Wall clock time and date at job start Mon Mar 30 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47319 * 2 1 4 4 C 1.53001 * 109.47046 * 120.00229 * 2 1 3 5 5 C 1.53939 * 113.73151 * 280.18490 * 4 2 1 6 6 N 1.47962 * 86.18090 * 221.92018 * 5 4 2 7 7 C 1.47957 * 90.76356 * 24.69111 * 6 5 4 8 8 N 1.46898 * 109.47452 * 239.99655 * 2 1 3 9 9 C 1.46905 * 111.00041 * 306.05118 * 8 2 1 10 10 C 1.46901 * 110.99936 * 70.00216 * 8 2 1 11 11 C 1.50705 * 109.47355 * 170.00391 * 10 8 2 12 12 H 1.07994 * 119.99513 * 0.02562 * 11 10 8 13 13 C 1.37874 * 119.99728 * 179.97438 * 11 10 8 14 14 N 1.31519 * 119.99806 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00342 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47199 * 89.99909 * 15 13 11 17 17 H 1.48510 * 109.46946 * 210.00142 * 15 13 11 18 18 H 1.48503 * 109.47239 * 329.99449 * 15 13 11 19 19 H 1.09000 * 109.46795 * 66.13948 * 1 2 3 20 20 H 1.08998 * 109.47186 * 306.14477 * 1 2 3 21 21 H 1.09000 * 109.47618 * 186.13929 * 1 2 3 22 22 H 1.09001 * 112.94316 * 51.88773 * 4 2 1 23 23 H 1.09004 * 113.75942 * 336.23850 * 5 4 2 24 24 H 1.09001 * 113.75877 * 107.60118 * 5 4 2 25 25 H 1.00902 * 110.99830 * 271.79508 * 6 5 4 26 26 H 1.08996 * 113.75853 * 220.99782 * 7 6 5 27 27 H 1.08996 * 113.76031 * 89.62429 * 7 6 5 28 28 H 1.09002 * 109.47101 * 59.99429 * 9 8 2 29 29 H 1.09003 * 109.47179 * 179.97438 * 9 8 2 30 30 H 1.09000 * 109.46835 * 299.99612 * 9 8 2 31 31 H 1.09006 * 109.46881 * 290.00383 * 10 8 2 32 32 H 1.08999 * 109.47215 * 49.99833 * 10 8 2 33 33 H 0.97000 * 120.00308 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 2.0115 0.1463 2.5205 6 7 3.3375 -0.4343 2.8271 7 6 3.5726 -0.7053 1.3916 8 7 2.0197 -0.6925 -1.1994 9 6 1.4343 -2.0355 -1.3077 10 6 1.7530 0.0971 -2.4090 11 6 2.4775 -0.5164 -3.5794 12 1 3.0758 -1.4044 -3.4387 13 6 2.3756 0.0553 -4.8299 14 7 3.0074 -0.4804 -5.8514 15 14 1.3401 1.5909 -5.0732 16 1 2.1836 2.7950 -4.8643 17 1 0.7912 1.6042 -6.4531 18 1 0.2220 1.5940 -4.0959 19 1 -0.3633 0.4157 -0.9399 20 1 -0.3633 0.6061 0.8298 21 1 -0.3634 -1.0217 0.1099 22 1 1.5974 -1.7088 1.3801 23 1 2.0365 1.2177 2.3217 24 1 1.2333 -0.1380 3.2288 25 1 3.2443 -1.2941 3.3469 26 1 4.0417 -1.6699 1.1980 27 1 4.0542 0.1170 0.8626 28 1 0.3490 -1.9549 -1.3693 29 1 1.8133 -2.5259 -2.2044 30 1 1.7058 -2.6221 -0.4301 31 1 0.6814 0.1052 -2.6087 32 1 2.1025 1.1188 -2.2604 33 1 2.9360 -0.0780 -6.7311 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686269725.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:20 Heat of formation + Delta-G solvation = 16.533300 kcal Electronic energy + Delta-G solvation = -13178.631562 eV Core-core repulsion = 11046.573193 eV Total energy + Delta-G solvation = -2132.058369 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.85176 -38.24860 -34.77793 -32.08436 -29.55622 -27.67693 -26.91266 -26.53337 -23.62163 -21.43202 -20.38634 -19.04354 -17.40168 -16.66456 -16.43538 -15.71850 -15.46038 -14.80599 -14.57406 -14.30725 -14.02376 -13.49140 -13.25979 -13.09994 -12.97424 -12.76096 -12.41640 -12.19585 -12.11754 -11.83194 -11.52103 -11.45913 -11.24955 -10.78153 -9.39124 -8.89958 -8.28688 -6.31440 1.33415 1.34300 1.44869 2.33348 3.04370 3.11720 3.24303 3.75618 3.90429 4.21712 4.33236 4.43172 4.51494 4.62099 4.68466 4.78594 4.82185 4.87422 4.89112 4.92505 5.01202 5.12909 5.13569 5.26416 5.32083 5.41218 5.55008 6.01760 6.41166 6.50088 6.70210 6.75711 7.32217 8.87990 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050742 B = 0.009100 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.680798 B = 3076.228416 C = 3216.195039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.083 3.917 3 H 0.069 0.931 4 C -0.136 4.136 5 C 0.032 3.968 6 N -0.673 5.673 7 C 0.035 3.965 8 N -0.537 5.537 9 C 0.040 3.960 10 C 0.173 3.827 11 C -0.515 4.515 12 H 0.038 0.962 13 C 0.007 3.993 14 N -0.949 5.949 15 Si 0.946 3.054 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.252 1.252 19 H 0.036 0.964 20 H 0.079 0.921 21 H 0.061 0.939 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.343 0.657 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.024 0.976 29 H 0.042 0.958 30 H 0.075 0.925 31 H -0.011 1.011 32 H 0.022 0.978 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.090 1.140 15.703 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.027 4.027 3 H 0.087 0.913 4 C -0.156 4.156 5 C -0.098 4.098 6 N -0.300 5.300 7 C -0.095 4.095 8 N -0.260 5.260 9 C -0.108 4.108 10 C 0.046 3.954 11 C -0.553 4.553 12 H 0.056 0.944 13 C -0.190 4.190 14 N -0.590 5.590 15 Si 0.769 3.231 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.176 1.176 19 H 0.055 0.945 20 H 0.098 0.902 21 H 0.080 0.920 22 H 0.113 0.887 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.158 0.842 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.007 0.993 32 H 0.040 0.960 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.014 1.741 15.810 16.677 hybrid contribution -1.581 -0.278 -1.327 2.083 sum -6.595 1.463 14.483 15.981 Atomic orbital electron populations 1.22366 0.97028 1.02452 1.01753 1.21832 0.93219 0.97539 0.90074 0.91280 1.24201 0.96912 0.99986 0.94450 1.23662 0.91731 0.99858 0.94574 1.65054 1.25098 1.28654 1.11190 1.23370 0.95482 1.01339 0.89293 1.62023 1.58568 1.03169 1.02245 1.22185 0.96483 0.90826 1.01292 1.19895 0.93578 0.93514 0.88394 1.21307 1.29118 1.12284 0.92604 0.94382 1.25843 0.96890 1.00779 0.95527 1.70052 1.45180 1.42747 1.01004 0.85737 0.79830 0.79658 0.77852 1.19080 1.20713 1.17584 0.94496 0.90203 0.91988 0.88677 0.88934 0.88949 0.84171 0.91337 0.90263 0.95793 0.93928 0.90675 0.99346 0.96021 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.82 8.30 71.98 0.60 -4.22 16 2 C 0.08 2.54 2.04 44.91 0.09 2.64 16 3 H 0.07 2.23 7.80 -2.39 -0.02 2.21 16 4 C -0.14 -3.32 2.75 -10.14 -0.03 -3.35 16 5 C 0.03 0.65 8.43 86.41 0.73 1.37 16 6 N -0.67 -15.23 8.55 -524.10 -4.48 -19.71 16 7 C 0.04 0.94 8.31 86.41 0.72 1.66 16 8 N -0.54 -21.55 4.54 -901.59 -4.09 -25.65 16 9 C 0.04 1.50 8.63 127.69 1.10 2.60 16 10 C 0.17 8.32 3.37 85.56 0.29 8.60 16 11 C -0.51 -30.04 9.01 25.60 0.23 -29.81 16 12 H 0.04 2.48 7.37 -2.91 -0.02 2.45 16 13 C 0.01 0.39 5.47 84.65 0.46 0.86 16 14 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 15 Si 0.95 44.49 27.47 68.60 1.88 46.37 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 19 H 0.04 1.16 6.67 -2.39 -0.02 1.14 16 20 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.06 1.59 6.71 -2.39 -0.02 1.57 16 22 H 0.10 2.16 7.16 -2.39 -0.02 2.14 16 23 H 0.09 1.94 8.01 -2.38 -0.02 1.92 16 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.34 6.33 8.89 -89.69 -0.80 5.54 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.08 2.48 8.10 -2.39 -0.02 2.46 16 28 H 0.02 0.84 6.35 -2.39 -0.02 0.82 16 29 H 0.04 1.86 6.76 -2.39 -0.02 1.85 16 30 H 0.07 2.31 6.72 -2.39 -0.02 2.29 16 31 H -0.01 -0.53 5.98 -2.38 -0.01 -0.54 16 32 H 0.02 1.04 7.36 -2.39 -0.02 1.02 16 33 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -65.59 258.18 -1.97 -67.56 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.23 Total: 10.67 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 4.19 Total: -19.64 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -8.28 Total: -104.97 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Total: -65.59 -1.97 -67.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686269725.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.095 kcal (2) G-P(sol) polarization free energy of solvation -65.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds