Wall clock time and date at job start Mon Mar 30 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.28565 * 2 1 4 4 C 1.54387 * 110.31908 * 122.23109 * 2 1 3 5 5 N 1.48560 * 104.59248 * 142.75435 * 4 2 1 6 6 C 1.46902 * 111.00083 * 200.96073 * 5 4 2 7 7 C 1.50706 * 109.46577 * 285.41497 * 6 5 4 8 8 H 1.07999 * 120.00196 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99394 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99350 * 180.02562 * 9 7 6 11 11 Si 1.86789 * 120.00458 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.47200 * 90.00092 * 11 9 7 13 13 H 1.48505 * 109.47499 * 210.00153 * 11 9 7 14 14 H 1.48500 * 109.47262 * 330.00415 * 11 9 7 15 15 C 1.48562 * 104.21958 * 320.51382 * 5 4 2 16 16 C 1.54258 * 110.32718 * 237.86483 * 2 1 3 17 17 H 1.09002 * 110.32227 * 122.20933 * 16 2 1 18 18 C 1.53002 * 110.32239 * 0.02562 * 16 2 1 19 19 N 1.46898 * 109.46821 * 177.90516 * 18 16 2 20 20 H 1.09006 * 109.46500 * 182.13018 * 1 2 3 21 21 H 1.08994 * 109.47568 * 302.13032 * 1 2 3 22 22 H 1.08997 * 109.46812 * 62.13542 * 1 2 3 23 23 H 1.08995 * 110.41382 * 23.97170 * 4 2 1 24 24 H 1.09005 * 110.40765 * 261.52431 * 4 2 1 25 25 H 1.09000 * 109.46894 * 165.41730 * 6 5 4 26 26 H 1.09000 * 109.47263 * 45.41296 * 6 5 4 27 27 H 0.97005 * 119.99656 * 179.97438 * 10 9 7 28 28 H 1.09001 * 110.41033 * 158.26365 * 15 5 4 29 29 H 1.09006 * 110.41176 * 280.58509 * 15 5 4 30 30 H 1.08996 * 109.47407 * 297.90698 * 18 16 2 31 31 H 1.09000 * 109.47254 * 57.90795 * 18 16 2 32 32 H 1.00902 * 111.00013 * 180.02562 * 19 18 16 33 33 H 1.00903 * 111.00576 * 303.95005 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0661 -0.7722 1.2247 5 7 3.2694 -1.4835 0.7214 6 6 3.6068 -2.6231 1.5847 7 6 4.2263 -2.1190 2.8627 8 1 4.3560 -1.0581 3.0181 9 6 4.6266 -3.0121 3.8338 10 7 5.1668 -2.5721 4.9492 11 14 4.4004 -4.8468 3.5658 12 1 5.6093 -5.4036 2.9069 13 1 4.1974 -5.5171 4.8753 14 1 3.2149 -5.0785 2.7020 15 6 2.8807 -1.9416 -0.6374 16 6 2.0659 -0.7694 -1.2249 17 1 2.7083 -0.1252 -1.8253 18 6 0.9051 -1.2990 -2.0692 19 7 1.4353 -1.9844 -3.2555 20 1 -0.3632 -1.0270 0.0382 21 1 -0.3634 0.5465 0.8702 22 1 -0.3633 0.4803 -0.9085 23 1 1.3229 -1.4862 1.5791 24 1 2.3393 -0.0796 2.0209 25 1 4.3146 -3.2723 1.0692 26 1 2.7014 -3.1840 1.8164 27 1 5.4481 -3.2005 5.6327 28 1 3.7671 -2.1297 -1.2431 29 1 2.2666 -2.8400 -0.5744 30 1 0.3157 -1.9997 -1.4779 31 1 0.2741 -0.4671 -2.3820 32 1 0.6875 -2.3432 -3.8301 33 1 2.0380 -1.3739 -3.7867 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708863455.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:19 Heat of formation + Delta-G solvation = -0.804013 kcal Electronic energy + Delta-G solvation = -13087.743098 eV Core-core repulsion = 10954.932927 eV Total energy + Delta-G solvation = -2132.810171 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.03117 -34.88953 -32.97448 -31.92310 -29.15409 -27.50674 -25.21786 -23.75232 -21.69191 -20.07960 -18.75308 -16.70002 -16.18471 -15.27304 -14.77024 -14.53997 -14.04932 -13.73967 -13.25294 -12.45422 -12.39143 -12.17820 -11.92850 -11.77065 -11.46717 -11.04316 -10.50305 -10.35934 -10.32819 -10.20624 -9.96956 -9.76093 -9.22746 -8.65217 -8.51556 -7.42512 -6.00376 -3.97023 3.32286 3.39121 3.42276 4.46637 4.50498 4.76337 4.95341 5.13593 5.28299 5.34007 5.41033 5.59669 5.66096 5.71988 5.90619 5.94850 6.05554 6.19041 6.35421 6.40845 6.56217 6.64681 6.69916 6.87983 6.99106 7.10450 7.38324 7.62221 7.95295 7.99052 8.71676 9.09371 9.61953 11.13025 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048102 B = 0.009107 C = 0.008274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.958775 B = 3073.771280 C = 3383.365611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.075 0.925 4 C 0.051 3.949 5 N -0.503 5.503 6 C 0.152 3.848 7 C -0.505 4.505 8 H 0.079 0.921 9 C 0.067 3.933 10 N -0.902 5.902 11 Si 0.875 3.125 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.047 3.953 16 C -0.086 4.086 17 H 0.071 0.929 18 C 0.068 3.932 19 N -0.851 5.851 20 H 0.055 0.945 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.036 0.964 24 H 0.079 0.921 25 H 0.023 0.977 26 H -0.010 1.010 27 H 0.263 0.737 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.027 0.973 32 H 0.337 0.663 33 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.819 2.745 -13.366 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.093 0.907 4 C -0.077 4.077 5 N -0.226 5.226 6 C 0.025 3.975 7 C -0.544 4.544 8 H 0.098 0.902 9 C -0.134 4.134 10 N -0.541 5.541 11 Si 0.702 3.298 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.081 4.081 16 C -0.106 4.106 17 H 0.090 0.910 18 C -0.062 4.062 19 N -0.380 5.380 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.097 0.903 25 H 0.041 0.959 26 H 0.008 0.992 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.148 0.852 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.916 2.509 -12.655 15.682 hybrid contribution -1.213 -0.883 -0.479 1.574 sum -10.128 1.626 -13.133 16.664 Atomic orbital electron populations 1.21936 0.95557 1.01624 1.01164 1.21958 0.94776 0.99680 0.95111 0.90660 1.23006 0.91503 0.97233 0.95966 1.65350 1.31177 1.24880 1.01218 1.20318 0.95011 0.88902 0.93250 1.21032 1.38988 0.95936 0.98424 0.90248 1.24909 0.94912 0.98559 0.95060 1.69902 1.42185 1.34629 1.07429 0.86866 0.79114 0.86230 0.77599 1.20124 1.21217 1.19310 1.22976 0.97958 0.95197 0.92019 1.21910 0.95856 0.97117 0.95679 0.91014 1.22043 0.96069 0.96277 0.91826 1.58676 1.24655 1.43213 1.11455 0.92638 0.92703 0.92890 0.94570 0.90255 0.95884 0.99192 0.92739 0.91063 0.94622 0.90975 0.95465 0.85160 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 7.94 37.16 0.29 -1.48 16 2 C -0.10 -1.43 3.65 -89.23 -0.33 -1.76 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.05 1.00 5.66 -2.18 -0.01 0.99 16 5 N -0.50 -11.16 5.33 -231.40 -1.23 -12.39 16 6 C 0.15 3.89 3.66 -4.97 -0.02 3.87 16 7 C -0.51 -14.94 9.53 -34.44 -0.33 -15.27 16 8 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 9 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 10 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 11 Si 0.87 22.16 27.47 -169.99 -4.67 17.49 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 15 C 0.05 0.86 5.81 -2.18 -0.01 0.85 16 16 C -0.09 -1.26 3.25 -89.24 -0.29 -1.55 16 17 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 18 C 0.07 0.82 4.91 -3.82 -0.02 0.80 16 19 N -0.85 -9.23 9.42 -10.37 -0.10 -9.33 16 20 H 0.05 0.69 6.81 -51.93 -0.35 0.34 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.55 6.74 -51.93 -0.35 0.20 16 23 H 0.04 0.72 7.44 -51.93 -0.39 0.34 16 24 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 25 H 0.02 0.59 7.51 -51.93 -0.39 0.20 16 26 H -0.01 -0.25 6.82 -51.93 -0.35 -0.60 16 27 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.04 0.68 7.66 -51.93 -0.40 0.28 16 30 H 0.07 0.93 6.84 -51.93 -0.35 0.58 16 31 H 0.03 0.29 6.67 -51.93 -0.35 -0.06 16 32 H 0.34 2.93 9.08 -39.29 -0.36 2.57 16 33 H 0.34 3.24 8.99 -39.29 -0.35 2.88 16 LS Contribution 258.43 15.07 3.89 3.89 Total: -1.00 -31.61 258.43 -7.49 -39.10 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.35 Total: 0.39 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -0.81 Total: -11.65 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.56 Total: -49.23 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.61 -7.49 -39.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708863455.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.297 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds