Wall clock time and date at job start Mon Mar 30 2020 02:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47074 * 2 1 4 4 C 1.53000 * 109.46908 * 240.00348 * 2 1 3 5 5 C 1.50704 * 109.47464 * 165.94606 * 4 2 1 6 6 H 1.08005 * 119.99518 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00584 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00337 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99869 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47120 * 89.99937 * 9 7 5 11 11 H 1.48495 * 109.47357 * 210.00271 * 9 7 5 12 12 H 1.48504 * 109.47035 * 330.00228 * 9 7 5 13 13 N 1.46898 * 109.47690 * 120.00057 * 2 1 3 14 14 N 1.45403 * 110.99754 * 75.47477 * 13 2 1 15 15 C 1.48558 * 111.00151 * 87.35537 * 14 13 2 16 16 C 1.54383 * 104.70043 * 200.90276 * 15 14 13 17 17 C 1.54567 * 104.90962 * 23.87717 * 16 15 14 18 18 C 1.48567 * 111.00032 * 331.93281 * 14 13 2 19 19 H 1.08997 * 109.47570 * 53.26349 * 1 2 3 20 20 H 1.09001 * 109.47214 * 173.27151 * 1 2 3 21 21 H 1.09001 * 109.46977 * 293.25949 * 1 2 3 22 22 H 1.09001 * 109.47237 * 285.94562 * 4 2 1 23 23 H 1.09000 * 109.47333 * 45.94570 * 4 2 1 24 24 H 0.97004 * 119.99855 * 179.97438 * 8 7 5 25 25 H 1.00895 * 110.99835 * 311.52962 * 13 2 1 26 26 H 1.09001 * 110.41091 * 319.73470 * 15 14 13 27 27 H 1.08997 * 110.41380 * 82.06169 * 15 14 13 28 28 H 1.09001 * 110.32552 * 142.80531 * 16 15 14 29 29 H 1.08999 * 110.31985 * 265.01495 * 16 15 14 30 30 H 1.09005 * 110.30030 * 241.08306 * 17 16 15 31 31 H 1.09001 * 110.31726 * 118.90202 * 17 16 15 32 32 H 1.08996 * 110.40978 * 277.81991 * 18 14 13 33 33 H 1.09005 * 110.40715 * 40.14556 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5069 -0.4295 -1.4342 6 1 4.0236 0.2070 -0.7311 7 6 4.1890 -0.9743 -2.5013 8 7 5.4692 -0.7202 -2.6623 9 14 3.2950 -2.0746 -3.7178 10 1 2.7370 -1.2465 -4.8169 11 1 4.2462 -3.0669 -4.2795 12 1 2.1909 -2.7851 -3.0238 13 7 2.0198 -0.6925 1.1994 14 7 1.8725 -2.1329 1.0660 15 6 3.0576 -2.7296 0.3980 16 6 2.5584 -4.0844 -0.1486 17 6 1.0298 -3.9132 -0.3001 18 6 0.7383 -2.4713 0.1680 19 1 -0.3634 0.6146 -0.8235 20 1 -0.3634 -1.0206 -0.1204 21 1 -0.3633 0.4058 0.9442 22 1 1.8949 -1.7953 -1.1335 23 1 1.4873 -0.3719 -2.1215 24 1 5.9492 -1.1038 -3.4130 25 1 1.5515 -0.3563 2.0275 26 1 3.3952 -2.0915 -0.4187 27 1 3.8623 -2.8831 1.1170 28 1 3.0154 -4.2940 -1.1158 29 1 2.7825 -4.8835 0.5580 30 1 0.5045 -4.6297 0.3315 31 1 0.7362 -4.0395 -1.3422 32 1 -0.2039 -2.4320 0.7145 33 1 0.7118 -1.7912 -0.6835 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686780792.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:55 Heat of formation + Delta-G solvation = 96.411758 kcal Electronic energy + Delta-G solvation = -14063.557200 eV Core-core repulsion = 11934.962621 eV Total energy + Delta-G solvation = -2128.594579 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.87399 -34.64090 -32.76175 -30.68356 -28.86424 -27.76235 -26.54619 -23.00273 -20.53654 -20.18195 -19.57495 -16.98427 -16.23317 -15.55563 -14.44611 -14.19810 -13.47940 -13.08264 -12.70897 -12.48906 -12.22263 -11.94857 -11.74890 -11.48699 -11.13811 -10.80946 -10.52546 -10.41974 -10.15824 -9.88529 -9.70459 -9.59952 -9.05991 -8.53022 -8.05802 -7.48955 -6.10110 -4.03288 3.22451 3.31232 3.32014 4.30381 4.36542 5.01697 5.21988 5.28445 5.43183 5.55059 5.65272 5.76513 5.98628 6.01702 6.10774 6.21941 6.33693 6.36832 6.41641 6.45461 6.55641 6.62687 6.82027 7.03384 7.20214 7.32870 7.53085 7.72044 7.95812 8.31488 8.52344 9.01197 9.49423 11.02415 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031972 B = 0.017467 C = 0.014907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.556015 B = 1602.670618 C = 1877.921924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.064 3.936 3 H 0.084 0.916 4 C -0.056 4.056 5 C -0.499 4.499 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.895 5.895 9 Si 0.863 3.137 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.262 1.262 13 N -0.514 5.514 14 N -0.333 5.333 15 C -0.011 4.011 16 C -0.126 4.126 17 C -0.124 4.124 18 C -0.057 4.057 19 H 0.054 0.946 20 H 0.082 0.918 21 H 0.045 0.955 22 H 0.062 0.938 23 H 0.015 0.985 24 H 0.264 0.736 25 H 0.339 0.661 26 H 0.142 0.858 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 -4.009 3.597 10.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.047 4.047 3 H 0.102 0.898 4 C -0.092 4.092 5 C -0.536 4.536 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.533 5.533 9 Si 0.691 3.309 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.186 1.186 13 N -0.234 5.234 14 N -0.148 5.148 15 C -0.138 4.138 16 C -0.165 4.165 17 C -0.163 4.163 18 C -0.185 4.185 19 H 0.073 0.927 20 H 0.100 0.900 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.033 0.967 24 H 0.074 0.926 25 H 0.157 0.843 26 H 0.159 0.841 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.409 -4.228 3.853 10.171 hybrid contribution -1.326 -0.282 -1.404 1.952 sum -9.735 -4.511 2.449 11.006 Atomic orbital electron populations 1.23548 0.99247 1.03813 1.01188 1.22074 0.90494 0.99589 0.92509 0.89769 1.20732 0.98030 0.98292 0.92196 1.20963 0.91981 1.30216 1.10489 0.90211 1.25020 0.94737 0.96343 0.97218 1.69900 1.08166 1.44750 1.30500 0.87041 0.80285 0.81363 0.82260 1.20362 1.21103 1.18618 1.64044 1.58849 0.96802 1.03744 1.68942 1.03116 1.00834 1.41942 1.24137 0.92796 0.94819 1.02046 1.22356 0.95012 0.98467 1.00655 1.22307 0.96879 0.96678 1.00408 1.25182 0.95785 0.97816 0.99690 0.92733 0.89962 0.93546 0.92036 0.96695 0.92635 0.84345 0.84141 0.91455 0.91862 0.92249 0.92035 0.92047 0.91667 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.54 8.70 37.16 0.32 -3.22 16 2 C 0.06 1.27 3.04 -67.71 -0.21 1.07 16 3 H 0.08 1.74 8.06 -51.93 -0.42 1.32 16 4 C -0.06 -1.28 2.07 -27.88 -0.06 -1.33 16 5 C -0.50 -13.56 7.15 -34.44 -0.25 -13.81 16 6 H 0.08 2.42 7.99 -52.48 -0.42 2.00 16 7 C 0.07 1.92 5.19 -17.82 -0.09 1.83 16 8 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 9 Si 0.86 20.80 27.47 -169.99 -4.67 16.13 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 13 N -0.51 -10.07 6.96 -4.67 -0.03 -10.10 16 14 N -0.33 -6.51 6.24 -109.65 -0.68 -7.19 16 15 C -0.01 -0.24 6.12 -2.18 -0.01 -0.25 16 16 C -0.13 -2.30 6.86 -25.18 -0.17 -2.48 16 17 C -0.12 -2.08 6.72 -25.19 -0.17 -2.25 16 18 C -0.06 -1.02 3.85 -2.18 -0.01 -1.02 16 19 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 20 H 0.08 1.30 3.69 -51.93 -0.19 1.11 16 21 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 22 H 0.06 1.39 1.53 -51.93 -0.08 1.31 16 23 H 0.01 0.34 7.49 -51.93 -0.39 -0.05 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.34 5.77 8.82 -174.66 -1.54 4.23 16 26 H 0.14 3.44 2.84 -51.93 -0.15 3.29 16 27 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.05 7.23 -51.93 -0.38 0.67 16 33 H 0.12 2.28 2.25 -52.49 -0.12 2.16 16 LS Contribution 240.22 15.07 3.62 3.62 Total: -1.00 -28.69 240.22 -7.44 -36.13 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.80 Total: 8.89 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -0.64 Total: -21.47 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.06 Total: -43.30 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.69 -7.44 -36.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686780792.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.540 kcal (2) G-P(sol) polarization free energy of solvation -28.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds