.08994 * 109.47383 * 57.17287 * 16 15 4 29 29 H 1.08998 * 109.47776 * 302.78207 * 17 15 4 30 30 H 1.09000 * 109.47260 * 62.78124 * 17 15 4 31 31 H 1.08998 * 109.47449 * 182.77814 * 17 15 4 32 32 H 1.09003 * 109.91802 * 333.51752 * 18 2 1 33 33 H 1.09002 * 109.91260 * 94.80188 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2107 0.5228 5 1 4.1115 0.8836 -0.2786 6 7 3.9411 2.4521 1.1253 7 6 4.6187 3.3632 0.3597 8 1 4.7900 3.1666 -0.6883 9 6 5.0852 4.5392 0.9307 10 7 4.8760 4.7789 2.2078 11 14 6.0089 5.7823 -0.1138 12 1 5.0452 6.7444 -0.7063 13 1 6.9823 6.5157 0.7347 14 1 6.7335 5.0750 -1.2001 15 6 3.2982 0.1054 1.5932 16 6 3.1793 0.7276 2.9859 17 6 4.4892 -0.8536 1.5408 18 6 1.9991 -0.6353 1.2260 19 1 -0.3634 0.5538 0.8657 20 1 -0.3633 -1.0266 0.0467 21 1 -0.3633 0.4728 -0.9125 22 1 2.0041 1.7977 -1.0095 23 1 1.4237 2.0205 0.6729 24 1 3.7871 2.6287 2.0666 25 1 5.2017 5.6009 2.6068 26 1 3.0233 -0.0596 3.7234 27 1 4.0953 1.2695 3.2211 28 1 2.3347 1.4162 3.0053 29 1 4.5685 -1.2803 0.5410 30 1 5.4039 -0.3102 1.7775 31 1 4.3438 -1.6535 2.2668 32 1 1.2758 -0.5402 2.0360 33 1 2.2122 -1.6873 1.0366 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642877620.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:19 Heat of formation + Delta-G solvation = -6.297942 kcal Electronic energy + Delta-G solvation = -13390.801858 eV Core-core repulsion = 11257.753452 eV Total energy + Delta-G solvation = -2133.048406 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.60662 -36.22986 -34.80436 -32.63866 -29.49585 -28.28204 -27.68876 -25.86933 -24.04079 -21.90369 -19.86692 -19.17655 -16.93226 -16.61615 -16.04194 -15.59021 -15.04652 -14.93736 -14.43213 -14.25785 -13.84071 -13.44781 -13.08526 -12.90909 -12.76586 -12.62316 -12.40656 -12.25697 -12.07737 -11.99759 -11.63809 -11.46844 -11.23527 -10.87762 -9.37360 -8.99600 -7.94697 -5.22721 1.46936 1.48189 1.56818 2.55322 3.13491 3.37313 3.66232 3.91301 3.97364 4.22840 4.35431 4.49569 4.51073 4.56460 4.62979 4.72916 4.81569 4.88120 4.98332 4.99639 5.09189 5.14711 5.22315 5.30550 5.43001 5.51505 5.53358 5.93152 6.16312 6.29086 7.34775 8.11074 8.35546 9.28784 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044026 B = 0.010209 C = 0.009320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.839539 B = 2742.141267 C = 3003.426842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.528 5.528 3 C 0.024 3.976 4 C 0.176 3.824 5 H 0.052 0.948 6 N -0.730 5.730 7 C -0.241 4.241 8 H 0.073 0.927 9 C -0.074 4.074 10 N -0.969 5.969 11 Si 0.971 3.029 12 H -0.288 1.288 13 H -0.295 1.295 14 H -0.270 1.270 15 C -0.084 4.084 16 C -0.128 4.128 17 C -0.124 4.124 18 C 0.052 3.948 19 H 0.021 0.979 20 H 0.087 0.913 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.025 0.975 24 H 0.380 0.620 25 H 0.251 0.749 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.067 -11.500 -1.481 13.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.252 5.252 3 C -0.107 4.107 4 C 0.065 3.935 5 H 0.070 0.930 6 N -0.371 5.371 7 C -0.373 4.373 8 H 0.091 0.909 9 C -0.267 4.267 10 N -0.620 5.620 11 Si 0.801 3.199 12 H -0.216 1.216 13 H -0.222 1.222 14 H -0.195 1.195 15 C -0.085 4.085 16 C -0.185 4.185 17 C -0.181 4.181 18 C -0.076 4.076 19 H 0.040 0.960 20 H 0.105 0.895 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.043 0.957 24 H 0.216 0.784 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.818 -11.713 -2.091 13.245 hybrid contribution 0.111 1.731 0.630 1.846 sum -5.707 -9.982 -1.462 11.591 Atomic orbital electron populations 1.22568 0.87109 1.02711 1.00803 1.64705 1.08948 1.14522 1.37035 1.23780 0.97821 0.89264 0.99863 1.21303 0.92122 0.86027 0.93998 0.92988 1.42784 1.65838 1.18315 1.10208 1.19657 1.26341 0.97935 0.93367 0.90922 1.25518 1.03413 1.00497 0.97230 1.69810 1.53190 1.26862 1.12144 0.85168 0.77960 0.79075 0.77741 1.21569 1.22179 1.19493 1.21641 0.96251 0.95425 0.95198 1.21681 1.00678 1.00165 0.95995 1.21723 0.96030 0.98082 1.02260 1.22998 0.94496 0.99375 0.90769 0.96001 0.89478 0.91231 0.91853 0.95684 0.78419 0.94057 0.90512 0.93881 0.94507 0.92059 0.94301 0.90616 0.93218 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.40 127.69 1.20 1.62 16 2 N -0.53 -16.35 5.55 -909.12 -5.05 -21.40 16 3 C 0.02 0.90 6.25 86.65 0.54 1.44 16 4 C 0.18 7.29 3.14 46.20 0.15 7.43 16 5 H 0.05 2.26 7.81 -2.39 -0.02 2.24 16 6 N -0.73 -37.42 4.98 -317.24 -1.58 -39.00 16 7 C -0.24 -13.60 9.96 84.03 0.84 -12.76 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 10 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 11 Si 0.97 46.71 29.55 68.60 2.03 48.73 16 12 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 13 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 15 C -0.08 -2.78 0.95 -51.30 -0.05 -2.83 16 16 C -0.13 -4.39 7.02 71.98 0.51 -3.89 16 17 C -0.12 -3.61 8.22 71.98 0.59 -3.02 16 18 C 0.05 1.45 6.03 86.44 0.52 1.97 16 19 H 0.02 0.55 8.00 -2.39 -0.02 0.53 16 20 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 21 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 22 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 23 H 0.02 1.03 7.96 -2.38 -0.02 1.01 16 24 H 0.38 20.57 5.13 -92.71 -0.48 20.09 16 25 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 26 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.04 1.73 6.98 -2.39 -0.02 1.72 16 28 H 0.04 1.35 7.97 -2.39 -0.02 1.33 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.31 7.27 -2.39 -0.02 1.29 16 33 H 0.10 2.29 7.68 -2.39 -0.02 2.27 16 Total: -1.00 -62.82 262.86 1.03 -61.79 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.59 Total: 23.14 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 4.76 Total: -13.89 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -6.34 Total: -119.77 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -62.82 1.03 -61.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642877620.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.492 kcal (2) G-P(sol) polarization free energy of solvation -62.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds