Wall clock time and date at job start Mon Mar 30 2020 02:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.88554 * 2 1 4 4 C 1.54908 * 111.00655 * 236.08019 * 2 1 3 5 5 N 1.47429 * 104.83166 * 278.93270 * 4 2 1 6 6 C 1.36936 * 125.64930 * 155.90988 * 5 4 2 7 7 H 1.08000 * 119.99735 * 179.97438 * 6 5 4 8 8 C 1.38813 * 120.00071 * 359.97351 * 6 5 4 9 9 N 1.31620 * 119.99978 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00217 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47591 * 89.99709 * 10 8 6 12 12 H 1.48493 * 109.47344 * 210.00081 * 10 8 6 13 13 H 1.48501 * 109.46900 * 329.99799 * 10 8 6 14 14 C 1.47315 * 108.73268 * 335.71274 * 5 4 2 15 15 C 1.54316 * 107.12219 * 1.30409 * 14 5 4 16 16 H 1.09003 * 110.72060 * 263.52387 * 15 14 5 17 17 C 1.53006 * 110.72298 * 140.42755 * 15 14 5 18 18 C 1.52999 * 109.47221 * 68.84120 * 17 15 14 19 19 N 1.46896 * 109.47179 * 180.02562 * 18 17 15 20 20 H 1.08999 * 109.47314 * 296.11712 * 1 2 3 21 21 H 1.08997 * 109.47215 * 56.12169 * 1 2 3 22 22 H 1.09002 * 109.46853 * 176.12050 * 1 2 3 23 23 H 1.09002 * 110.36735 * 37.76688 * 4 2 1 24 24 H 1.08995 * 110.36919 * 160.09203 * 4 2 1 25 25 H 0.97007 * 119.99894 * 179.97438 * 9 8 6 26 26 H 1.08999 * 110.06686 * 241.86631 * 14 5 4 27 27 H 1.09008 * 109.84469 * 120.61475 * 14 5 4 28 28 H 1.09001 * 109.46848 * 188.84214 * 17 15 14 29 29 H 1.08999 * 109.46574 * 308.84180 * 17 15 14 30 30 H 1.09005 * 109.47045 * 300.00285 * 18 17 15 31 31 H 1.09003 * 109.47054 * 60.00048 * 18 17 15 32 32 H 1.00901 * 110.99961 * 56.04548 * 19 18 17 33 33 H 1.00899 * 111.00257 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8070 -1.2000 5 7 2.0140 -2.2161 -0.7726 6 6 1.9462 -3.3005 -1.6060 7 1 1.8975 -4.2971 -1.1926 8 6 1.9402 -3.1189 -2.9822 9 7 1.9991 -1.9043 -3.4860 10 14 1.8471 -4.5981 -4.1192 11 1 0.4245 -4.9145 -4.4044 12 1 2.5502 -4.2904 -5.3904 13 1 2.4926 -5.7654 -3.4666 14 6 2.0324 -2.2655 0.6997 15 6 2.0862 -0.8075 1.2024 16 1 3.1123 -0.5132 1.4230 17 6 1.1966 -0.6264 2.4340 18 6 1.8044 -1.3814 3.6178 19 7 0.9500 -1.2080 4.8000 20 1 -0.3634 0.4524 0.9227 21 1 -0.3633 0.5728 -0.8532 22 1 -0.3633 -1.0253 -0.0695 23 1 1.4672 -0.6469 -2.0834 24 1 3.1182 -0.5237 -1.4023 25 1 1.9953 -1.7774 -4.4477 26 1 2.9118 -2.8093 1.0446 27 1 1.1272 -2.7505 1.0650 28 1 1.1246 0.4337 2.6775 29 1 0.2017 -1.0195 2.2245 30 1 1.8765 -2.4415 3.3743 31 1 2.7993 -0.9883 3.8272 32 1 0.0049 -1.5060 4.6100 33 1 1.3301 -1.6980 5.5959 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642878814.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:45 Heat of formation + Delta-G solvation = -11.265417 kcal Electronic energy + Delta-G solvation = -13235.581269 eV Core-core repulsion = 11102.317457 eV Total energy + Delta-G solvation = -2133.263812 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.97671 -36.36352 -34.70676 -32.33178 -31.26991 -28.18276 -27.08802 -25.51252 -23.13234 -21.45832 -20.00915 -18.87591 -16.86657 -16.75130 -16.58481 -15.85598 -15.25302 -15.10229 -14.24354 -13.96068 -13.75938 -13.29576 -13.18318 -13.09611 -12.78973 -12.50804 -12.41564 -12.03700 -11.87955 -11.67333 -11.27293 -11.18641 -11.03774 -10.73802 -9.57604 -8.86200 -7.76845 -5.20966 1.44625 1.46858 1.55470 2.49174 3.31707 3.59241 3.77881 3.85906 3.99370 4.19154 4.37878 4.47898 4.61101 4.67687 4.68750 4.80264 4.86446 5.02814 5.12495 5.22542 5.28491 5.38284 5.40191 5.46242 5.55445 5.71299 5.86191 6.25114 6.33333 6.64360 7.11819 7.79957 8.45004 9.24856 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053694 B = 0.009172 C = 0.008354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.343992 B = 3052.042571 C = 3350.918170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 H 0.084 0.916 4 C 0.158 3.842 5 N -0.625 5.625 6 C -0.240 4.240 7 H 0.078 0.922 8 C -0.068 4.068 9 N -0.949 5.949 10 Si 0.980 3.020 11 H -0.284 1.284 12 H -0.293 1.293 13 H -0.271 1.271 14 C 0.140 3.860 15 C -0.083 4.083 16 H 0.074 0.926 17 C -0.091 4.091 18 C 0.063 3.937 19 N -0.854 5.854 20 H 0.077 0.923 21 H 0.044 0.956 22 H 0.032 0.968 23 H 0.073 0.927 24 H -0.022 1.022 25 H 0.246 0.754 26 H 0.013 0.987 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.021 0.979 31 H 0.071 0.929 32 H 0.345 0.655 33 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 2.372 12.119 12.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.126 4.126 3 H 0.102 0.898 4 C 0.033 3.967 5 N -0.351 5.351 6 C -0.369 4.369 7 H 0.096 0.904 8 C -0.261 4.261 9 N -0.599 5.599 10 Si 0.808 3.192 11 H -0.211 1.211 12 H -0.219 1.219 13 H -0.196 1.196 14 C 0.015 3.985 15 C -0.102 4.102 16 H 0.092 0.908 17 C -0.130 4.130 18 C -0.068 4.068 19 N -0.385 5.385 20 H 0.095 0.905 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.091 0.909 24 H -0.004 1.004 25 H 0.056 0.944 26 H 0.031 0.969 27 H 0.041 0.959 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.157 0.843 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.187 3.077 11.854 12.441 hybrid contribution 0.170 -1.879 -1.102 2.185 sum -2.017 1.198 10.752 11.005 Atomic orbital electron populations 1.21550 0.94271 1.00509 1.01379 1.22491 0.96587 0.98406 0.95162 0.89793 1.21777 0.95883 0.82580 0.96440 1.44873 1.86281 1.02831 1.01092 1.19467 1.42294 0.86981 0.88184 0.90443 1.25634 1.02813 0.99550 0.98071 1.70078 1.58596 1.20530 1.10703 0.85052 0.77527 0.78575 0.78024 1.21119 1.21933 1.19636 1.21542 0.96991 0.96162 0.83814 1.22095 0.99550 0.93951 0.94649 0.90759 1.21457 0.98190 1.01344 0.91961 1.21758 0.97195 0.97576 0.90296 1.58740 1.06472 1.66384 1.06879 0.90464 0.93685 0.94908 0.90882 1.00390 0.94384 0.96871 0.95907 0.90389 0.92030 0.96085 0.91038 0.84274 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 8.16 71.98 0.59 -3.60 16 2 C -0.11 -4.06 3.54 -9.40 -0.03 -4.10 16 3 H 0.08 2.84 8.14 -2.39 -0.02 2.83 16 4 C 0.16 8.10 5.35 86.85 0.46 8.56 16 5 N -0.62 -33.35 3.39 -691.24 -2.34 -35.69 16 6 C -0.24 -13.92 10.28 84.03 0.86 -13.06 16 7 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 8 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 9 N -0.95 -58.00 10.09 21.65 0.22 -57.78 16 10 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 14 C 0.14 5.94 5.82 86.67 0.50 6.45 16 15 C -0.08 -2.84 2.81 -9.61 -0.03 -2.86 16 16 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 17 C -0.09 -2.44 3.71 30.60 0.11 -2.33 16 18 C 0.06 1.48 6.65 86.30 0.57 2.05 16 19 N -0.85 -16.81 9.62 -186.72 -1.80 -18.61 16 20 H 0.08 2.15 6.79 -2.39 -0.02 2.14 16 21 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.03 1.30 7.92 -2.39 -0.02 1.28 16 23 H 0.07 4.24 5.79 -2.39 -0.01 4.22 16 24 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 25 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 26 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.02 0.96 7.73 -2.38 -0.02 0.94 16 28 H 0.08 1.94 8.12 -2.39 -0.02 1.92 16 29 H 0.06 1.69 6.79 -2.39 -0.02 1.68 16 30 H 0.02 0.53 7.58 -2.38 -0.02 0.51 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.34 6.16 8.99 -89.69 -0.81 5.36 16 33 H 0.35 5.53 9.08 -89.69 -0.81 4.71 16 Total: -1.00 -65.63 259.55 1.09 -64.54 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -0.53 Total: 11.28 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 3.51 Total: -12.40 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -3.92 Total: -112.09 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -65.63 1.09 -64.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642878814.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.273 kcal (2) G-P(sol) polarization free energy of solvation -65.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds