Wall clock time and date at job start Mon Mar 30 2020 02:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47074 * 2 1 4 4 C 1.53000 * 109.46908 * 240.00348 * 2 1 3 5 5 C 1.50704 * 109.47464 * 165.94606 * 4 2 1 6 6 H 1.08005 * 119.99518 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00584 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00337 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99869 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47120 * 89.99937 * 9 7 5 11 11 H 1.48495 * 109.47357 * 210.00271 * 9 7 5 12 12 H 1.48504 * 109.47035 * 330.00228 * 9 7 5 13 13 N 1.46898 * 109.47690 * 120.00057 * 2 1 3 14 14 N 1.45403 * 110.99754 * 75.47477 * 13 2 1 15 15 C 1.48558 * 111.00151 * 87.35537 * 14 13 2 16 16 C 1.54383 * 104.70043 * 200.90276 * 15 14 13 17 17 C 1.54567 * 104.90962 * 23.87717 * 16 15 14 18 18 C 1.48567 * 111.00032 * 331.93281 * 14 13 2 19 19 H 1.08997 * 109.47570 * 53.26349 * 1 2 3 20 20 H 1.09001 * 109.47214 * 173.27151 * 1 2 3 21 21 H 1.09001 * 109.46977 * 293.25949 * 1 2 3 22 22 H 1.09001 * 109.47237 * 285.94562 * 4 2 1 23 23 H 1.09000 * 109.47333 * 45.94570 * 4 2 1 24 24 H 0.97004 * 119.99855 * 179.97438 * 8 7 5 25 25 H 1.00895 * 110.99835 * 311.52962 * 13 2 1 26 26 H 1.09001 * 110.41091 * 319.73470 * 15 14 13 27 27 H 1.08997 * 110.41380 * 82.06169 * 15 14 13 28 28 H 1.09001 * 110.32552 * 142.80531 * 16 15 14 29 29 H 1.08999 * 110.31985 * 265.01495 * 16 15 14 30 30 H 1.09005 * 110.30030 * 241.08306 * 17 16 15 31 31 H 1.09001 * 110.31726 * 118.90202 * 17 16 15 32 32 H 1.08996 * 110.40978 * 277.81991 * 18 14 13 33 33 H 1.09005 * 110.40715 * 40.14556 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5069 -0.4295 -1.4342 6 1 4.0236 0.2070 -0.7311 7 6 4.1890 -0.9743 -2.5013 8 7 5.4692 -0.7202 -2.6623 9 14 3.2950 -2.0746 -3.7178 10 1 2.7370 -1.2465 -4.8169 11 1 4.2462 -3.0669 -4.2795 12 1 2.1909 -2.7851 -3.0238 13 7 2.0198 -0.6925 1.1994 14 7 1.8725 -2.1329 1.0660 15 6 3.0576 -2.7296 0.3980 16 6 2.5584 -4.0844 -0.1486 17 6 1.0298 -3.9132 -0.3001 18 6 0.7383 -2.4713 0.1680 19 1 -0.3634 0.6146 -0.8235 20 1 -0.3634 -1.0206 -0.1204 21 1 -0.3633 0.4058 0.9442 22 1 1.8949 -1.7953 -1.1335 23 1 1.4873 -0.3719 -2.1215 24 1 5.9492 -1.1038 -3.4130 25 1 1.5515 -0.3563 2.0275 26 1 3.3952 -2.0915 -0.4187 27 1 3.8623 -2.8831 1.1170 28 1 3.0154 -4.2940 -1.1158 29 1 2.7825 -4.8835 0.5580 30 1 0.5045 -4.6297 0.3315 31 1 0.7362 -4.0395 -1.3422 32 1 -0.2039 -2.4320 0.7145 33 1 0.7118 -1.7912 -0.6835 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686780792.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:55 Heat of formation + Delta-G solvation = 75.649628 kcal Electronic energy + Delta-G solvation = -14064.457514 eV Core-core repulsion = 11934.962621 eV Total energy + Delta-G solvation = -2129.494893 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.41246 -36.15654 -34.81424 -32.26842 -30.61300 -29.27770 -28.00745 -24.90275 -21.98763 -21.74392 -21.13535 -18.99992 -17.90810 -17.07173 -16.36003 -15.65640 -15.07028 -14.68606 -14.55210 -14.02275 -13.69688 -13.59884 -13.18502 -13.09946 -12.82675 -12.39747 -12.20457 -12.01666 -11.72472 -11.58800 -11.40502 -11.26188 -10.95127 -10.56506 -9.56608 -9.05956 -8.25888 -6.22375 1.32183 1.33575 1.43496 2.33990 2.80218 3.06906 3.60440 3.90874 4.07004 4.16074 4.25647 4.30686 4.54724 4.60007 4.73061 4.78615 4.91214 4.95845 4.98916 5.03661 5.15508 5.20055 5.22900 5.31214 5.51248 5.61550 5.71513 5.93689 6.33473 6.54678 6.79697 6.80963 7.32961 8.90751 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031972 B = 0.017467 C = 0.014907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.556015 B = 1602.670618 C = 1877.921924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.066 3.934 3 H 0.065 0.935 4 C -0.053 4.053 5 C -0.492 4.492 6 H 0.029 0.971 7 C 0.011 3.989 8 N -0.948 5.948 9 Si 0.927 3.073 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.234 1.234 13 N -0.533 5.533 14 N -0.329 5.329 15 C -0.019 4.019 16 C -0.125 4.125 17 C -0.121 4.121 18 C -0.060 4.060 19 H 0.061 0.939 20 H 0.092 0.908 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.017 0.983 24 H 0.264 0.736 25 H 0.354 0.646 26 H 0.108 0.892 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.072 -5.583 3.677 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.045 4.045 3 H 0.083 0.917 4 C -0.090 4.090 5 C -0.530 4.530 6 H 0.047 0.953 7 C -0.186 4.186 8 N -0.589 5.589 9 Si 0.750 3.250 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.157 1.157 13 N -0.255 5.255 14 N -0.144 5.144 15 C -0.147 4.147 16 C -0.165 4.165 17 C -0.160 4.160 18 C -0.187 4.187 19 H 0.080 0.920 20 H 0.111 0.889 21 H 0.086 0.914 22 H 0.094 0.906 23 H 0.036 0.964 24 H 0.073 0.927 25 H 0.173 0.827 26 H 0.125 0.875 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.338 -5.793 3.956 13.333 hybrid contribution -0.365 0.278 -1.317 1.395 sum -11.703 -5.515 2.639 13.204 Atomic orbital electron populations 1.23393 0.95655 1.04852 1.02760 1.21911 0.93300 0.98000 0.91328 0.91737 1.20759 0.94829 0.99567 0.93862 1.21086 0.94294 1.28575 1.09020 0.95254 1.25847 0.95308 0.98063 0.99392 1.70063 1.10229 1.46904 1.31700 0.86022 0.79711 0.79516 0.79721 1.19841 1.21147 1.15715 1.63938 1.60078 0.97200 1.04326 1.68917 1.02960 1.00392 1.42135 1.24011 0.93647 0.96330 1.00684 1.22359 0.96358 0.97132 1.00602 1.22368 0.95526 0.96529 1.01598 1.25214 0.96067 0.98210 0.99239 0.92015 0.88940 0.91394 0.90603 0.96450 0.92702 0.82668 0.87487 0.92804 0.92640 0.90136 0.89224 0.91231 0.88904 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.03 8.70 71.98 0.63 -5.40 16 2 C 0.07 2.52 3.04 44.92 0.14 2.66 16 3 H 0.06 2.71 8.06 -2.39 -0.02 2.69 16 4 C -0.05 -2.40 2.07 29.85 0.06 -2.34 16 5 C -0.49 -27.54 7.15 25.60 0.18 -27.35 16 6 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 7 C 0.01 0.61 5.19 84.65 0.44 1.05 16 8 N -0.95 -58.97 13.96 21.44 0.30 -58.67 16 9 Si 0.93 42.66 27.47 68.60 1.88 44.55 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.23 -9.61 6.54 99.48 0.65 -8.96 16 13 N -0.53 -20.35 6.96 -168.68 -1.17 -21.52 16 14 N -0.33 -12.17 6.24 -500.84 -3.13 -15.29 16 15 C -0.02 -0.79 6.12 86.45 0.53 -0.26 16 16 C -0.13 -4.25 6.86 31.60 0.22 -4.04 16 17 C -0.12 -3.53 6.72 31.60 0.21 -3.32 16 18 C -0.06 -1.90 3.85 86.45 0.33 -1.56 16 19 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 20 H 0.09 2.51 3.69 -2.39 -0.01 2.51 16 21 H 0.07 1.68 8.07 -2.39 -0.02 1.67 16 22 H 0.08 3.25 1.53 -2.39 0.00 3.25 16 23 H 0.02 0.77 7.49 -2.39 -0.02 0.75 16 24 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 25 H 0.35 11.46 8.82 -204.85 -1.81 9.65 16 26 H 0.11 5.28 2.84 -2.39 -0.01 5.27 16 27 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 2.48 7.23 -2.39 -0.02 2.46 16 33 H 0.11 3.65 2.25 -2.91 -0.01 3.65 16 Total: -1.00 -63.63 240.22 -0.13 -63.76 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -0.75 Total: 27.74 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 2.74 Total: -40.57 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -4.00 Total: -95.48 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.55 kcal Total: -63.63 -0.13 -63.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686780792.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.408 kcal (2) G-P(sol) polarization free energy of solvation -63.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds