Wall clock time and date at job start Mon Mar 30 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47319 * 2 1 4 4 C 1.53001 * 109.47046 * 120.00229 * 2 1 3 5 5 C 1.53939 * 113.73151 * 280.18490 * 4 2 1 6 6 N 1.47962 * 86.18090 * 221.92018 * 5 4 2 7 7 C 1.47957 * 90.76356 * 24.69111 * 6 5 4 8 8 N 1.46898 * 109.47452 * 239.99655 * 2 1 3 9 9 C 1.46905 * 111.00041 * 306.05118 * 8 2 1 10 10 C 1.46901 * 110.99936 * 70.00216 * 8 2 1 11 11 C 1.50705 * 109.47355 * 170.00391 * 10 8 2 12 12 H 1.07994 * 119.99513 * 0.02562 * 11 10 8 13 13 C 1.37874 * 119.99728 * 179.97438 * 11 10 8 14 14 N 1.31519 * 119.99806 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00342 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47199 * 89.99909 * 15 13 11 17 17 H 1.48510 * 109.46946 * 210.00142 * 15 13 11 18 18 H 1.48503 * 109.47239 * 329.99449 * 15 13 11 19 19 H 1.09000 * 109.46795 * 66.13948 * 1 2 3 20 20 H 1.08998 * 109.47186 * 306.14477 * 1 2 3 21 21 H 1.09000 * 109.47618 * 186.13929 * 1 2 3 22 22 H 1.09001 * 112.94316 * 51.88773 * 4 2 1 23 23 H 1.09004 * 113.75942 * 336.23850 * 5 4 2 24 24 H 1.09001 * 113.75877 * 107.60118 * 5 4 2 25 25 H 1.00902 * 110.99830 * 271.79508 * 6 5 4 26 26 H 1.08996 * 113.75853 * 220.99782 * 7 6 5 27 27 H 1.08996 * 113.76031 * 89.62429 * 7 6 5 28 28 H 1.09002 * 109.47101 * 59.99429 * 9 8 2 29 29 H 1.09003 * 109.47179 * 179.97438 * 9 8 2 30 30 H 1.09000 * 109.46835 * 299.99612 * 9 8 2 31 31 H 1.09006 * 109.46881 * 290.00383 * 10 8 2 32 32 H 1.08999 * 109.47215 * 49.99833 * 10 8 2 33 33 H 0.97000 * 120.00308 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 2.0115 0.1463 2.5205 6 7 3.3375 -0.4343 2.8271 7 6 3.5726 -0.7053 1.3916 8 7 2.0197 -0.6925 -1.1994 9 6 1.4343 -2.0355 -1.3077 10 6 1.7530 0.0971 -2.4090 11 6 2.4775 -0.5164 -3.5794 12 1 3.0758 -1.4044 -3.4387 13 6 2.3756 0.0553 -4.8299 14 7 3.0074 -0.4804 -5.8514 15 14 1.3401 1.5909 -5.0732 16 1 2.1836 2.7950 -4.8643 17 1 0.7912 1.6042 -6.4531 18 1 0.2220 1.5940 -4.0959 19 1 -0.3633 0.4157 -0.9399 20 1 -0.3633 0.6061 0.8298 21 1 -0.3634 -1.0217 0.1099 22 1 1.5974 -1.7088 1.3801 23 1 2.0365 1.2177 2.3217 24 1 1.2333 -0.1380 3.2288 25 1 3.2443 -1.2941 3.3469 26 1 4.0417 -1.6699 1.1980 27 1 4.0542 0.1170 0.8626 28 1 0.3490 -1.9549 -1.3693 29 1 1.8133 -2.5259 -2.2044 30 1 1.7058 -2.6221 -0.4301 31 1 0.6814 0.1052 -2.6087 32 1 2.1025 1.1188 -2.2604 33 1 2.9360 -0.0780 -6.7311 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686269725.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:20 Heat of formation + Delta-G solvation = 40.355557 kcal Electronic energy + Delta-G solvation = -13177.598552 eV Core-core repulsion = 11046.573193 eV Total energy + Delta-G solvation = -2131.025358 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.70691 -36.78266 -32.66226 -30.53027 -27.72961 -26.53960 -25.71908 -25.02572 -21.94184 -20.08047 -19.05414 -16.93882 -16.37057 -15.00469 -14.79659 -14.16292 -13.90090 -13.30306 -13.14893 -12.89389 -12.53679 -12.21026 -12.02162 -11.60777 -11.40328 -11.05535 -10.91358 -10.71433 -10.47369 -10.34110 -10.07276 -9.80195 -9.28564 -8.56536 -8.35433 -7.30687 -6.05068 -4.02034 3.27998 3.35374 3.36948 4.18732 4.41767 4.49338 4.87336 5.17350 5.28662 5.38596 5.48492 5.52359 5.70992 5.83247 5.86452 5.96472 6.08183 6.09096 6.14676 6.22574 6.31187 6.44487 6.55879 6.68988 6.90210 7.02765 7.39995 7.60726 7.92677 8.07776 8.66966 9.03704 9.56941 11.08126 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050742 B = 0.009100 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.680798 B = 3076.228416 C = 3216.195039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.085 3.915 3 H 0.076 0.924 4 C -0.143 4.143 5 C 0.022 3.978 6 N -0.669 5.669 7 C 0.040 3.960 8 N -0.521 5.521 9 C 0.034 3.966 10 C 0.161 3.839 11 C -0.508 4.508 12 H 0.080 0.920 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.874 3.126 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.269 1.269 19 H 0.057 0.943 20 H 0.050 0.950 21 H 0.054 0.946 22 H 0.084 0.916 23 H 0.094 0.906 24 H 0.065 0.935 25 H 0.330 0.670 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.015 0.985 29 H 0.077 0.923 30 H 0.045 0.955 31 H -0.010 1.010 32 H 0.022 0.978 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.476 0.164 13.631 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.026 4.026 3 H 0.095 0.905 4 C -0.163 4.163 5 C -0.109 4.109 6 N -0.295 5.295 7 C -0.089 4.089 8 N -0.244 5.244 9 C -0.115 4.115 10 C 0.035 3.965 11 C -0.546 4.546 12 H 0.098 0.902 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.702 3.298 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.194 1.194 19 H 0.076 0.924 20 H 0.069 0.931 21 H 0.073 0.927 22 H 0.102 0.898 23 H 0.113 0.887 24 H 0.084 0.916 25 H 0.144 0.856 26 H 0.088 0.912 27 H 0.119 0.881 28 H 0.033 0.967 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.007 0.993 32 H 0.040 0.960 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.396 0.775 13.700 14.136 hybrid contribution -2.158 0.112 -0.739 2.284 sum -5.554 0.887 12.961 14.129 Atomic orbital electron populations 1.22442 0.98540 1.01556 1.01730 1.21730 0.91996 0.97934 0.90903 0.90547 1.24202 0.97713 0.99284 0.95077 1.23658 0.91535 1.00293 0.95412 1.65108 1.24350 1.27750 1.12278 1.23475 0.95027 1.02249 0.88178 1.62138 1.57300 1.02731 1.02245 1.22266 0.96252 0.91384 1.01567 1.20182 0.94592 0.93528 0.88200 1.21049 1.29512 1.13476 0.90579 0.90161 1.24901 0.95463 0.97056 0.95958 1.69895 1.43168 1.40660 1.00307 0.86876 0.81255 0.84219 0.77494 1.20138 1.21232 1.19351 0.92350 0.93063 0.92711 0.89777 0.88749 0.91613 0.85628 0.91188 0.88083 0.96665 0.90408 0.93665 0.99281 0.96024 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.78 8.30 37.15 0.31 -2.47 16 2 C 0.08 1.39 2.04 -67.72 -0.14 1.25 16 3 H 0.08 1.30 7.80 -51.93 -0.41 0.89 16 4 C -0.14 -1.95 2.75 -89.68 -0.25 -2.19 16 5 C 0.02 0.26 8.43 -2.76 -0.02 0.23 16 6 N -0.67 -8.46 8.55 -117.01 -1.00 -9.46 16 7 C 0.04 0.57 8.31 -2.77 -0.02 0.55 16 8 N -0.52 -10.60 4.54 -236.32 -1.07 -11.67 16 9 C 0.03 0.64 8.63 60.07 0.52 1.16 16 10 C 0.16 3.88 3.37 -4.97 -0.02 3.87 16 11 C -0.51 -14.41 9.01 -34.44 -0.31 -14.72 16 12 H 0.08 2.48 7.37 -52.49 -0.39 2.09 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 15 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 19 H 0.06 0.99 6.67 -51.93 -0.35 0.65 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.80 6.71 -51.93 -0.35 0.45 16 22 H 0.08 1.11 7.16 -51.93 -0.37 0.74 16 23 H 0.09 1.14 8.01 -51.93 -0.42 0.73 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.33 3.56 8.89 -39.29 -0.35 3.21 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.10 1.59 8.10 -51.93 -0.42 1.17 16 28 H 0.01 0.27 6.35 -51.93 -0.33 -0.06 16 29 H 0.08 1.66 6.76 -51.93 -0.35 1.31 16 30 H 0.04 0.73 6.72 -51.93 -0.35 0.38 16 31 H -0.01 -0.25 5.98 -51.93 -0.31 -0.57 16 32 H 0.02 0.53 7.36 -51.93 -0.38 0.15 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 258.18 15.07 3.89 3.89 Total: -1.00 -29.92 258.18 -7.31 -37.23 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.20 Total: 0.47 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -0.03 Total: -10.47 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -1.30 Total: -48.03 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.92 -7.31 -37.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686269725.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.585 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds