Wall clock time and date at job start Mon Mar 30 2020 02:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.46752 * 2 1 4 4 C 1.52997 * 109.47302 * 240.00561 * 2 1 3 5 5 C 1.50696 * 109.47305 * 65.55412 * 4 2 1 6 6 H 1.08000 * 120.00406 * 355.26727 * 5 4 2 7 7 C 1.37884 * 120.00210 * 175.26637 * 5 4 2 8 8 N 1.31517 * 119.99641 * 359.72429 * 7 5 4 9 9 Si 1.86799 * 120.00250 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46933 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46926 * 120.00064 * 9 7 5 12 12 H 1.48501 * 109.47187 * 240.00071 * 9 7 5 13 13 N 1.46894 * 109.47655 * 120.00172 * 2 1 3 14 14 C 1.48537 * 111.00413 * 179.35401 * 13 2 1 15 15 C 1.54936 * 103.22937 * 159.71999 * 14 13 2 16 16 C 1.54597 * 102.92090 * 322.58783 * 15 14 13 17 17 H 1.09007 * 110.30384 * 263.03783 * 16 15 14 18 18 N 1.46898 * 110.39452 * 140.91820 * 16 15 14 19 19 C 1.47911 * 110.99914 * 296.74978 * 13 2 1 20 20 H 1.08997 * 109.47581 * 60.00068 * 1 2 3 21 21 H 1.09008 * 109.47120 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47388 * 299.99658 * 1 2 3 23 23 H 1.09007 * 109.47050 * 305.55415 * 4 2 1 24 24 H 1.09000 * 109.47166 * 185.55915 * 4 2 1 25 25 H 0.96996 * 119.99752 * 179.97438 * 8 7 5 26 26 H 1.08998 * 110.66303 * 278.15405 * 14 13 2 27 27 H 1.08995 * 110.66516 * 41.28064 * 14 13 2 28 28 H 1.08999 * 110.72590 * 204.22555 * 15 14 13 29 29 H 1.09005 * 110.72635 * 80.94088 * 15 14 13 30 30 H 1.00900 * 110.99836 * 64.23360 * 18 16 15 31 31 H 1.00900 * 111.00197 * 188.18227 * 18 16 15 32 32 H 1.09000 * 109.91542 * 333.50466 * 19 13 2 33 33 H 1.08998 * 109.91938 * 94.60480 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6531 0.0643 -2.4758 6 1 1.0340 0.9442 -2.3807 7 6 2.0895 -0.3403 -3.7196 8 7 2.8478 -1.4086 -3.8349 9 14 1.6105 0.6337 -5.2399 10 1 0.7652 1.7881 -4.8423 11 1 2.8360 1.1282 -5.9173 12 1 0.8501 -0.2406 -6.1687 13 7 2.0197 -0.6925 1.1993 14 6 3.5044 -0.7258 1.2258 15 6 3.8267 -0.9823 2.7194 16 6 2.7458 -0.1558 3.4532 17 1 3.1460 0.8148 3.7465 18 7 2.2584 -0.8830 4.6329 19 6 1.6104 0.0219 2.4281 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.5977 -1.7161 -1.3005 24 1 3.1254 -0.8081 -1.2009 25 1 3.1545 -1.6934 -4.7099 26 1 3.8820 -1.5388 0.6057 27 1 3.9165 0.2298 0.9019 28 1 4.8242 -0.6190 2.9667 29 1 3.7307 -2.0415 2.9584 30 1 2.9947 -1.0052 5.3119 31 1 1.4629 -0.4164 5.0422 32 1 1.4677 1.0807 2.2120 33 1 0.6859 -0.4058 2.8158 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695784528.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:36 Heat of formation + Delta-G solvation = -29.201286 kcal Electronic energy + Delta-G solvation = -13023.421741 eV Core-core repulsion = 10889.380172 eV Total energy + Delta-G solvation = -2134.041569 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.24157 -36.59432 -34.66276 -32.85296 -30.44975 -28.49619 -28.10131 -25.17968 -22.97527 -21.16987 -20.71707 -18.64820 -17.21145 -16.70868 -16.48114 -16.14325 -15.30527 -15.11259 -14.47903 -14.06234 -13.97862 -13.57694 -13.11296 -12.83936 -12.76036 -12.54153 -12.29899 -12.10261 -11.94424 -11.90858 -11.74052 -11.18213 -11.04894 -10.54900 -9.60866 -9.21735 -8.18889 -6.29098 1.39794 1.40207 1.53334 2.40603 3.13367 3.16548 3.59183 3.66953 3.82041 4.22575 4.33072 4.37469 4.44619 4.66424 4.67306 4.70713 4.91345 4.95995 5.01509 5.06299 5.20568 5.25356 5.38246 5.48580 5.68109 5.79253 6.05948 6.19416 6.33311 6.38627 6.68125 6.87354 7.39367 8.93770 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067569 B = 0.007877 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.294583 B = 3553.688788 C = 3803.363701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.085 3.915 3 H 0.022 0.978 4 C 0.042 3.958 5 C -0.533 4.533 6 H 0.062 0.938 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.965 3.035 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.279 1.279 13 N -0.524 5.524 14 C 0.038 3.962 15 C -0.107 4.107 16 C 0.087 3.913 17 H 0.054 0.946 18 N -0.843 5.843 19 C 0.042 3.958 20 H 0.054 0.946 21 H 0.045 0.955 22 H 0.062 0.938 23 H -0.014 1.014 24 H -0.005 1.005 25 H 0.263 0.737 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.351 0.649 31 H 0.350 0.650 32 H 0.041 0.959 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.466 4.570 14.169 14.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.023 4.023 3 H 0.040 0.960 4 C 0.004 3.996 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.574 5.574 9 Si 0.789 3.211 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.204 1.204 13 N -0.249 5.249 14 C -0.091 4.091 15 C -0.146 4.146 16 C -0.025 4.025 17 H 0.072 0.928 18 N -0.376 5.376 19 C -0.086 4.086 20 H 0.073 0.927 21 H 0.064 0.936 22 H 0.081 0.919 23 H 0.004 0.996 24 H 0.013 0.987 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.059 0.941 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.755 3.364 13.530 13.962 hybrid contribution 0.545 1.776 -0.715 1.990 sum -0.210 5.140 12.815 13.809 Atomic orbital electron populations 1.21614 0.93855 1.01307 1.01007 1.21768 0.96270 0.94152 0.90092 0.95998 1.18957 0.94646 0.94397 0.91583 1.21638 1.31427 1.11609 0.92500 0.91980 1.25968 0.95011 0.96184 1.02666 1.70125 1.36503 1.26105 1.24711 0.85401 0.78148 0.78773 0.78737 1.18472 1.20464 1.20430 1.64758 1.08924 1.49412 1.01823 1.23097 0.88630 0.99612 0.97730 1.22531 0.98385 1.01395 0.92274 1.22091 0.94027 0.95089 0.91281 0.92830 1.58684 1.12723 1.55854 1.10323 1.22936 0.99282 0.96190 0.90236 0.92697 0.93563 0.91933 0.99556 0.98705 0.92859 0.92279 0.94800 0.89436 0.90465 0.83457 0.83620 0.94079 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 8.96 71.98 0.65 -4.09 16 2 C 0.09 3.76 1.78 44.91 0.08 3.84 16 3 H 0.02 0.99 7.99 -2.39 -0.02 0.97 16 4 C 0.04 2.29 4.41 29.85 0.13 2.42 16 5 C -0.53 -30.77 8.49 25.60 0.22 -30.55 16 6 H 0.06 3.42 6.93 -2.91 -0.02 3.40 16 7 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 8 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 9 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 10 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 N -0.52 -20.24 5.11 -857.88 -4.38 -24.63 16 14 C 0.04 1.37 5.38 86.65 0.47 1.83 16 15 C -0.11 -2.90 6.78 31.80 0.22 -2.68 16 16 C 0.09 2.09 4.12 45.79 0.19 2.27 16 17 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 18 N -0.84 -16.50 9.15 -165.03 -1.51 -18.01 16 19 C 0.04 1.25 5.23 86.44 0.45 1.70 16 20 H 0.05 2.24 6.89 -2.39 -0.02 2.23 16 21 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 22 H 0.06 2.03 7.25 -2.38 -0.02 2.01 16 23 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 24 H -0.01 -0.32 6.64 -2.39 -0.02 -0.34 16 25 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 26 H 0.06 2.43 7.53 -2.39 -0.02 2.41 16 27 H 0.03 1.26 8.01 -2.39 -0.02 1.24 16 28 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.08 2.19 8.06 -2.38 -0.02 2.17 16 30 H 0.35 5.32 9.08 -89.69 -0.81 4.51 16 31 H 0.35 5.59 9.00 -89.69 -0.81 4.79 16 32 H 0.04 1.19 7.63 -2.39 -0.02 1.18 16 33 H 0.08 2.40 7.92 -2.39 -0.02 2.38 16 Total: -1.00 -66.32 262.81 -1.25 -67.58 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -0.53 Total: 10.78 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 2.86 Total: -24.84 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -5.61 Total: -100.39 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.32 -1.25 -67.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784528.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.375 kcal (2) G-P(sol) polarization free energy of solvation -66.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds