Wall clock time and date at job start Mon Mar 30 2020 02:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.90879 * 2 1 4 4 C 1.53996 * 109.91934 * 121.10224 * 2 1 3 5 5 H 1.08998 * 110.30727 * 239.79015 * 4 2 1 6 6 N 1.46903 * 110.30782 * 1.85750 * 4 2 1 7 7 C 1.46893 * 110.99924 * 204.99611 * 6 4 2 8 8 C 1.50706 * 109.47176 * 179.97438 * 7 6 4 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47216 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 119.99848 * 12 10 8 15 15 H 1.48501 * 109.47057 * 239.99829 * 12 10 8 16 16 C 1.54597 * 105.14038 * 120.77139 * 4 2 1 17 17 C 1.54945 * 102.92046 * 21.95911 * 16 4 2 18 18 N 1.47903 * 110.07892 * 238.79040 * 2 1 3 19 19 C 1.46900 * 110.99742 * 94.71184 * 18 2 1 20 20 H 1.09011 * 109.47108 * 298.89754 * 1 2 3 21 21 H 1.08996 * 109.47470 * 58.89639 * 1 2 3 22 22 H 1.08994 * 109.47293 * 178.90035 * 1 2 3 23 23 H 1.00904 * 110.99923 * 81.04693 * 6 4 2 24 24 H 1.09001 * 109.46739 * 60.00281 * 7 6 4 25 25 H 1.09000 * 109.47767 * 300.00540 * 7 6 4 26 26 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 27 27 H 1.08997 * 110.72583 * 140.31174 * 16 4 2 28 28 H 1.09000 * 110.72849 * 263.60373 * 16 4 2 29 29 H 1.08995 * 110.66628 * 204.14836 * 17 16 4 30 30 H 1.09005 * 110.80938 * 81.08300 * 17 16 4 31 31 H 1.08998 * 109.47354 * 59.99995 * 19 18 2 32 32 H 1.09008 * 109.47084 * 179.97438 * 19 18 2 33 33 H 1.08995 * 109.47483 * 299.99788 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0546 -0.7479 1.2397 5 1 2.6671 -0.0847 1.8505 6 7 0.9337 -1.2761 2.0288 7 6 1.3169 -1.4510 3.4360 8 6 0.1442 -1.9925 4.2124 9 1 -0.7919 -2.1876 3.7104 10 6 0.2664 -2.2388 5.5634 11 7 1.4063 -2.0008 6.1747 12 14 -1.1870 -2.9107 6.5256 13 1 -2.3445 -3.0901 5.6129 14 1 -0.8214 -4.2192 7.1252 15 1 -1.5505 -1.9564 7.6037 16 6 2.9100 -1.9075 0.6797 17 6 3.2732 -1.4142 -0.7435 18 7 2.0377 -0.7198 -1.1881 19 6 2.3243 0.2131 -2.2861 20 1 -0.3634 0.4967 0.8998 21 1 -0.3634 0.5308 -0.8799 22 1 -0.3633 -1.0274 -0.0197 23 1 0.5915 -2.1407 1.6371 24 1 1.6156 -0.4894 3.8534 25 1 2.1505 -2.1502 3.5015 26 1 1.4924 -2.1745 7.1252 27 1 3.8088 -2.0487 1.2799 28 1 2.3281 -2.8280 0.6320 29 1 3.4973 -2.2570 -1.3973 30 1 4.1135 -0.7206 -0.7102 31 1 3.0777 0.9322 -1.9647 32 1 2.6965 -0.3424 -3.1470 33 1 1.4116 0.7416 -2.5613 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642878081.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:24 Heat of formation + Delta-G solvation = 3.874159 kcal Electronic energy + Delta-G solvation = -12998.754019 eV Core-core repulsion = 10866.146709 eV Total energy + Delta-G solvation = -2132.607310 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.09984 -34.81741 -32.53243 -30.95020 -30.08036 -26.45747 -24.60492 -24.44572 -21.70180 -20.93094 -19.04155 -16.52944 -15.75328 -15.14325 -14.58744 -14.39846 -13.61906 -13.50708 -13.10593 -12.62949 -12.19190 -12.03045 -11.70640 -11.42432 -11.13611 -11.12467 -10.79631 -10.73006 -10.59988 -10.33269 -10.24083 -9.84073 -9.12633 -8.47256 -8.26096 -7.21030 -6.01895 -4.03456 3.32178 3.39442 3.44847 4.19291 4.44649 4.94763 4.98213 5.20734 5.34322 5.45119 5.46582 5.50230 5.63723 5.81614 5.87646 5.90987 6.06954 6.15828 6.27793 6.43022 6.43729 6.52575 7.01209 7.13007 7.27629 7.29070 7.46481 7.81830 8.15435 8.43785 8.64763 9.06771 9.61653 11.09286 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068138 B = 0.007535 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.831232 B = 3715.011167 C = 3936.523287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.068 3.932 3 H 0.044 0.956 4 C 0.081 3.919 5 H 0.074 0.926 6 N -0.675 5.675 7 C 0.193 3.807 8 C -0.512 4.512 9 H 0.063 0.937 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.898 3.102 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.284 1.284 16 C -0.150 4.150 17 C 0.037 3.963 18 N -0.520 5.520 19 C 0.019 3.981 20 H 0.070 0.930 21 H 0.030 0.970 22 H 0.060 0.940 23 H 0.333 0.667 24 H 0.026 0.974 25 H -0.014 1.014 26 H 0.260 0.740 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.632 2.647 -12.742 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.040 4.040 3 H 0.062 0.938 4 C -0.031 4.031 5 H 0.093 0.907 6 N -0.304 5.304 7 C 0.066 3.934 8 C -0.550 4.550 9 H 0.081 0.919 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.726 3.274 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.190 4.190 17 C -0.091 4.091 18 N -0.245 5.245 19 C -0.130 4.130 20 H 0.088 0.912 21 H 0.049 0.951 22 H 0.079 0.921 23 H 0.151 0.849 24 H 0.044 0.956 25 H 0.004 0.996 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.025 2.903 -12.639 13.125 hybrid contribution 0.654 -0.505 0.842 1.180 sum 2.679 2.398 -11.797 12.333 Atomic orbital electron populations 1.21373 0.92881 1.02339 0.99940 1.22493 0.97540 0.94962 0.89036 0.93816 1.22358 0.91826 0.95299 0.93611 0.90738 1.60768 1.31149 1.34122 1.04373 1.19584 0.95364 0.95985 0.82441 1.21238 0.98257 1.42191 0.93337 0.91891 1.24992 0.96016 0.95848 0.97788 1.69979 1.24536 1.49142 1.10222 0.86437 0.82632 0.78440 0.79872 1.19633 1.21138 1.21045 1.23257 1.00872 0.99895 0.95001 1.23149 0.91276 0.98072 0.96639 1.64716 1.25928 1.26697 1.07149 1.22470 1.00306 0.95228 0.95023 0.91158 0.95134 0.92051 0.84928 0.95629 0.99624 0.93027 0.91397 0.90681 0.90648 0.94210 0.95862 0.91807 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 8.54 37.16 0.32 -1.41 16 2 C 0.07 1.09 3.08 -66.64 -0.21 0.88 16 3 H 0.04 0.68 7.73 -51.93 -0.40 0.28 16 4 C 0.08 1.47 3.29 -66.35 -0.22 1.25 16 5 H 0.07 1.42 7.82 -51.93 -0.41 1.01 16 6 N -0.67 -14.35 4.46 -106.56 -0.47 -14.82 16 7 C 0.19 5.04 5.29 -4.98 -0.03 5.01 16 8 C -0.51 -14.52 9.32 -34.44 -0.32 -14.84 16 9 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 10 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 12 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 C -0.15 -2.41 6.72 -24.87 -0.17 -2.58 16 17 C 0.04 0.50 6.56 -1.89 -0.01 0.49 16 18 N -0.52 -7.53 5.19 -230.78 -1.20 -8.73 16 19 C 0.02 0.22 9.40 60.06 0.56 0.78 16 20 H 0.07 1.23 7.86 -51.92 -0.41 0.82 16 21 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.06 1.04 7.50 -51.93 -0.39 0.65 16 23 H 0.33 6.97 7.70 -39.29 -0.30 6.67 16 24 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 25 H -0.01 -0.39 8.14 -51.93 -0.42 -0.81 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.07 1.25 7.56 -51.93 -0.39 0.86 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.51 7.96 -51.93 -0.41 0.10 16 31 H 0.02 0.26 8.00 -51.93 -0.42 -0.16 16 32 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 266.63 15.07 4.02 4.02 Total: -1.00 -29.34 266.63 -7.74 -37.07 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.63 Total: 0.88 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -0.17 Total: -8.94 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.94 Total: -49.82 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.34 -7.74 -37.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642878081.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.947 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds