Wall clock time and date at job start Mon Mar 30 2020 02:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.28565 * 2 1 4 4 C 1.54387 * 110.31908 * 122.23109 * 2 1 3 5 5 N 1.48560 * 104.59248 * 142.75435 * 4 2 1 6 6 C 1.46902 * 111.00083 * 200.96073 * 5 4 2 7 7 C 1.50706 * 109.46577 * 285.41497 * 6 5 4 8 8 H 1.07999 * 120.00196 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99394 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99350 * 180.02562 * 9 7 6 11 11 Si 1.86789 * 120.00458 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.47200 * 90.00092 * 11 9 7 13 13 H 1.48505 * 109.47499 * 210.00153 * 11 9 7 14 14 H 1.48500 * 109.47262 * 330.00415 * 11 9 7 15 15 C 1.48562 * 104.21958 * 320.51382 * 5 4 2 16 16 C 1.54258 * 110.32718 * 237.86483 * 2 1 3 17 17 H 1.09002 * 110.32227 * 122.20933 * 16 2 1 18 18 C 1.53002 * 110.32239 * 0.02562 * 16 2 1 19 19 N 1.46898 * 109.46821 * 177.90516 * 18 16 2 20 20 H 1.09006 * 109.46500 * 182.13018 * 1 2 3 21 21 H 1.08994 * 109.47568 * 302.13032 * 1 2 3 22 22 H 1.08997 * 109.46812 * 62.13542 * 1 2 3 23 23 H 1.08995 * 110.41382 * 23.97170 * 4 2 1 24 24 H 1.09005 * 110.40765 * 261.52431 * 4 2 1 25 25 H 1.09000 * 109.46894 * 165.41730 * 6 5 4 26 26 H 1.09000 * 109.47263 * 45.41296 * 6 5 4 27 27 H 0.97005 * 119.99656 * 179.97438 * 10 9 7 28 28 H 1.09001 * 110.41033 * 158.26365 * 15 5 4 29 29 H 1.09006 * 110.41176 * 280.58509 * 15 5 4 30 30 H 1.08996 * 109.47407 * 297.90698 * 18 16 2 31 31 H 1.09000 * 109.47254 * 57.90795 * 18 16 2 32 32 H 1.00902 * 111.00013 * 180.02562 * 19 18 16 33 33 H 1.00903 * 111.00576 * 303.95005 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0661 -0.7722 1.2247 5 7 3.2694 -1.4835 0.7214 6 6 3.6068 -2.6231 1.5847 7 6 4.2263 -2.1190 2.8627 8 1 4.3560 -1.0581 3.0181 9 6 4.6266 -3.0121 3.8338 10 7 5.1668 -2.5721 4.9492 11 14 4.4004 -4.8468 3.5658 12 1 5.6093 -5.4036 2.9069 13 1 4.1974 -5.5171 4.8753 14 1 3.2149 -5.0785 2.7020 15 6 2.8807 -1.9416 -0.6374 16 6 2.0659 -0.7694 -1.2249 17 1 2.7083 -0.1252 -1.8253 18 6 0.9051 -1.2990 -2.0692 19 7 1.4353 -1.9844 -3.2555 20 1 -0.3632 -1.0270 0.0382 21 1 -0.3634 0.5465 0.8702 22 1 -0.3633 0.4803 -0.9085 23 1 1.3229 -1.4862 1.5791 24 1 2.3393 -0.0796 2.0209 25 1 4.3146 -3.2723 1.0692 26 1 2.7014 -3.1840 1.8164 27 1 5.4481 -3.2005 5.6327 28 1 3.7671 -2.1297 -1.2431 29 1 2.2666 -2.8400 -0.5744 30 1 0.3157 -1.9997 -1.4779 31 1 0.2741 -0.4671 -2.3820 32 1 0.6875 -2.3432 -3.8301 33 1 2.0380 -1.3739 -3.7867 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708863455.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:18 Heat of formation + Delta-G solvation = -26.199306 kcal Electronic energy + Delta-G solvation = -13088.844321 eV Core-core repulsion = 10954.932927 eV Total energy + Delta-G solvation = -2133.911394 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.42081 -36.30456 -34.71757 -33.54761 -30.66271 -29.18761 -26.67677 -25.03635 -23.35043 -21.83197 -19.98979 -18.88700 -17.39959 -16.69281 -16.14607 -15.77212 -15.70284 -15.32737 -14.74301 -14.51719 -13.72936 -13.42630 -13.35200 -13.10083 -12.92782 -12.78784 -12.27023 -12.06054 -11.81519 -11.65142 -11.51162 -11.45298 -11.15530 -10.80768 -9.46594 -9.18688 -8.31742 -6.35527 1.31803 1.33196 1.44422 2.31651 3.00681 3.31596 3.55255 3.69755 3.96896 4.13394 4.26499 4.50100 4.55283 4.61225 4.64378 4.71926 4.77151 4.84812 4.90627 4.98079 5.05711 5.20207 5.26022 5.36429 5.48491 5.54206 5.95669 6.19053 6.32818 6.58911 6.69598 6.70407 7.28328 8.85216 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048102 B = 0.009107 C = 0.008274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.958775 B = 3073.771280 C = 3383.365611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 H 0.081 0.919 4 C 0.048 3.952 5 N -0.527 5.527 6 C 0.164 3.836 7 C -0.519 4.519 8 H 0.034 0.966 9 C 0.008 3.992 10 N -0.947 5.947 11 Si 0.949 3.051 12 H -0.263 1.263 13 H -0.277 1.277 14 H -0.255 1.255 15 C 0.048 3.952 16 C -0.078 4.078 17 H 0.081 0.919 18 C 0.077 3.923 19 N -0.862 5.862 20 H 0.053 0.947 21 H 0.056 0.944 22 H 0.081 0.919 23 H 0.029 0.971 24 H 0.051 0.949 25 H 0.023 0.977 26 H -0.012 1.012 27 H 0.268 0.732 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.350 0.650 33 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.294 1.943 -15.495 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.099 0.901 4 C -0.080 4.080 5 N -0.250 5.250 6 C 0.036 3.964 7 C -0.557 4.557 8 H 0.052 0.948 9 C -0.189 4.189 10 N -0.587 5.587 11 Si 0.772 3.228 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.179 1.179 15 C -0.080 4.080 16 C -0.097 4.097 17 H 0.100 0.900 18 C -0.054 4.054 19 N -0.394 5.394 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.100 0.900 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.006 0.994 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.403 1.722 -14.813 18.183 hybrid contribution -0.704 -0.532 0.208 0.906 sum -11.107 1.190 -14.605 18.388 Atomic orbital electron populations 1.21898 0.92936 1.02018 1.02786 1.21913 0.96875 0.99107 0.92779 0.90100 1.23024 0.90542 0.96848 0.97601 1.65221 1.33206 1.23951 1.02662 1.20046 0.94385 0.89893 0.92044 1.21232 1.39666 0.94066 1.00729 0.94768 1.25872 0.94273 1.04323 0.94465 1.70051 1.43280 1.36827 1.08571 0.85690 0.79861 0.79090 0.78169 1.18824 1.20185 1.17903 1.23019 0.98450 0.96660 0.89847 1.21882 0.96566 0.95548 0.95731 0.90036 1.21895 0.94820 0.96935 0.91722 1.58611 1.25550 1.43528 1.11669 0.92755 0.92462 0.90020 0.95277 0.93012 0.95870 0.99433 0.92292 0.91267 0.95114 0.91780 0.92938 0.83597 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 7.94 71.98 0.57 -2.42 16 2 C -0.09 -2.47 3.65 -9.90 -0.04 -2.50 16 3 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 4 C 0.05 1.91 5.66 86.45 0.49 2.40 16 5 N -0.53 -23.64 5.33 -886.01 -4.72 -28.36 16 6 C 0.16 8.49 3.66 85.56 0.31 8.80 16 7 C -0.52 -31.77 9.53 25.60 0.24 -31.53 16 8 H 0.03 2.33 8.06 -2.91 -0.02 2.31 16 9 C 0.01 0.49 5.47 84.66 0.46 0.95 16 10 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 11 Si 0.95 45.78 27.47 68.60 1.88 47.67 16 12 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 14 H -0.26 -11.67 6.54 99.48 0.65 -11.02 16 15 C 0.05 1.71 5.81 86.45 0.50 2.22 16 16 C -0.08 -2.08 3.25 -9.90 -0.03 -2.12 16 17 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 18 C 0.08 1.57 4.91 86.30 0.42 1.99 16 19 N -0.86 -15.90 9.42 -186.72 -1.76 -17.66 16 20 H 0.05 1.20 6.81 -2.38 -0.02 1.18 16 21 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.08 1.33 6.74 -2.39 -0.02 1.31 16 23 H 0.03 1.18 7.44 -2.39 -0.02 1.16 16 24 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 25 H 0.02 1.19 7.51 -2.39 -0.02 1.17 16 26 H -0.01 -0.62 6.82 -2.39 -0.02 -0.63 16 27 H 0.27 15.96 8.31 -92.70 -0.77 15.19 16 28 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.03 1.12 7.66 -2.38 -0.02 1.11 16 30 H 0.06 1.45 6.84 -2.39 -0.02 1.43 16 31 H 0.05 0.84 6.67 -2.39 -0.02 0.83 16 32 H 0.35 4.91 9.08 -89.69 -0.81 4.10 16 33 H 0.35 5.49 8.99 -89.69 -0.81 4.68 16 Total: -1.00 -69.88 258.43 -1.94 -71.81 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -0.58 Total: 9.34 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 2.94 Total: -22.21 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -6.18 Total: -106.61 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.67 kcal Total: -69.88 -1.94 -71.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708863455.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.615 kcal (2) G-P(sol) polarization free energy of solvation -69.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds