Wall clock time and date at job start Mon Mar 30 2020 02:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.47397 * 2 1 4 4 C 1.52993 * 109.47211 * 239.99365 * 2 1 3 5 5 C 1.53935 * 113.73495 * 80.97079 * 4 2 1 6 6 N 1.48297 * 86.06261 * 138.13217 * 5 4 2 7 7 C 1.47956 * 90.75459 * 335.30615 * 6 5 4 8 8 N 1.46903 * 109.46627 * 119.99698 * 2 1 3 9 9 C 1.46898 * 111.00137 * 58.95181 * 8 2 1 10 10 C 1.46906 * 110.99885 * 294.99935 * 8 2 1 11 11 C 1.50698 * 109.47132 * 190.00039 * 10 8 2 12 12 H 1.07994 * 119.99816 * 0.02562 * 11 10 8 13 13 C 1.37882 * 119.99867 * 179.97438 * 11 10 8 14 14 N 1.31509 * 119.99760 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99601 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47540 * 60.00547 * 15 13 11 17 17 H 1.48503 * 109.46644 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47370 * 299.99926 * 15 13 11 19 19 H 1.09006 * 109.46253 * 54.07618 * 1 2 3 20 20 H 1.08995 * 109.46934 * 174.06900 * 1 2 3 21 21 H 1.08995 * 109.47065 * 294.07596 * 1 2 3 22 22 H 1.09008 * 112.94026 * 309.40008 * 4 2 1 23 23 H 1.09003 * 113.75402 * 252.50020 * 5 4 2 24 24 H 1.08994 * 113.76067 * 23.86073 * 5 4 2 25 25 H 1.00901 * 111.00816 * 88.19876 * 6 5 4 26 26 H 1.09001 * 113.76581 * 270.37528 * 7 6 5 27 27 H 1.09004 * 113.86157 * 139.02496 * 7 6 5 28 28 H 1.09000 * 109.47215 * 60.00084 * 9 8 2 29 29 H 1.09004 * 109.47202 * 180.02562 * 9 8 2 30 30 H 1.09001 * 109.47250 * 300.00004 * 9 8 2 31 31 H 1.09004 * 109.47145 * 310.00170 * 10 8 2 32 32 H 1.09001 * 109.46962 * 70.00033 * 10 8 2 33 33 H 0.97009 * 119.99632 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0381 0.1548 -2.5148 6 7 3.3595 -0.4496 -2.8113 7 6 3.5742 -0.7326 -1.3751 8 7 2.0196 -0.6925 1.1995 9 6 1.5282 -2.0760 1.2462 10 6 1.6486 0.0393 2.4181 11 6 2.3677 -0.5569 3.6007 12 1 3.0340 -1.3952 3.4609 13 6 2.1757 -0.0314 4.8609 14 7 1.3647 0.9898 5.0309 15 14 3.0676 -0.7700 6.3266 16 1 4.5340 -0.6696 6.1158 17 1 2.6924 -0.0303 7.5584 18 1 2.6848 -2.1975 6.4710 19 1 -0.3632 0.6030 -0.8323 20 1 -0.3633 -1.0221 -0.1062 21 1 -0.3633 0.4192 0.9382 22 1 1.5810 -1.6997 -1.3920 23 1 1.2610 -0.1109 -3.2315 24 1 2.0806 1.2242 -2.3086 25 1 3.2564 -1.3047 -3.3370 26 1 4.0650 0.0778 -0.8362 27 1 4.0238 -1.7063 -1.1800 28 1 1.8761 -2.6151 0.3650 29 1 1.9051 -2.5654 2.1443 30 1 0.4384 -2.0741 1.2641 31 1 1.9297 1.0872 2.3125 32 1 0.5721 -0.0343 2.5725 33 1 1.2293 1.3593 5.9176 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686269724.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:18 Heat of formation + Delta-G solvation = 13.547316 kcal Electronic energy + Delta-G solvation = -13138.558287 eV Core-core repulsion = 11006.370436 eV Total energy + Delta-G solvation = -2132.187851 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.83667 -38.15921 -34.80891 -31.87580 -29.13689 -27.62326 -26.92378 -26.55488 -23.96580 -21.50614 -20.35252 -18.56553 -17.40662 -16.80400 -16.27408 -15.80011 -15.45150 -14.61744 -14.42913 -14.16307 -13.96307 -13.47872 -13.22784 -12.99101 -12.94535 -12.72040 -12.49887 -12.25165 -12.05699 -12.03275 -11.51475 -11.40676 -11.14186 -10.60080 -9.38788 -8.88407 -8.19726 -6.29794 1.40357 1.43609 1.51445 2.40166 3.12217 3.16505 3.26692 3.76528 3.92473 4.23207 4.33544 4.43011 4.55454 4.62258 4.73860 4.78690 4.82388 4.89870 4.93132 5.05387 5.09539 5.11692 5.20533 5.32465 5.38951 5.43166 5.66013 6.08188 6.38516 6.51235 6.70814 6.87596 7.39900 8.90888 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.056071 B = 0.008360 C = 0.007922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.244925 B = 3348.455079 C = 3533.561275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.086 3.914 3 H 0.059 0.941 4 C -0.136 4.136 5 C 0.030 3.970 6 N -0.671 5.671 7 C 0.038 3.962 8 N -0.538 5.538 9 C 0.040 3.960 10 C 0.211 3.789 11 C -0.525 4.525 12 H 0.063 0.937 13 C 0.000 4.000 14 N -0.936 5.936 15 Si 0.968 3.032 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.267 1.267 19 H 0.076 0.924 20 H 0.060 0.940 21 H 0.028 0.972 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.344 0.656 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.013 0.987 31 H -0.005 1.005 32 H -0.033 1.033 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 -4.884 -12.483 13.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.024 4.024 3 H 0.077 0.923 4 C -0.156 4.156 5 C -0.100 4.100 6 N -0.298 5.298 7 C -0.092 4.092 8 N -0.261 5.261 9 C -0.109 4.109 10 C 0.084 3.916 11 C -0.563 4.563 12 H 0.081 0.919 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.793 3.207 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.192 1.192 19 H 0.095 0.905 20 H 0.079 0.921 21 H 0.047 0.953 22 H 0.116 0.884 23 H 0.111 0.889 24 H 0.107 0.893 25 H 0.159 0.841 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.013 0.987 32 H -0.015 1.015 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.851 -4.155 -12.610 13.304 hybrid contribution -1.381 -0.655 1.558 2.182 sum -0.529 -4.811 -11.051 12.065 Atomic orbital electron populations 1.22335 0.97637 1.02106 1.01298 1.21760 0.92783 0.97352 0.90508 0.92274 1.24216 0.97276 0.99890 0.94219 1.23710 0.91863 0.99615 0.94838 1.65137 1.25915 1.27955 1.10815 1.23359 0.95065 1.01506 0.89299 1.62224 1.59079 1.02697 1.02080 1.22206 0.96740 0.90242 1.01678 1.19316 0.92397 0.92517 0.87359 1.21496 1.26279 1.16186 0.92346 0.91920 1.25920 0.96227 0.95458 1.02160 1.70086 1.38331 1.25476 1.23724 0.85451 0.78993 0.78563 0.77706 1.19382 1.20874 1.19204 0.90485 0.92097 0.95254 0.88439 0.88908 0.89299 0.84081 0.90406 0.90729 0.90451 0.93026 0.96814 0.98665 1.01546 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.64 8.43 71.99 0.61 -5.03 16 2 C 0.09 2.95 2.09 44.92 0.09 3.04 16 3 H 0.06 2.22 7.88 -2.39 -0.02 2.20 16 4 C -0.14 -3.55 2.53 -10.15 -0.03 -3.58 16 5 C 0.03 0.66 8.46 86.34 0.73 1.39 16 6 N -0.67 -15.65 8.56 -523.31 -4.48 -20.13 16 7 C 0.04 1.02 8.28 86.41 0.72 1.74 16 8 N -0.54 -22.83 4.55 -901.58 -4.10 -26.93 16 9 C 0.04 1.49 8.68 127.69 1.11 2.60 16 10 C 0.21 11.32 4.17 85.56 0.36 11.67 16 11 C -0.52 -30.09 8.46 25.60 0.22 -29.88 16 12 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 13 C 0.00 0.01 5.46 84.66 0.46 0.47 16 14 N -0.94 -57.10 13.29 21.45 0.28 -56.81 16 15 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 20 H 0.06 1.82 6.72 -2.39 -0.02 1.81 16 21 H 0.03 1.13 6.48 -2.39 -0.02 1.11 16 22 H 0.10 2.31 7.14 -2.38 -0.02 2.29 16 23 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.09 2.10 7.99 -2.39 -0.02 2.08 16 25 H 0.34 6.43 8.89 -89.69 -0.80 5.63 16 26 H 0.08 2.50 8.10 -2.39 -0.02 2.48 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.08 2.35 6.59 -2.39 -0.02 2.34 16 29 H 0.05 2.14 6.76 -2.38 -0.02 2.12 16 30 H 0.01 0.51 6.42 -2.39 -0.02 0.49 16 31 H 0.00 -0.28 8.00 -2.38 -0.02 -0.30 16 32 H -0.03 -1.92 6.80 -2.39 -0.02 -1.94 16 33 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -63.81 261.45 -1.72 -65.53 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.29 Total: 9.17 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 4.26 Total: -17.58 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -8.30 Total: -103.88 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -63.81 -1.72 -65.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686269724.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.082 kcal (2) G-P(sol) polarization free energy of solvation -63.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds