Wall clock time and date at job start Mon Mar 30 2020 02:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46848 * 2 1 4 4 C 1.53001 * 109.47601 * 120.00373 * 2 1 3 5 5 C 1.50698 * 109.46850 * 191.29598 * 4 2 1 6 6 H 1.07992 * 120.00213 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99409 * 180.27551 * 5 4 2 8 8 N 1.31515 * 119.99762 * 179.72518 * 7 5 4 9 9 Si 1.86802 * 119.99963 * 359.72370 * 7 5 4 10 10 H 1.48496 * 109.47086 * 90.00286 * 9 7 5 11 11 H 1.48502 * 109.46710 * 209.99935 * 9 7 5 12 12 H 1.48500 * 109.47377 * 329.99781 * 9 7 5 13 13 N 1.46901 * 109.46904 * 240.00818 * 2 1 3 14 14 N 1.45396 * 110.99863 * 317.08452 * 13 2 1 15 15 C 1.48537 * 111.00331 * 320.58426 * 14 13 2 16 16 C 1.54941 * 103.22843 * 159.71753 * 15 14 13 17 17 C 1.54594 * 102.92375 * 322.58906 * 16 15 14 18 18 C 1.47903 * 111.00211 * 77.97962 * 14 13 2 19 19 H 1.08998 * 109.46862 * 291.26493 * 1 2 3 20 20 H 1.08992 * 109.47320 * 51.27089 * 1 2 3 21 21 H 1.09000 * 109.46844 * 171.27348 * 1 2 3 22 22 H 1.08999 * 109.46552 * 71.29414 * 4 2 1 23 23 H 1.08999 * 109.46448 * 311.29818 * 4 2 1 24 24 H 0.97004 * 119.99849 * 179.97438 * 8 7 5 25 25 H 1.00896 * 111.00026 * 193.13367 * 13 2 1 26 26 H 1.08991 * 110.66862 * 278.15844 * 15 14 13 27 27 H 1.09006 * 110.66021 * 41.28629 * 15 14 13 28 28 H 1.08996 * 110.72347 * 204.22966 * 16 15 14 29 29 H 1.08997 * 110.87185 * 81.02075 * 16 15 14 30 30 H 1.08994 * 110.30693 * 263.04289 * 17 16 15 31 31 H 1.08993 * 110.30953 * 140.86961 * 17 16 15 32 32 H 1.08993 * 109.91581 * 333.51379 * 18 14 13 33 33 H 1.09005 * 109.91212 * 94.60110 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7213 1.2492 5 6 3.5212 -0.4848 1.3961 6 1 4.0462 0.1191 0.6709 7 6 4.2071 -1.0447 2.4531 8 7 5.5006 -0.8428 2.5784 9 14 3.2991 -2.0899 3.7071 10 1 3.3113 -3.5091 3.2703 11 1 3.9689 -1.9725 5.0272 12 1 1.8953 -1.6189 3.8206 13 7 2.0197 -0.6923 -1.1996 14 7 1.2561 -1.9040 -1.4499 15 6 0.9433 -2.6082 -0.1800 16 6 -0.2577 -3.5099 -0.5611 17 6 -1.0624 -2.6202 -1.5362 18 6 -0.0500 -1.5892 -2.0686 19 1 -0.3633 0.3727 0.9577 20 1 -0.3633 0.6429 -0.8016 21 1 -0.3633 -1.0158 -0.1559 22 1 1.8505 -1.7905 1.1541 23 1 1.5218 -0.3370 2.1276 24 1 5.9831 -1.2363 3.3222 25 1 3.0050 -0.8953 -1.1230 26 1 1.7906 -3.2124 0.1436 27 1 0.6590 -1.8960 0.5947 28 1 -0.8523 -3.7529 0.3195 29 1 0.0814 -4.4186 -1.0585 30 1 -1.8725 -2.1171 -1.0083 31 1 -1.4585 -3.2195 -2.3559 32 1 -0.3614 -0.5834 -1.7870 33 1 0.0254 -1.6643 -3.1534 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686780793.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:57 Heat of formation + Delta-G solvation = 64.744781 kcal Electronic energy + Delta-G solvation = -13712.216664 eV Core-core repulsion = 11582.248902 eV Total energy + Delta-G solvation = -2129.967762 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.36415 -36.42868 -34.53259 -32.23842 -30.68768 -29.13896 -28.50496 -24.72012 -22.23763 -21.76653 -21.03975 -19.11455 -17.83547 -16.90897 -16.47668 -15.65548 -15.23613 -15.18464 -14.42368 -14.39206 -13.52330 -13.35874 -13.22316 -13.11364 -12.70391 -12.57692 -12.15585 -12.04494 -11.92152 -11.80031 -11.64344 -11.29990 -10.95726 -10.60636 -9.53198 -9.27612 -8.31758 -6.33675 1.29683 1.31631 1.42197 2.31201 2.74372 3.03984 3.53322 3.85463 3.98623 4.12644 4.19474 4.28879 4.40825 4.54915 4.65834 4.76856 4.83714 4.89193 4.99237 5.04030 5.09192 5.12852 5.20538 5.32120 5.34738 5.44693 5.62274 5.91879 6.19274 6.29498 6.70729 6.75133 7.28896 8.84736 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044975 B = 0.012028 C = 0.010901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.421698 B = 2327.306241 C = 2567.887645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.060 3.940 3 H 0.065 0.935 4 C -0.073 4.073 5 C -0.522 4.522 6 H 0.034 0.966 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.943 3.057 10 H -0.266 1.266 11 H -0.286 1.286 12 H -0.247 1.247 13 N -0.519 5.519 14 N -0.353 5.353 15 C -0.045 4.045 16 C -0.123 4.123 17 C -0.125 4.125 18 C 0.009 3.991 19 H 0.061 0.939 20 H 0.074 0.926 21 H 0.091 0.909 22 H 0.063 0.937 23 H 0.016 0.984 24 H 0.265 0.735 25 H 0.352 0.648 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.448 -4.328 -5.182 16.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.051 4.051 3 H 0.083 0.917 4 C -0.111 4.111 5 C -0.560 4.560 6 H 0.052 0.948 7 C -0.190 4.190 8 N -0.589 5.589 9 Si 0.767 3.233 10 H -0.191 1.191 11 H -0.212 1.212 12 H -0.171 1.171 13 N -0.241 5.241 14 N -0.169 5.169 15 C -0.173 4.173 16 C -0.162 4.162 17 C -0.163 4.163 18 C -0.119 4.119 19 H 0.080 0.920 20 H 0.092 0.908 21 H 0.109 0.891 22 H 0.081 0.919 23 H 0.034 0.966 24 H 0.074 0.926 25 H 0.171 0.829 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.334 -4.276 -5.894 16.975 hybrid contribution 0.666 -0.173 2.039 2.152 sum -14.669 -4.449 -3.855 15.806 Atomic orbital electron populations 1.22833 0.93830 1.04047 1.02256 1.21977 0.95626 0.98006 0.89515 0.91664 1.21199 0.94881 0.99246 0.95757 1.21369 0.93555 1.30978 1.10129 0.94786 1.25944 0.95401 0.97637 1.00054 1.70069 1.09417 1.46947 1.32512 0.85762 0.79918 0.79490 0.78158 1.19121 1.21189 1.17103 1.64451 1.07965 1.15032 1.36624 1.68399 1.18071 1.11850 1.18532 1.24898 0.98841 0.98470 0.95107 1.22550 0.95397 0.98253 1.00017 1.22449 0.97369 0.96943 0.99575 1.23529 0.87715 1.00755 0.99900 0.92001 0.90757 0.89119 0.91935 0.96596 0.92638 0.82949 0.92451 0.88639 0.89617 0.90710 0.89885 0.89128 0.90075 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.25 7.03 71.98 0.51 -4.74 16 2 C 0.06 2.37 3.10 44.92 0.14 2.51 16 3 H 0.07 2.79 8.09 -2.38 -0.02 2.77 16 4 C -0.07 -3.34 2.84 29.85 0.08 -3.25 16 5 C -0.52 -29.68 8.89 25.60 0.23 -29.45 16 6 H 0.03 2.14 7.86 -2.91 -0.02 2.12 16 7 C 0.01 0.38 5.47 84.66 0.46 0.85 16 8 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 9 Si 0.94 44.11 27.46 68.60 1.88 46.00 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.25 -10.70 6.55 99.48 0.65 -10.05 16 13 N -0.52 -20.46 7.06 -168.66 -1.19 -21.65 16 14 N -0.35 -12.21 6.12 -502.43 -3.07 -15.28 16 15 C -0.05 -1.51 4.19 86.65 0.36 -1.15 16 16 C -0.12 -2.98 7.00 31.80 0.22 -2.75 16 17 C -0.12 -2.57 6.19 31.47 0.19 -2.38 16 18 C 0.01 0.23 6.03 86.45 0.52 0.75 16 19 H 0.06 1.78 8.03 -2.39 -0.02 1.76 16 20 H 0.07 2.01 6.83 -2.39 -0.02 1.99 16 21 H 0.09 2.53 2.17 -2.39 -0.01 2.53 16 22 H 0.06 2.78 3.01 -2.49 -0.01 2.77 16 23 H 0.02 0.73 7.08 -2.39 -0.02 0.71 16 24 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 25 H 0.35 15.79 8.03 -204.86 -1.65 14.14 16 26 H 0.06 2.20 7.61 -2.39 -0.02 2.18 16 27 H 0.10 3.34 2.69 -2.38 -0.01 3.34 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 1.45 7.78 -2.39 -0.02 1.43 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 2.16 4.11 -2.39 -0.01 2.15 16 33 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -64.18 240.29 0.05 -64.13 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.59 Total: 25.81 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 2.72 Total: -39.62 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -3.96 Total: -96.32 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Total: -64.18 0.05 -64.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686780793.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.875 kcal (2) G-P(sol) polarization free energy of solvation -64.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds