Wall clock time and date at job start Mon Mar 30 2020 02:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.72532 * 2 1 4 4 C 1.54933 * 110.66761 * 236.90245 * 2 1 3 5 5 H 1.08999 * 110.72531 * 322.50758 * 4 2 1 6 6 N 1.46898 * 110.72429 * 85.79419 * 4 2 1 7 7 C 1.46901 * 111.00084 * 199.95256 * 6 4 2 8 8 C 1.50700 * 109.47379 * 179.97438 * 7 6 4 9 9 H 1.08000 * 119.99618 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00202 * 180.02562 * 8 7 6 11 11 N 1.31506 * 119.99710 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99614 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47068 * 90.00441 * 12 10 8 14 14 H 1.48508 * 109.46486 * 210.00187 * 12 10 8 15 15 H 1.48498 * 109.47080 * 329.99859 * 12 10 8 16 16 C 1.54594 * 102.91997 * 204.15353 * 4 2 1 17 17 C 1.53991 * 105.14285 * 21.95481 * 16 4 2 18 18 N 1.47905 * 107.22505 * 1.12969 * 17 16 4 19 19 C 1.46897 * 111.00050 * 214.25344 * 18 17 16 20 20 H 1.08998 * 109.47058 * 183.09576 * 1 2 3 21 21 H 1.09005 * 109.47365 * 303.09824 * 1 2 3 22 22 H 1.09000 * 109.47132 * 63.09943 * 1 2 3 23 23 H 1.00895 * 111.00091 * 323.90789 * 6 4 2 24 24 H 1.08996 * 109.47277 * 300.00503 * 7 6 4 25 25 H 1.09007 * 109.46891 * 59.99818 * 7 6 4 26 26 H 0.97001 * 119.99468 * 179.97438 * 11 10 8 27 27 H 1.09005 * 110.30718 * 263.04287 * 16 4 2 28 28 H 1.09001 * 110.39460 * 140.91666 * 16 4 2 29 29 H 1.09002 * 109.91707 * 120.58029 * 17 16 4 30 30 H 1.09002 * 109.91668 * 241.67819 * 17 16 4 31 31 H 1.09003 * 109.47065 * 59.87544 * 19 18 17 32 32 H 1.08999 * 109.47271 * 179.87278 * 19 18 17 33 33 H 1.09003 * 109.47401 * 299.87547 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0769 -0.7916 -1.2144 5 1 1.4562 -1.6644 -1.4171 6 7 2.1661 0.0713 -2.3999 7 6 2.2182 -0.7289 -3.6308 8 6 2.3084 0.1885 -4.8229 9 1 2.3258 1.2590 -4.6804 10 6 2.3688 -0.3386 -6.0955 11 7 2.4481 0.4620 -7.1358 12 14 2.3395 -2.1901 -6.3418 13 1 0.9344 -2.6480 -6.4870 14 1 3.1029 -2.5385 -7.5671 15 1 2.9582 -2.8555 -5.1672 16 6 3.4853 -1.2197 -0.7421 17 6 3.4279 -1.1647 0.7957 18 7 2.0559 -0.7567 1.1685 19 6 2.0647 0.0750 2.3793 20 1 -0.3633 -1.0261 0.0555 21 1 -0.3634 0.5612 0.8609 22 1 -0.3633 0.4650 -0.9165 23 1 1.4005 0.7279 -2.4276 24 1 3.0928 -1.3788 -3.6049 25 1 1.3163 -1.3364 -3.7076 26 1 2.4910 0.0911 -8.0310 27 1 4.2374 -0.5258 -1.1177 28 1 3.7062 -2.2334 -1.0764 29 1 3.6486 -2.1480 1.2110 30 1 4.1465 -0.4346 1.1682 31 1 2.6611 0.9698 2.2011 32 1 1.0437 0.3629 2.6298 33 1 2.4958 -0.4904 3.2054 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642878079.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:19 Heat of formation + Delta-G solvation = -21.136343 kcal Electronic energy + Delta-G solvation = -12963.259312 eV Core-core repulsion = 10829.567465 eV Total energy + Delta-G solvation = -2133.691847 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.31336 -36.61339 -34.54240 -32.39453 -31.96883 -28.89166 -25.95541 -25.76223 -23.42718 -21.24243 -21.20880 -18.97823 -17.19529 -16.70922 -16.27227 -15.73322 -15.36666 -15.13137 -14.75051 -14.37515 -14.00654 -13.82070 -13.28273 -13.12419 -12.78765 -12.63846 -12.30319 -12.22705 -12.09380 -11.86646 -11.75040 -11.46740 -11.30825 -10.83575 -9.42763 -9.22587 -8.32027 -6.36602 1.33247 1.35228 1.46667 2.32434 2.91574 3.02133 3.52620 3.66513 3.78542 4.15616 4.23583 4.39353 4.48316 4.53118 4.60112 4.75029 4.82274 4.84729 4.87142 4.98348 5.05155 5.06083 5.14284 5.21465 5.32847 5.52198 5.81047 6.00132 6.10276 6.53071 6.63665 6.74115 7.28551 8.84702 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.058070 B = 0.008021 C = 0.007689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.061294 B = 3489.858458 C = 3640.549402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.066 3.934 3 H 0.054 0.946 4 C 0.079 3.921 5 H 0.042 0.958 6 N -0.678 5.678 7 C 0.179 3.821 8 C -0.529 4.529 9 H 0.038 0.962 10 C 0.009 3.991 11 N -0.946 5.946 12 Si 0.950 3.050 13 H -0.266 1.266 14 H -0.279 1.279 15 H -0.252 1.252 16 C -0.125 4.125 17 C 0.044 3.956 18 N -0.526 5.526 19 C 0.017 3.983 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.337 0.663 24 H 0.024 0.976 25 H -0.016 1.016 26 H 0.268 0.732 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.076 0.924 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 -4.576 17.519 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.042 4.042 3 H 0.072 0.928 4 C -0.032 4.032 5 H 0.060 0.940 6 N -0.309 5.309 7 C 0.050 3.950 8 C -0.567 4.567 9 H 0.056 0.944 10 C -0.188 4.188 11 N -0.586 5.586 12 Si 0.773 3.227 13 H -0.191 1.191 14 H -0.204 1.204 15 H -0.176 1.176 16 C -0.164 4.164 17 C -0.084 4.084 18 N -0.251 5.251 19 C -0.132 4.132 20 H 0.079 0.921 21 H 0.090 0.910 22 H 0.074 0.926 23 H 0.155 0.845 24 H 0.042 0.958 25 H 0.002 0.998 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.094 -4.949 17.515 18.234 hybrid contribution -0.274 0.040 -0.974 1.013 sum -1.368 -4.909 16.541 17.308 Atomic orbital electron populations 1.21663 0.92856 1.02475 1.02035 1.22836 0.96485 0.95545 0.89374 0.92761 1.22505 0.96231 0.94520 0.89906 0.93981 1.60484 1.50315 1.18609 1.01513 1.19742 0.94568 0.92861 0.87830 1.21331 1.50413 0.94068 0.90906 0.94371 1.25862 0.94098 1.03456 0.95424 1.70046 1.52011 1.37403 0.99181 0.85680 0.79125 0.79494 0.78425 1.19059 1.20435 1.17571 1.22450 0.97057 1.01443 0.95425 1.22821 0.89679 1.01737 0.94143 1.64765 1.19184 1.37767 1.03382 1.22579 1.02550 0.95592 0.92455 0.92142 0.90997 0.92561 0.84492 0.95822 0.99831 0.92288 0.91724 0.91548 0.89203 0.92988 0.95477 0.90485 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.46 71.98 0.68 -2.58 16 2 C 0.07 1.85 2.36 45.21 0.11 1.96 16 3 H 0.05 1.60 7.97 -2.39 -0.02 1.58 16 4 C 0.08 2.69 2.79 46.12 0.13 2.82 16 5 H 0.04 1.50 7.81 -2.39 -0.02 1.48 16 6 N -0.68 -28.32 6.29 -489.37 -3.08 -31.40 16 7 C 0.18 8.74 4.37 85.56 0.37 9.11 16 8 C -0.53 -31.17 9.87 25.60 0.25 -30.92 16 9 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 10 C 0.01 0.55 5.47 84.66 0.46 1.01 16 11 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 12 Si 0.95 44.63 27.47 68.60 1.88 46.51 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 15 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 16 C -0.12 -3.86 6.61 31.47 0.21 -3.65 16 17 C 0.04 1.08 6.69 86.44 0.58 1.66 16 18 N -0.53 -13.02 5.26 -883.51 -4.64 -17.66 16 19 C 0.02 0.31 9.32 127.69 1.19 1.50 16 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.07 1.47 7.67 -2.38 -0.02 1.45 16 22 H 0.06 1.44 7.91 -2.39 -0.02 1.42 16 23 H 0.34 13.75 8.25 -89.70 -0.74 13.01 16 24 H 0.02 1.18 7.19 -2.39 -0.02 1.16 16 25 H -0.02 -0.76 7.52 -2.38 -0.02 -0.78 16 26 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 27 H 0.06 2.19 8.05 -2.38 -0.02 2.18 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 1.18 7.73 -2.39 -0.02 1.16 16 31 H 0.03 0.52 8.01 -2.39 -0.02 0.50 16 32 H 0.08 1.32 7.62 -2.39 -0.02 1.30 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -64.97 265.31 -1.29 -66.26 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.27 Total: 14.70 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 3.98 Total: -19.08 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -7.42 Total: -108.40 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -64.97 -1.29 -66.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642878079.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.127 kcal (2) G-P(sol) polarization free energy of solvation -64.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds