Wall clock time and date at job start Mon Mar 30 2020 02:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46848 * 2 1 4 4 C 1.53001 * 109.47601 * 120.00373 * 2 1 3 5 5 C 1.50698 * 109.46850 * 191.29598 * 4 2 1 6 6 H 1.07992 * 120.00213 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99409 * 180.27551 * 5 4 2 8 8 N 1.31515 * 119.99762 * 179.72518 * 7 5 4 9 9 Si 1.86802 * 119.99963 * 359.72370 * 7 5 4 10 10 H 1.48496 * 109.47086 * 90.00286 * 9 7 5 11 11 H 1.48502 * 109.46710 * 209.99935 * 9 7 5 12 12 H 1.48500 * 109.47377 * 329.99781 * 9 7 5 13 13 N 1.46901 * 109.46904 * 240.00818 * 2 1 3 14 14 N 1.45396 * 110.99863 * 317.08452 * 13 2 1 15 15 C 1.48537 * 111.00331 * 320.58426 * 14 13 2 16 16 C 1.54941 * 103.22843 * 159.71753 * 15 14 13 17 17 C 1.54594 * 102.92375 * 322.58906 * 16 15 14 18 18 C 1.47903 * 111.00211 * 77.97962 * 14 13 2 19 19 H 1.08998 * 109.46862 * 291.26493 * 1 2 3 20 20 H 1.08992 * 109.47320 * 51.27089 * 1 2 3 21 21 H 1.09000 * 109.46844 * 171.27348 * 1 2 3 22 22 H 1.08999 * 109.46552 * 71.29414 * 4 2 1 23 23 H 1.08999 * 109.46448 * 311.29818 * 4 2 1 24 24 H 0.97004 * 119.99849 * 179.97438 * 8 7 5 25 25 H 1.00896 * 111.00026 * 193.13367 * 13 2 1 26 26 H 1.08991 * 110.66862 * 278.15844 * 15 14 13 27 27 H 1.09006 * 110.66021 * 41.28629 * 15 14 13 28 28 H 1.08996 * 110.72347 * 204.22966 * 16 15 14 29 29 H 1.08997 * 110.87185 * 81.02075 * 16 15 14 30 30 H 1.08994 * 110.30693 * 263.04289 * 17 16 15 31 31 H 1.08993 * 110.30953 * 140.86961 * 17 16 15 32 32 H 1.08993 * 109.91581 * 333.51379 * 18 14 13 33 33 H 1.09005 * 109.91212 * 94.60110 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7213 1.2492 5 6 3.5212 -0.4848 1.3961 6 1 4.0462 0.1191 0.6709 7 6 4.2071 -1.0447 2.4531 8 7 5.5006 -0.8428 2.5784 9 14 3.2991 -2.0899 3.7071 10 1 3.3113 -3.5091 3.2703 11 1 3.9689 -1.9725 5.0272 12 1 1.8953 -1.6189 3.8206 13 7 2.0197 -0.6923 -1.1996 14 7 1.2561 -1.9040 -1.4499 15 6 0.9433 -2.6082 -0.1800 16 6 -0.2577 -3.5099 -0.5611 17 6 -1.0624 -2.6202 -1.5362 18 6 -0.0500 -1.5892 -2.0686 19 1 -0.3633 0.3727 0.9577 20 1 -0.3633 0.6429 -0.8016 21 1 -0.3633 -1.0158 -0.1559 22 1 1.8505 -1.7905 1.1541 23 1 1.5218 -0.3370 2.1276 24 1 5.9831 -1.2363 3.3222 25 1 3.0050 -0.8953 -1.1230 26 1 1.7906 -3.2124 0.1436 27 1 0.6590 -1.8960 0.5947 28 1 -0.8523 -3.7529 0.3195 29 1 0.0814 -4.4186 -1.0585 30 1 -1.8725 -2.1171 -1.0083 31 1 -1.4585 -3.2195 -2.3559 32 1 -0.3614 -0.5834 -1.7870 33 1 0.0254 -1.6643 -3.1534 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686780793.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:57 Heat of formation + Delta-G solvation = 85.722858 kcal Electronic energy + Delta-G solvation = -13711.306986 eV Core-core repulsion = 11582.248902 eV Total energy + Delta-G solvation = -2129.058085 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.97688 -34.92435 -32.51429 -30.68510 -29.29825 -27.52516 -27.13571 -22.84876 -20.91388 -20.47575 -19.54226 -17.11291 -16.39095 -15.47156 -14.64215 -14.32444 -13.80444 -13.44481 -12.90533 -12.50373 -12.02788 -11.91605 -11.76942 -11.71580 -11.27861 -11.01816 -10.90130 -10.58279 -10.34889 -10.31145 -9.75378 -9.71831 -9.09744 -8.58081 -7.95943 -7.82978 -6.10747 -4.08285 3.23348 3.32061 3.33570 4.17892 4.38062 4.78500 4.97829 5.13032 5.20845 5.43960 5.55903 5.64830 5.71989 5.78800 5.92342 5.96033 6.04688 6.18012 6.27383 6.33646 6.38532 6.50031 6.54196 6.63878 7.03015 7.13411 7.26174 7.70088 7.95124 8.23740 8.45421 8.93291 9.51390 11.02338 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044975 B = 0.012028 C = 0.010901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.421698 B = 2327.306241 C = 2567.887645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.058 3.942 3 H 0.085 0.915 4 C -0.078 4.078 5 C -0.520 4.520 6 H 0.074 0.926 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.875 3.125 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.516 5.516 14 N -0.340 5.340 15 C -0.039 4.039 16 C -0.129 4.129 17 C -0.133 4.133 18 C 0.015 3.985 19 H 0.053 0.947 20 H 0.056 0.944 21 H 0.078 0.922 22 H 0.051 0.949 23 H 0.017 0.983 24 H 0.263 0.737 25 H 0.369 0.631 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.359 -3.143 -5.200 13.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.053 4.053 3 H 0.103 0.897 4 C -0.116 4.116 5 C -0.558 4.558 6 H 0.092 0.908 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.192 1.192 13 N -0.240 5.240 14 N -0.155 5.155 15 C -0.167 4.167 16 C -0.168 4.168 17 C -0.172 4.172 18 C -0.114 4.114 19 H 0.072 0.928 20 H 0.075 0.925 21 H 0.096 0.904 22 H 0.068 0.932 23 H 0.035 0.965 24 H 0.073 0.927 25 H 0.190 0.810 26 H 0.102 0.898 27 H 0.122 0.878 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.210 -3.100 -5.891 13.907 hybrid contribution -0.351 -0.585 2.154 2.259 sum -12.561 -3.684 -3.738 13.613 Atomic orbital electron populations 1.22891 0.97150 1.02741 1.01001 1.22049 0.92979 0.99487 0.90814 0.89748 1.21183 0.98160 0.98039 0.94234 1.21065 0.91077 1.32349 1.11337 0.90802 1.25000 0.94633 0.95986 0.97584 1.69909 1.07455 1.45044 1.31336 0.86849 0.80479 0.81126 0.81291 1.20203 1.21302 1.19190 1.64469 1.08748 1.13712 1.37116 1.68413 1.16199 1.12672 1.18211 1.25016 0.98070 0.98152 0.95455 1.22553 0.96843 0.98688 0.98761 1.22444 0.97966 0.97679 0.99129 1.23388 0.88670 0.99689 0.99610 0.92823 0.92526 0.90359 0.93183 0.96493 0.92692 0.80982 0.89824 0.87768 0.91567 0.91184 0.91776 0.91367 0.90265 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 7.03 37.16 0.26 -2.73 16 2 C 0.06 1.15 3.10 -67.71 -0.21 0.94 16 3 H 0.08 1.77 8.09 -51.93 -0.42 1.35 16 4 C -0.08 -1.81 2.84 -27.88 -0.08 -1.89 16 5 C -0.52 -14.35 8.89 -34.44 -0.31 -14.65 16 6 H 0.07 2.20 7.86 -52.49 -0.41 1.78 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 9 Si 0.88 21.44 27.46 -169.99 -4.67 16.78 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.30 6.55 56.52 0.37 -5.93 16 13 N -0.52 -10.14 7.06 -4.66 -0.03 -10.18 16 14 N -0.34 -6.11 6.12 -110.16 -0.67 -6.79 16 15 C -0.04 -0.69 4.19 -1.89 -0.01 -0.70 16 16 C -0.13 -1.81 7.00 -24.87 -0.17 -1.98 16 17 C -0.13 -1.68 6.19 -25.38 -0.16 -1.84 16 18 C 0.01 0.22 6.03 -2.75 -0.02 0.20 16 19 H 0.05 0.85 8.03 -51.93 -0.42 0.44 16 20 H 0.06 0.85 6.83 -51.93 -0.35 0.50 16 21 H 0.08 1.23 2.17 -51.93 -0.11 1.12 16 22 H 0.05 1.14 3.01 -52.04 -0.16 0.98 16 23 H 0.02 0.40 7.08 -51.93 -0.37 0.03 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.37 7.95 8.03 -174.66 -1.40 6.55 16 26 H 0.08 1.63 7.61 -51.93 -0.40 1.23 16 27 H 0.11 1.95 2.69 -51.93 -0.14 1.81 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.73 7.78 -51.93 -0.40 0.33 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.19 4.11 -51.93 -0.21 0.97 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 240.29 15.07 3.62 3.62 Total: -1.00 -29.16 240.29 -7.42 -36.58 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.65 Total: 7.35 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -0.79 Total: -20.74 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.07 Total: -43.58 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.16 -7.42 -36.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686780793.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.302 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds